Application of Genomics in Supporting Efficient Conservation and Utilization of Plant Genetic Resources DOI
Peterson Wambugu, Marie-Noëlle Ndjiondjop, Parimalan Rangan

et al.

Sustainable development and biodiversity, Journal Year: 2024, Volume and Issue: unknown, P. 339 - 361

Published: Jan. 1, 2024

Language: Английский

DNA barcoding in herbal medicine: Retrospective and prospective DOI Creative Commons
Shilin Chen, Xianmei Yin, Jianping Han

et al.

Journal of Pharmaceutical Analysis, Journal Year: 2023, Volume and Issue: 13(5), P. 431 - 441

Published: April 5, 2023

DNA barcoding has been widely used for herb identification in recent decades, enabling safety and innovation the field of herbal medicine. In this article, we summarize progress medicine to provide ideas further development application technology. Most importantly, standard barcode extended two ways. First, while conventional barcodes have promoted their versatility fresh or well-preserved samples, super-barcodes based on plastid genomes rapidly developed shown advantages species at low taxonomic levels. Second, mini-barcodes are attractive because they perform better cases degraded from materials. addition, some molecular techniques, such as high-throughput sequencing isothermal amplification, combined with identification, which expanded applications brought about post-DNA-barcoding era. Furthermore, high-species coverage reference libraries constructed sequences increases accuracy credibility discrimination barcodes. summary, should play a key role quality control traditional international trade.

Language: Английский

Citations

48

Comparative Chloroplast Genomics at Low Taxonomic Levels: A Case Study Using Amphilophium (Bignonieae, Bignoniaceae) DOI Creative Commons
Verônica A. Thode, Lúcia G. Lohmann

Frontiers in Plant Science, Journal Year: 2019, Volume and Issue: 10

Published: June 19, 2019

Chloroplast (cp) genome organization, gene order, and content have long been considered conserved among land plants. Despite that, the generation of thousands complete plastomes through next-generation sequencing (NGS) has challenged their nature. In this study, we analyze 11 new Amphilophium (Bignonieae, Bignoniaceae), a diverse genus Neotropical lianas, that Anemopaegma prostratum. We explored structure assembled performed comparative analyses within other available for Bignoniaceae. The overall orientation is similar in all species studied. Plastomes are not Amphilophium, showing significant differences length (155,262-164,786 bp), number genes duplicated IRs (eight, 18, or 19), location SC/IR boundaries (i.e., LSC/IRa junction between rps19 rpl2 genes, petD, petB). Length reflect expansions contractions LSC regions. plastome A. prostratum 168,172 bp, includes 19 boundary located petB gene. show high nucleotide diversity, with many hypervariable regions, 16 signatures positive selection. Multiple SSRs repeat regions were identified detected terms LSC/IR IR/SSC boundaries, sizes mostly shared taxa belong to same clade. Our results bring insights into evolution at low taxonomic levels.

Language: Английский

Citations

73

Identification and phylogenetic analysis of five Crataegus species (Rosaceae) based on complete chloroplast genomes DOI
Liwei Wu, Yingxian Cui, Qing Wang

et al.

Planta, Journal Year: 2021, Volume and Issue: 254(1)

Published: June 28, 2021

Language: Английский

Citations

45

What We Know and What We Do Not Know about Dragon Trees? DOI Open Access
Petr Maděra, Alan Forrest, Pavel Hanáčêk

et al.

Forests, Journal Year: 2020, Volume and Issue: 11(2), P. 236 - 236

Published: Feb. 21, 2020

This article is a broad review focused on dragon trees—one of the most famous groups trees in world, well known from ancient times. These tertiary relicts are severely endangered area where they grow. The characteristic features tree group described and species belonging to this listed. gathers together current knowledge regarding taxonomy, evolution, anatomy morphology, physiology, ontogeny arborescent species. Attention also paid composition, harvesting, medicinal, ethnobotanical use resin (dragons’ blood). An evaluation population structure, distribution, ecology, threats, nature conservation forms final part review. In conclusions we recommend further avenues research that will be needed effectively protect all

Language: Английский

Citations

44

Comparative and phylogenetic analysis of the chloroplast genomes of four commonly used medicinal cultivars of Chrysanthemums morifolium DOI Creative Commons
Yingying Duan, Yuqing Wang,

Wanyue Ding

et al.

BMC Plant Biology, Journal Year: 2024, Volume and Issue: 24(1)

Published: Oct. 22, 2024

Language: Английский

Citations

5

Dragon’s Blood from Dracaena Worldwide: Species, Traditional Uses, Phytochemistry and Pharmacology DOI
Yang Liu, Xiangsheng Zhao, Ruyu Yao

et al.

