Forests,
Journal Year:
2024,
Volume and Issue:
15(2), P. 269 - 269
Published: Jan. 30, 2024
Quercus
alba
L.,
also
known
as
white
oak,
eastern
or
American
is
a
quintessential
North
species
within
the
oak
section
(Quercus)
of
genus
Quercus,
subgenus
Quercus.
This
plays
vital
role
keystone
in
forests
and
significant
local
regional
economies.
As
long-lived
woody
perennial
covering
an
extensive
natural
range,
Q.
alba’s
biology
shaped
by
myriad
adaptations
accumulated
throughout
its
history.
Populations
are
crucial
repositories
genetic,
genomic,
evolutionary
insights,
capturing
essence
successful
historical
ongoing
responses
to
contemporary
environmental
challenges
Anthropocene.
intersection
offers
exceptional
opportunity
integrate
genomic
knowledge
with
discovery
climate-relevant
traits,
advancing
tree
improvement,
forest
ecology,
management
strategies.
review
provides
comprehensive
examination
current
understanding
biology,
considering
past,
present,
future
research
perspectives.
It
encompasses
aspects
such
distribution,
phylogeny,
population
structure,
key
adaptive
traits
cyclical
conditions
(including
water
use,
reproduction,
propagation,
growth),
well
species’
resilience
biotic
abiotic
stressors.
Additionally,
this
highlights
state-of-the-art
resources
available
for
genus,
including
alba,
showcasing
developments
genetics,
genomics,
biotechnology,
phenomics
tools.
overview
lays
groundwork
exploring
elucidating
principles
longevity
plants,
positioning
emerging
model
species,
ideally
suited
investigating
traits.
Plants,
Journal Year:
2025,
Volume and Issue:
14(1), P. 109 - 109
Published: Jan. 2, 2025
Pedunculate
oak
(Quercus
robur
L.)
is
widely
distributed
across
Europe
and
serves
critical
ecological,
economic,
recreational
functions.
Investigating
its
responses
to
stressors
such
as
drought,
extreme
temperatures,
pests,
pathogens
provides
valuable
insights
into
capacity
adapt
climate
change.
Genetic
dendrochronological
studies
offer
complementary
perspectives
on
this
adaptability.
Tree-ring
analysis
(dendrochronology)
reveals
how
Q.
has
historically
responded
environmental
stressors,
linking
growth
patterns
specific
conditions
drought
or
temperature
extremes.
By
examining
tree-ring
width,
density,
dynamics,
researchers
can
identify
periods
of
suppression
enhancement
predict
forest
future
climatic
events.
further
complement
by
uncovering
adaptive
genetic
diversity
inheritance
patterns.
Identifying
markers
associated
with
stress
tolerance
enables
managers
prioritize
the
conservation
populations
higher
potential.
These
guide
reforestation
efforts
support
development
climate-resilient
populations.
integrating
data,
gain
a
holistic
understanding
robur’s
mechanisms
resilience.
This
knowledge
vital
for
management
sustainable
planning
in
face
challenges,
ultimately
helping
ensure
long-term
viability
their
ecosystems.
The
topics
covered
review
are
very
broad.
We
tried
include
most
relevant,
important,
significant
studies,
but
focused
mainly
relatively
recent
Eastern
European
because
they
species’
area.
However,
although
more
than
270
published
works
have
been
cited
review,
we
have,
course,
missed
some
studies.
apologize
advance
authors
those
relevant
that
not
cited.
New Phytologist,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 11, 2025
Summary
White
oak
(
Quercus
alba
)
is
an
abundant
forest
tree
species
across
eastern
North
America
that
ecologically,
culturally,
and
economically
important.
We
report
the
first
haplotype‐resolved
chromosome‐scale
genome
assembly
of
Q.
conduct
comparative
analyses
structure
gene
content
against
other
published
Fagaceae
genomes.
investigate
genetic
diversity
this
widespread
phylogenetic
relationships
among
oaks
using
whole
data.
Despite
strongly
conserved
chromosome
synteny
size
,
certain
families
have
undergone
rapid
changes
in
size,
including
defense
genes.
Unbiased
annotation
resistance
(R)
genes
revealed
overall
number
R
similar
–
as
are
chromosomal
locations
clusters
but,
within
more
labile.
found
has
high
diversity,
much
which
predates
its
divergence
from
likely
impacts
time
estimations.
Our
results
highlight
discordance
genus.
The
white
represents
a
major
new
resource
for
studying
evolution
.
