bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Nov. 27, 2022
Abstract
The
study
of
functional
diversity
(FD)
provides
ways
to
understand
phenomena
as
complex
community
assembly
or
the
dynamics
biodiversity
change
under
multiple
pressures.
Different
frameworks
are
used
quantify
FD,
either
based
on
dissimilarity
matrices
(e.g.,
Rao
entropy,
dendrograms)
multidimensional
spaces
(e.g.
convex
hulls,
kernel-density
hypervolumes).
While
first
does
not
enable
measurement
FD
within
a
richness/divergence/regularity
framework,
results
in
distortion
space,
latter
allow
for
comparisons
with
phylogenetic
(PD)
measures
and
can
be
extremely
sensitive
outliers.
We
propose
use
neighbor-joining
trees
(NJ)
represent
way
that
combines
strengths
current
without
many
their
weaknesses.
Our
proposal
is
also
uniquely
suited
studies
compare
PD,
both
share
(NJ
others)
same
mathematical
principles.
test
ability
this
novel
framework
initial
distances
between
species
minimal
space
sensitivity
using
NJ
compared
conventional
dendrograms,
hypervolumes
simulated
empirical
datasets.
Using
we
demonstrate
it
possible
combine
much
flexibility
provided
by
simplicity
tree-based
representations.
Moreover,
method
directly
comparable
PD
measures,
enables
quantification
richness,
divergence
regularity
space.
Trends in Ecology & Evolution,
Journal Year:
2022,
Volume and Issue:
37(10), P. 872 - 885
Published: July 8, 2022
Insects
are
the
most
diverse
group
of
animals
on
Earth,
but
their
small
size
and
high
diversity
have
always
made
them
challenging
to
study.
Recent
technological
advances
potential
revolutionise
insect
ecology
monitoring.
We
describe
state
art
four
technologies
(computer
vision,
acoustic
monitoring,
radar,
molecular
methods),
assess
advantages,
current
limitations,
future
potential.
discuss
how
these
can
adhere
modern
standards
data
curation
transparency,
implications
for
citizen
science,
integration
among
different
monitoring
programmes
technologies.
argue
that
they
provide
unprecedented
possibilities
it
will
be
important
foster
international
via
collaboration.
Ecography,
Journal Year:
2022,
Volume and Issue:
2022(11)
Published: Aug. 30, 2022
The
widespread
use
of
species
traits
in
basic
and
applied
ecology,
conservation
biogeography
has
led
to
an
exponential
increase
functional
diversity
analyses,
with
>
10
000
papers
published
2010–2020,
1800
only
2021.
This
interest
is
reflected
the
development
a
multitude
theoretical
methodological
frameworks
for
calculating
diversity,
making
it
challenging
navigate
myriads
options
report
detailed
accounts
trait‐based
analyses.
Therefore,
discipline
ecology
would
benefit
from
existence
general
guideline
standard
reporting
good
practices
We
devise
eight‐step
protocol
guide
researchers
conducting
overarching
goal
increasing
reproducibility,
transparency
comparability
across
studies.
based
on:
1)
identification
research
question;
2)
sampling
scheme
study
design;
3–4)
assemblage
data
matrices;
5)
exploration
preprocessing;
6)
computation;
7)
model
fitting,
evaluation
interpretation;
8)
data,
metadata
code
provision.
Throughout
protocol,
we
provide
information
on
how
best
select
questions,
designs,
trait
compute
interpret
results
discuss
ways
ensure
reproducibility
results.
To
facilitate
implementation
this
template,
further
develop
interactive
web‐based
application
(
stepFD
)
form
checklist
workflow,
detailing
all
steps
allowing
user
produce
final
‘reproducibility
report'
upload
alongside
paper.
A
thorough
transparent
analyses
ensures
that
ecologists
can
incorporate
others'
findings
into
meta‐analyses,
shared
be
integrated
larger
databases
consensus
available
reused
by
other
researchers.
All
these
elements
are
key
pushing
forward
vibrant
fast‐growing
field
research.
Ecography,
Journal Year:
2024,
Volume and Issue:
2024(7)
Published: April 30, 2024
The
study
of
functional
diversity
(FD)
provides
ways
to
understand
phenomena
as
complex
community
assembly
or
the
dynamics
biodiversity
change
under
multiple
pressures.
Different
frameworks
are
used
quantify
FD,
either
based
on
dissimilarity
matrices
(e.g.
Rao
entropy,
dendrograms)
multidimensional
spaces
convex
hulls,
kernel‐density
hypervolumes),
each
with
their
own
strengths
and
limits.
Frameworks
do
not
enable
measurement
all
components
FD
(i.e.
richness,
divergence,
regularity),
result
in
distortion
space.
allow
for
comparisons
phylogenetic
(PD)
measures
can
be
sensitive
outliers.
We
propose
use
neighbor‐joining
trees
(NJ)
represent
a
way
that
combines
current
without
many
weaknesses.