The American Journal of Chinese Medicine, Journal Year: 2021, Volume and Issue: 49(06), P. 1315 - 1367

Published: Jan. 1, 2021

Dragon’s blood (DB) refers mainly to the crimson resin of many Dracaena spp. DB has been used by different traditional medicine systems worldwide, including Arabic medicine, African Chinese Thai etc. are heal wounds, kill pain, stop bleeding, and cure various diseases such as diarrhea, dysentery ulcers for over 1000 years. 11 3 subspecies reported be able produce red resin. However, resources extremely deficient. Several in threatened status. Over 300 compounds have isolated from spp., flavonoids, steroids, phenolics. exhibits anti-inflammatory, analgesic, antithrombotic, anti-oxidant, antimicrobial, antidiabetic, anticancer properties, which explain its wound healing effects, preventive effects on cardiovascular cerebrovascular diseases, dual-directional regulation flow, neuroprotection radioprotective effects. No apparent side or toxicity reported. restricted being exploited due limited unclear formation mechanism. It is necessary expand cultivation fully understand mechanism underlying process develop an effective induction method sustainable utilization DB.

Language: Английский

Citations

29

Applying DNA barcoding to identify the cultivated provenance of Fritillaria taipaiensis P. Y. Li and its related species DOI

Yuze Liang,

Jie Zhang, Xue Wang

et al.

Journal of Applied Research on Medicinal and Aromatic Plants, Journal Year: 2024, Volume and Issue: 39, P. 100530 - 100530

Published: Jan. 21, 2024

Language: Английский

Citations

4

The complete chloroplast genome of Solanum melongena ‘Yunqie 9’ DOI Creative Commons
Mao Sun, Yanan Yu,

Yulei Yang

et al.

Mitochondrial DNA Part B, Journal Year: 2025, Volume and Issue: 10(2), P. 103 - 107

Published: Jan. 12, 2025

Solanum melongena 'Yunqie 9' was selected by the Horticultural Research Institute of Yunnan Academy Agricultural Sciences based on local environment Province. It is excellent in fruit quality and yield, but it relatively weak disease resistance. No information complete chloroplast genome position phylogeny to restrict its genetic improvement. In this study, sequenced using Illumina high-throughput sequencing technology. The size 155,579 bp length with an GC content 37.70%, composed a large single-copy region (86,189 bp), small (18,504 pair inverted repeat regions (25,443 bp). A total 134 coding genes were annotated entire genome, including 89 protein-coding genes, 37 transfer RNA 8 ribosomal genes. Phylogenetic analysis sequences 20 species Solanaceae family indicated that except for cultivated Solanum, closely related melongena×Solanum torvum insanum.

Language: Английский

Citations

0

The Complete Chloroplast Genome and the Phylogenetic Analysis of Fimbristylis littoralis (Cyperaceae) Collected in Cherry Blossom Nursery DOI Open Access
Zhaoliang Gao, Yutong Cai,

Jiaqi Long

et al.

International Journal of Molecular Sciences, Journal Year: 2025, Volume and Issue: 26(5), P. 2321 - 2321

Published: March 5, 2025

Fimbristylis littoralis, also known as globe fringerush, is one of the most troublesome annual Cyperaceae weeds in dryland fields and nurseries Yangtze Plain, Middle Lower China. The chloroplast (cp) genome F. even this genus, has not been studied yet. In study, feature cp littoralis its phylogenetic relationships reported for first time. It exhibited a typical circular tetramerous structure, with 86 protein-encoding genes. There were 149 simple sequence repeats (SSRs) 1932 long (LRs) detected. IR expansion contraction revealed uniqueness because there special cross-boundary gene, rps3, located at LSC/IRb junction. Phylogenetic divergence time dating analysis showed close relationship between genus Cyperus, well many evolutionary directions family plants. recommended chemical method removing weed from to spray 13 g ai ha-1 (the amount active ingredient applied per hectare) saflufenacil before emergence or 7.5 halosulfuron-methyl after emergence. conclusion, study was report complete plant Fimbristylis. Our findings provided valuable biological information studying evolution among Cyperaceae.

Language: Английский

Citations

0

Comparative analysis of the complete chloroplast genomes of critically endangered legumes (Dalbergia, Papilionoideae): insights into genome structure, phylogeny, and conservation implications DOI
Shabir A. Rather, Kaikai Wang, Hongmei Liu

et al.

Plant Systematics and Evolution, Journal Year: 2025, Volume and Issue: 311(2)

Published: March 27, 2025

Language: Английский

Citations

0