Additionally,
we
show
unbiased
key
to
accurately
assessing
International Journal of Molecular Sciences,
Journal Year:
2022,
Volume and Issue:
23(2), P. 966 - 966
Published: Jan. 16, 2022
Due
to
the
economic
and
ecological
importance
of
forest
trees,
modern
breeding
genetic
manipulation
trees
have
become
increasingly
prevalent.
The
CRISPR-based
technology
provides
a
versatile,
powerful,
widely
accepted
tool
for
analyzing
gene
function
precise
modification
in
virtually
any
species
but
remains
largely
unexplored
species.
Rapidly
accumulating
genomic
resources
enabled
identification
numerous
genes
biological
processes
that
are
associated
with
important
traits
such
as
wood
quality,
drought,
or
pest
resistance,
facilitating
selection
suitable
editing
targets.
Here,
we
introduce
discuss
latest
progress,
opportunities,
challenges
genome
sequencing
improving
sustainability.
Cladistics,
Journal Year:
2024,
Volume and Issue:
40(4), P. 357 - 373
Published: Jan. 10, 2024
Resolving
evolutionary
relationships
among
closely
related
species
with
interspecific
gene
flow
is
challenging.
Genome-scale
data
provide
opportunities
to
clarify
complex
in
and
observe
variations
across
the
genomes
of
such
species.
The
Himalayan-Hengduan
subalpine
oaks
have
a
nearly
completely
sympatric
distribution
southwest
China
probably
constitute
syngameon.
In
this
study,
we
mapped
resequencing
from
different
group
Quercus
aquifolioides
reference
genome
obtain
high-quality
filtered
single
nucleotide
polymorphism
(SNP)
dataset.
We
also
assembled
their
plastomes.
reconstructed
phylogenetic
relationships,
explored
level
pattern
introgression
these
investigated
tree
variation
using
sliding
windows.
same
or
plastomes
were
found
be
shared
extensively
within
specific
geographical
area.
Phylogenomic
analyses
genome-wide
SNP
that
most
clade
showed
genetic
coherence,
but
several
connected
by
introgression.
trees
obtained
windows
are
highly
heterogeneous
therefore
obscured.
Our
study
all
form
obscured
observed
empirically
best
explained
conjunction
incomplete
lineage
sorting.
Northern
red
oak
(Quercus
rubra
L.)
is
an
ecologically
and
economically
important
forest
tree
native
to
North
America.
We
present
a
chromosome-scale
genome
of
Q.
generated
by
the
combination
PacBio
sequences
chromatin
conformation
capture
(Hi-C)
scaffolding.
This
first
reference
from
clade
(section
Lobatae).
The
assembly
spans
739
Mb
with
95.27%
in
12
chromosomes
33,333
protein-coding
genes.
Comparisons
genomes
Quercus
lobata
mongolica
revealed
high
collinearity,
intrachromosomal
structural
variants
present.
Orthologous
gene
family
analysis
other
species
that
families
associated
defense
response
were
expanding
contracting
simultaneously
across
genome.
had
most
CC-NBS-LRR
TIR-NBS-LRR
resistance
genes
out
9
analyzed.
Terpene
synthase
comparisons
further
reveal
tandem
duplications
TPS-b
subfamily,
similar
robur.
Phylogenetic
also
identified
4
subfamilies
IGT/LAZY
for
plant
structure.
Single
major
QTL
regions
vegetative
bud
break
marcescence,
which
contain
candidate
research,
including
putative
ortholog
circadian
clock
constituent
cryptochrome
(CRY2)
8
tandemly
duplicated
serine
protease
inhibitors,
respectively.
Genome-environment
associations
natural
populations
abiotic
stress
tolerance
predicted
performance
common
garden.
high-quality
represents
essential
resource
genomic
community,
will
expedite
comparative
genomics
biological
studies
species.
Annals of Forest Science,
Journal Year:
2024,
Volume and Issue:
81(1)
Published: May 21, 2024
Abstract
Key
message
Mining
genome-wide
DNA
sequences
enabled
the
discovery
of
near-diagnostic
markers
for
species
assignment
in
four
European
white
oaks
(
Quercus
petraea
(Matt.)
Liebl.,
pubescens
Willd.,
pyrenaica
and
robur
L.)
despite
their
low
interspecific
differentiation.
Near-diagnostic
are
almost
fully
fixed
one
absent
three
others.