Importantly,
our
approach
is
uniquely
suited
studies
compare
PD,
both
share
(NJ
others)
same
mathematical
principles.
test
ability
this
novel
framework
initial
distances
between
species
minimal
space
sensitivity
results
using
NJ
compared
conventional
dendrograms,
hypervolumes
simulated
empirical
datasets.
Using
NJ,
we
demonstrate
it
possible
combine
much
flexibility
provided
by
simplicity
tree‐based
representations.
Moreover,
method
directly
comparable
taxonomic
(TD)
PD
measures,
enables
quantification
divergence
regularity
Ecosphere,
Journal Year:
2025,
Volume and Issue:
16(3)
Published: March 1, 2025
Abstract
Evaluating
progress
toward
achieving
freshwater
conservation
and
sustainability
goals
requires
transforming
diverse
types
of
data
into
useful
information
for
scientists,
managers,
other
interest
groups.
Despite
substantial
increases
in
the
volume
collected
worldwide,
many
regions
ecosystems
still
lack
sufficient
collection
and/or
access.
We
illustrate
how
these
challenges
result
from
a
set
underlying
mechanisms
propose
solutions
that
can
be
applied
by
individuals
or
organizations.
discuss
creative
approaches
to
address
scarcity,
including
use
community
science,
remote‐sensing,
environmental
sensors,
legacy
datasets.
highlight
importance
coordinated
efforts
among
groups
training
programs
improve
At
institutional
level,
we
emphasize
power
prioritizing
curation,
incentivizing
publication,
promoting
research
enhances
coverage
representativeness.
Some
strategies
involve
technological
analytical
approaches,
but
necessitate
shifting
priorities
incentives
organizations
such
as
academic
government
institutions,
monitoring
groups,
journals,
funding
agencies.
Our
overarching
goal
is
stimulate
discussion
narrow
disparities
hindering
understanding
processes
their
change
across
spatial
scales.
Transactions of the Institute of British Geographers,
Journal Year:
2022,
Volume and Issue:
48(1), P. 195 - 212
Published: Aug. 15, 2022
Abstract
Humans,
non‐human
animals,
and
technologies
are
increasingly
entangled.
Using
the
peregrine
falcon
(
Falco
peregrinus
)
as
an
illustrative
example,
we
propose
‘technonatural
history’
a
theoretical
methodological
approach
for
observing,
describing,
examining
role
play
in
shaping
human
relations
with
other
species.
After
nearing
extinction
20th
century,
peregrines
have
become
woven
into
fabric
of
everyday
urban
life
frequently
sighted
raptor
UK,
nesting
on
high‐rise
buildings
church
spires
since
late
1990s.
Their
unexpected
presence
cities
symbolises
hope
multispecies
conviviality
amid
contemporary
ecological
crisis.
As
their
populations
resurged,
crucially,
webcam
livestreaming
developed
rapidly.
Peregrines
were
one
first
animals
to
be
broadcast
over
internet
via
‘nestcams’,
granting
broad
publics
access
intimate
lives.
We
examine
related
technological
histories
natural
falcons
tracing
emergence
‘the
digital
peregrine’
its
manifold
implications
more‐than‐human
geographies.
To
do
so,
build
oral
history
interviews
people
associated
throughout
UK:
nestcam
technicians,
conservationists,
professional
ecologists,
activists,
citizen
scientists.
While
digitisation
brings
closer
these
cosmopolitan
raptors,
they
can
only
ever
grasp
at
wildness
wider
milieus
is
distinct
entity,
encountered
own
set
affects
affordances.
In
peregrine's
case,
create
radical
opportunities
conviviality,
signalling
positive
potentials
host
forging
meaningful
connections.
Current Biology,
Journal Year:
2023,
Volume and Issue:
33(2), P. R59 - R60
Published: Jan. 1, 2023
Amidst
a
global
biodiversity
crisis1,
the
word
'biodiversity'
has
become
indispensable
for
conservation
and
management2.
Yet,
is
often
used
as
buzzword
in
scientific
literature.
Resonant
titles
of
papers
claiming
to
have
studied
'global
biodiversity'
may
be
promote
research
focused
on
few
taxonomic
groups,
habitats,
or
facets
-
taxonomic,
(phylo)genetic,
functional.
This
usage
lead
extrapolating
results
outside
target
systems
these
studies
with
direct
consequences
our
understanding
life
Earth
its
practical
conservation.
Here,
we
random
sample
their
title
take
long
view
use
this
term.
Despite
improvements
analytical
tools,
monitoring
technologies,
data
availability3,4,
found
that
scope
articles
not
increased
recent
years.
We
also
show
wider
attract
more
citations
online
attention.
Our
broad
ramifications
how
from
narrow
affects
Ecology and Evolution,
Journal Year:
2023,
Volume and Issue:
13(10)
Published: Oct. 1, 2023
There
is
a
contemporary
trend
in
many
major
research
institutions
to
de-emphasize
the
importance
of
natural
history
education
favor
theoretical,
laboratory,
or
simulation-based
programs.
