bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: May 24, 2023
Abstract
In
the
amniote
limb,
FGF10
is
essential
for
limb
bud
initiation
and
outgrowth.
However,
whether
this
function
broadly
conserved
in
tetrapods
and/or
involved
adult
regeneration
remains
unknown.
To
tackle
question,
we
established
an
Fgf10
null
mutant
line
newt
Pleurodeles
waltl
which
have
amazing
regenerative
ability.
While
forelimbs
develop
normally,
hindlimbs
exhibit
severe
digit
reduction,
fail
to
ossify
zeugopod,
downregulate
FGF
target
genes
like
Sall1,
Runx1
Hoxa11/d11
.
Despite
these
developmental
defects,
mutants
were
able
regenerate
near-normal
hindlimbs.
Together,
our
results
suggest
important
role
hindlimb
formation
zeugopod
ossification
during
development,
but
little
or
no
regeneration,
suggesting
that
different
mechanisms
operate
versus
development.
PLoS ONE,
Journal Year:
2024,
Volume and Issue:
19(5), P. e0303260 - e0303260
Published: May 14, 2024
The
nail
matrix
containing
stem
cell
populations
produces
nails
and
may
contribute
to
fingertip
regeneration.
Nails
are
important
tissues
that
maintain
the
functions
of
hand
foot
for
handling
objects
locomotion.
Tumor
chemotherapy
impairs
growth
and,
in
many
cases,
loses
them,
although
not
permanently.
In
this
report,
we
have
achieved
successful
differentiation
(NS)-like
cells
from
human-induced
pluripotent
(iPSCs)
via
digit
organoids
by
stepwise
stimulation,
tracing
molecular
processes
involved
limb
development.
Comprehensive
mRNA
sequencing
analysis
revealed
organoid
global
gene
expression
profile
fits
human
finger
NS-like
expressed
Lgr6
protein
produced
type-I
keratin,
KRT17,
type-II
KRT81,
which
abundant
nails.
Furthermore,
succeeded
producing
functional
Lgr6-reporter
iPSCs.
reporter
iPSC-derived
Lgr6-positive
also
KRT17
KRT81
proteins
percutaneously
transplanted
region.
To
best
our
knowledge,
is
first
report
Our
method
construct
enable
discovery
drugs
repair
possibly
fingertip-regenerative
therapy.
Developmental Biology,
Journal Year:
2024,
Volume and Issue:
515, P. 151 - 159
Published: July 26, 2024
Many
salamanders
can
completely
regenerate
a
fully
functional
limb.
Limb
regeneration
is
carefully
coordinated
process
involving
several
defined
stages.
One
key
event
during
the
patterning
of
blastema
to
inform
cells
what
they
must
differentiate
into.
Although
it
known
that
many
genes
involved
in
initial
development
limb
are
re-used
regeneration,
exact
molecular
circuitry
this
not
understood.
Several
large-scale
transcriptional
profiling
studies
axolotl
have
identified
transcription
factors
up-regulated
after
amputation.
Sall4
factor
has
been
play
essential
roles
maintaining
an
undifferentiated
state
and
also
plays
unique
role
development.
Inactivation
bud
results
defects
anterior-posterior
found
be
both
Xenopus
salamanders,
but
date
function
untested.
We
confirmed
using
qRT-PCR
present
skin
within
blastema.
Using
CRISPR
technology
we
microinjected
gRNAs
specific
for
complexed
with
cas9
protein
into
specifically
knockout
only.
This
resulted
defects,
including
missing
digits,
fusion
digit
elements,
radius
ulna.
suggests
may
similar
regulating
specification
anterior-proximal
skeletal
elements.
Computational and Structural Biotechnology Journal,
Journal Year:
2024,
Volume and Issue:
23, P. 3186 - 3198
Published: Aug. 23, 2024
Highlights•Long-read
sequencing
was
used
to
overcome
annotation
limitations,
improving
coverage
and
accuracy
of
axolotl
genome.•The
study
identified
4997
novel
transcribed
regions
583
sequences
that
encoded
functional
proteins.•Potential
proteins
were
discovered
with
key
regenerative
functions.•Alternative
splicing
variants
detected
across
critical
regeneration
pathways.AbstractAxolotls
are
known
for
their
remarkable
ability.
Exploring
transcriptome
provides
insight
into
mechanisms.
However,
the
current
is
limited,
leaving
role
unannotated
transcripts
in
unknown.
To
discourse
this
challenge,
we
exploited
long-read
technology,
which
enables
direct
observation
full-length
RNA
transcripts,
greatly
enhancing
annotation.
By
utilizing
method,
222
gene
loci
4775
quantified
using
short-read
data.
Through
inclusive
analysis,
homologs,
potential
proteins,
noncoding
RNAs,
alternative
events
pathways.
In
particular,
high
protein-coding
implicated
cell
cycle
regulation
musculoskeletal
development,
identified.
Interestingly,
splice
also
diverse
pathways
regeneration.
This
specifies
these
potentially
play
vital
roles
underpinning
robust
capacities
axolotls.
Single-cell
transcriptomic
analysis
further
revealed
isoforms
predominantly
exist
limb
chondrocytes
mature
tissue
populations.
Overall,
findings
significantly
advanced
consideration
provided
a
new
perspective
understanding
mechanisms
abilities
axolotls.Graphical
abstract
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Sept. 2, 2022
SUMMARY
Axolotl
limb
regeneration
is
accompanied
by
the
transient
induction
of
cellular
senescence
within
blastema,
structure
which
nucleates
regeneration.
The
precise
role
this
blastemal
senescent
cell
(bSC)
population,
however,
remains
unknown.
Here,
through
a
combination
gain-
and
loss-of-function
assays,
we
elucidate
functions
molecular
features
in
vivo
.
We
demonstrate
that
plays
positive
during
axolotl
regeneration,
creating
pro-proliferative
niche
supports
progenitor
expansion
blastema
outgrowth.
Senescent
cells
impact
on
their
microenvironment
via
Wnt
pathway
modulation.
Further,
uncover
link
between
signalling
induction,
propose
bSC-derived
signals
facilitate
proliferation
neighbouring
part
preventing
into
senescence.
This
work
defines
roles
complex
structures.
Journal of the mechanical behavior of biomedical materials/Journal of mechanical behavior of biomedical materials,
Journal Year:
2023,
Volume and Issue:
150, P. 106341 - 106341
Developmental Dynamics,
Journal Year:
2022,
Volume and Issue:
251(11), P. 1880 - 1896
Published: July 9, 2022
Abstract
Background
Limb
buds
develop
as
bilateral
outgrowths
of
the
lateral
plate
mesoderm
and
are
patterned
along
three
axes.
Current
models
proximal
to
distal
patterning
early
amniote
limb
suggest
that
two
signals,
a
organizing
signal
from
apical
epithelial
ridge
(AER,
Fgfs)
an
opposing
(retinoic
acid
[RA])
act
on
pattern
this
axis.
Results
Transcriptional
analysis
stage
51
Xenopus
laevis
hindlimb
sectioned
proximal‐distal
axis
showed
region
is
distinct
rest
limb.
Expression
capn8.3
,
novel
calpain,
was
located
in
cells
immediately
flanking
AER.
The
Wnt
antagonist
Dkk1
AER‐specific
limbs.
Two
transcription
factors,
sall1
zic5
were
expressed
mesenchyme.
Zic5
has
no
described
association
with
development.
We
also
describe
expression
genes,
gata5
tnn
not
previously
associated
Differentially
genes
Fgf,
Wnt,
RA
signaling
well
differential
cell
adhesion
proliferation.
Conclusions
identify
new
candidate
for
proximodistal
patterning.
Our
RA‐regulated
supports
role
transient
gradients
bud
proximal‐to‐distal
anamniote
model
organism.
Genome Biology and Evolution,
Journal Year:
2024,
Volume and Issue:
16(5)
Published: April 23, 2024
Abstract
Metazoan
species
depict
a
wide
spectrum
of
regeneration
ability
which
calls
into
question
the
evolutionary
origins
underlying
processes.
Since
with
high
are
widely
distributed
throughout
metazoans,
there
is
possibility
that
metazoan
ancestor
had
an
common
molecular
mechanism.
Early
metazoans
like
sponges
possess
regenerative
ability,
but,
due
to
large
differences
they
have
Cnidaria
and
Bilateria
regarding
symmetry
neuronal
systems,
it
can
be
inferred
this
different.
We
hypothesized
last
possessed
remarkable
was
lost
during
evolution.
separated
three
classes
possessing
whole-body
regenerating,
low
ability.