This
may
take
form
removing
biodiversity
and
field
courses
from
curriculum
sometimes
subtle
maligning
as
"lesser"
branch
science.
Additional
threats
include
massive
funding
cuts
museums
maintenance
their
collections,
extirpation
taxonomists
across
disciplines,
critical
under-appreciation
role
that
data
(and
other
forms
observational
data,
including
Indigenous
knowledge)
play
scientific
process.
In
this
paper,
we
demonstrate
knowledge
integral
any
competitive
science
program
through
comprehensive
review
ways
which
they
continue
shape
modern
theory
public
perception
We
do
so
by
reviewing
how
has
guided
disciplines
ecology,
evolution,
conservation
are
crucial
for
effective
programs
policy.
underscore
these
insights
with
case
studies,
including:
understanding
dynamics
evolutionary
radiation
relies
on
data;
methods
extracting
novel
museum
specimens;
provided
multi-decade
programs;
most
logical
venue
creating
an
informed
scientifically
literate
society.
conclude
recommendations
aimed
at
students,
university
faculty,
administrators
integrating
supporting
mandates.
Fundamentally,
all
interested
world,
but
can
often
fall
into
habit
abstracting
our
away
its
contexts
complexities.
Doing
risks
losing
sight
entire
vistas
new
questions
over-emphasis
simulated
overly
controlled
studies.
Philosophical Transactions of the Royal Society B Biological Sciences,
Journal Year:
2024,
Volume and Issue:
379(1904)
Published: May 5, 2024
Arthropods
contribute
importantly
to
ecosystem
functioning
but
remain
understudied.
This
undermines
the
validity
of
conservation
decisions.
Modern
methods
are
now
making
arthropods
easier
study,
since
can
be
mass-trapped,
mass-identified,
and
semi-mass-quantified
into
‘many-row
(observation),
many-column
(species)‘
datasets,
with
homogeneous
error,
high
resolution,
copious
environmental-covariate
information.
These
‘novel
community
datasets’
let
us
efficiently
generate
information
on
arthropod
species
distributions,
values,
uncertainty,
magnitude
direction
human
impacts.
We
use
a
DNA-based
method
(barcode
mapping)
produce
an
arthropod-community
dataset
from
121
Malaise-trap
samples,
combine
it
29
remote-imagery
layers
using
deep
neural
net
in
joint
distribution
model.
With
this
approach,
we
maps
for
76
across
225
km
2
temperate-zone
forested
landscape.
visualize
fine-scale
spatial
distributions
richness,
composition,
site
irreplaceability.
Old-growth
forests
show
distinct
composition
higher
stream
courses
have
highest
site-irreplaceability
values.
‘sideways
biodiversity
modelling’
method,
demonstrate
feasibility
mapping
at
sufficient
resolution
inform
local
management
choices,
while
also
being
efficient
enough
scale
up
thousands
square
kilometres.
article
is
part
theme
issue
‘Towards
toolkit
global
insect
monitoring’.
Ecosphere,
Journal Year:
2023,
Volume and Issue:
14(2)
Published: Feb. 1, 2023
Abstract
Managing
forests
for
biodiversity
conservation
while
maintaining
economic
output
is
a
major
challenge
globally
and
requires
accurate
timely
monitoring
of
imperiled
species.
In
the
Pacific
Northwest,
USA,
forest
management
heavily
influenced
by
status
northern
spotted
owls
(
Strix
occidentalis
caurina
),
which
have
been
in
continued
population
decline
past
four
decades.
The
program
transitioning
from
mark–resight
surveys
to
passive
acoustic
framework,
requiring
development
alternative
analysis
approaches.
To
maintain
relevance
management,
these
analyses
must
accurately
track
underlying
changes,
identify
responses
disturbance,
estimate
occupancy
owl
pairs.
We
randomly
selected
surveyed
5‐km
2
hexagons
6
weeks
using
Olympic
Peninsula
Washington
Oregon
Coast
Range
during
2018
breeding
season.
used
convolutional
neural
network
calls,
followed
logistic
regression
determine
sex
vocalizing
assign
pair
status.
implemented
multistate
models
probabilities
detection,
species‐level
landscape
use,
owls.
also
quantified
detections
barred
varia
congeneric
competitor
important
driver
declines.
overall
rate
hexagon
use
was
estimated
at
0.21
(SD
0.04)
after
adjusting
imperfect
0.07
0.02).
probability
detecting
(i.e.,
both
female
male)
weekly
occasion
relatively
low
(0.03,
SD
0.01),
indicating
that
true
between
1.3
4.1
times
greater
than
proportion
with
observed
detections.
Barred
were
ubiquitous,
naïve
0.97.
intensity
calling
had
weak,
negative
effect
on
being
paired
when
present
but
little
measurable
their
detectability.
This
work
establishes
framework
may
be
effective
illustrates
pairs
very
detection
probability,
which—combined
increasingly
numbers
pairs—is
an
consideration
management.