Using
multiway
BLAST
gene
phylogeny
approach,
we
identified
genes
conserved
in
regenerating
labeled
them
Bilaterian
genes.
Through
transcription
factor
analysis,
were
associated
overabundance
homeodomain
regulatory
elements.
RNA
interference
resulted
loss
phenotype
for
HRJDa,
HRJDb,
DUF21,
DISP3,
ARMR
observed
DUF21
knockdown
highly
lethal
early
stages
indicating
potential
role
wound
response.
Also,
showed
after
second
amputation.
The
results
strongly
correlate
their
respective
RNA-seq
profiles.
propose
play
major
across
Bilateria.
Cellular Reprogramming,
Journal Year:
2024,
Volume and Issue:
26(3), P. 91 - 92
Published: May 8, 2024
Cellular
senescence
is
a
state
in
which
cells
enter
cell
cycle
arrest.
However,
senescent
have
the
ability
to
secrete
signaling
molecules
such
as
chemokines,
cytokines,
and
growth
factors.
This
secretory
activity
an
important
feature
of
cells,
since
secreted
factors
impact
surrounding
cellular
microenvironment.
Indeed,
their
secretome
play
crucial
role
during
limb
development.
whether
process
regeneration
also
relies
on
remains
unclear.
Creation
novel
targeted
depletion
strategy
that
can
eliminate
regenerating
has
now
demonstrated
for
regeneration.
linked
cell-derived
Wnt
signaling.
These
findings
reveal
previously
unknown
through
The
mechanobiology
of
cartilage
during
limb
growth
represents
a
complex
interplay
between
mechanical
forces
and
biological
processes.
However,
the
fundamental
processes
that
involve
formation
from
mesenchymal
stem
cells
are
not
fully
understood.
Further,
cellular
level
response
in
its
native
environment
under
physiological
load
is
characterized.
This
thesis
aims
to
bridge
critical
gaps
our
understanding
development
regeneration
by
investigating
nuanced
interactions
mechanics
within
cartilaginous
tissues.
Identifying
these
research
gaps,
this
encompasses
three
specific
aims.
Aim
1
focuses
on
characterizing
viscoelastic
material
properties
growing
limbs,
employing
axolotls
as
an
animal
model.
Our
results
reveal
significant
increases
both
instantaneous
equilibrium
shear
moduli
regeneration,
coupled
with
notable
changes
short-
long-term
stress
relaxation
times.
glycosaminoglycan
content
also
development.
2
explores
calcium
signaling
in-situ
chondrocytes
physiologically
relevant
cyclic
loads
dynamic
hydrostatic
pressure.
findings
underscore
strain
rate-dependent
increase
percentage
responsive
compressive
loads,
non-distinct
time
characteristics
across
loading
conditions.
Conversely,
low
magnitude
pressure
showed
no
impact
chondrocytes.
3
investigates
expression
mechanosensitive
ion
channels
(TRPV4,
PIEZO1,
PIEZO2)
axolotl
regeneration.
study
unveils
presence
TRPV4
PIEZO2
blastemal
early
late
heightened
condensing
mesenchyme
These
taken
together
shed
light
intricate
responses.
implications
abnormal
mechanobiological
profound,
contributing
developmental
disorders
musculoskeletal
diseases.
Understanding
mechanisms
conditions
opens
avenues
for
therapeutic
strategies
aimed
at
promoting
proper
mitigating
skeletal
abnormalities.
Future
will
focus
elucidating
functional
roles
further
expanding
interconnections
biology.--Author's
abstract
Annals of the New York Academy of Sciences,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Sept. 13, 2024
Abstract
Previous
studies
have
implicated
epithelial–mesenchymal
transition
(EMT)
in
salamander
limb
regeneration.
In
this
review,
we
describe
putative
roles
for
EMT
during
each
stage
of
regeneration
axolotls
and
other
salamanders.
We
hypothesize
that
EMT‐like
gene
expression
programs
may
regulate
three
main
cellular
processes
regeneration:
(1)
keratinocyte
migration
wound
closure;
(2)
transient
invasion
the
stump
by
epithelial
cells
undergoing
EMT;
(3)
use
non‐epithelial
blastemal
progenitor
to
escape
confines
their
niches.
Finally,
propose
nontraditional
warrant
further
investigation,
including
alternative
regulators,
stem
cell
activation,
fibrosis
induced
aberrant
EMT.