As
a
result,
only
handful
needed
identification,
making
this
genetic
assay
very
promising
operational
taxonomic
procedure
research
forestry.
Context
Identifying
oak
complex
has
been
long-standing
concern
taxonomy,
evolution,
forest
research,
management.
Q.
L.,
Willd.
part
western
temperate
Europe
hybridize
mixed
stands,
challenging
identification.
Aims
Our
aim
was
to
identify
single-nucleotide
polymorphisms
(SNPs)
each
that
suitable
routine
use
rapid
diagnosis
applied
Methods
We
first
scanned
existing
whole-genome
target-capture
data
sets
reduced
number
samples
(training
set)
candidate
diagnostic
SNPs,
i.e.,
genomic
positions
being
characterized
by
reference
allele
alternative
all
other
species.
Allele
frequencies
candidates
SNPs
were
then
explored
larger,
range-wide
sample
populations
(validation
step).
Results
found
subset
38
(10
,
7
9
12
)
showed
features
across
distribution
ranges
with
exhibiting
highest
(0.876)
lowest
(0.747)
diagnosticity,
respectively.
Conclusions
provide
new,
efficient,
reliable
molecular
tool
identification
which
can
be
used
as
This
study
highlights
resolution
offered
sequencing
design
marker
assignment,
even
complexes
relatively
International Journal of Molecular Sciences,
Journal Year:
2022,
Volume and Issue:
23(17), P. 9980 - 9980
Published: Sept. 1, 2022
The
holm
oak
(Quercus
ilex
L.)
is
the
dominant
tree
species
of
Mediterranean
forest
and
Spanish
agrosilvopastoral
ecosystem,
“dehesa.”
It
has
been,
since
prehistoric
period,
an
important
part
Iberian
population
from
a
social,
cultural,
religious
point
view,
providing
ample
variety
goods
services,
forming
basis
economy
in
rural
areas.
Currently,
there
renewed
interest
its
use
for
dietary
diversification
sustainable
food
production.
cultural
richness,
both
economically
(tangible)
environmentally
(intangible),
must
be
preserved
future
generations.
However,
worrisome
degradation
associated
ecosystems
occurring,
observed
increase
decline
mortality,
which
requires
urgent
action.
Breeding
programs
based
on
selection
elite
genotypes
by
molecular
markers
only
plausible
biotechnological
approach.
To
this
end,
authors’
group
started,
2004,
research
line
aimed
at
characterizing
biology
Q.
ilex.
been
challenging
task
due
to
biological
characteristics
(long
life
cycle,
allogamous,
high
phenotypic
variability)
recalcitrant
nature.
characterized
following
central
dogma
using
omics
cascade.
Molecular
responses
biotic
abiotic
stresses,
as
well
seed
maturation
germination,
are
two
main
objectives
our
research.
contributions
knowledge
level
DNA-based
markers,
genomics,
epigenomics,
transcriptomics,
proteomics,
metabolomics
discussed
here.
Moreover,
data
compared
with
those
reported
Quercus
spp.
All
generated,
genome
available,
will
integrated
morphological
physiological
systems
direction.
Thus,
we
propose
possible
related
resilient
productive
used
reforestation
programs.
In
addition,
nutritional
value
acorn
derivate
products,
bioactive
compounds
(peptides
phenolics)
allergens,
suggested.
Subsequently,
selected
validated
genome-wide
association
functional
genomic
analyses.
Evolutionary Applications,
Journal Year:
2025,
Volume and Issue:
18(2)
Published: Feb. 1, 2025
Although
many
tree
species
frequently
hybridize
and
backcross,
management
decisions
in
forestry
nature
conservation
are
usually
concentrated
on
pure
species.
Therefore,
understanding
which
environmental
factors
drive
the
distribution
admixture
of
a
local
stand
scale
is
great
interest
to
support
decision-making
establishment
resilient
forests.
Here,
we
extensively
sampled
mixed
hybridizing
white
oaks
(Quercus
petraea
Q.
pubescens)
near
Lake
Neuchâtel
(Switzerland),
where
limestone
glacier
moraine
geologies
coexist
proximity,
test
whether
micro-environmental
conditions
can
predict
taxonomic
genetic
admixture.
We
collected
DNA
from
bud
tissue,
individual
soil
samples,
extracted
high-resolution
topographic
data
for
385
oak
trees.
used
50
species-discriminatory
single
nucleotide
polymorphism
(SNP)
markers
determine
composition
levels
trees
tested
their
association
with
conditions.
show
that
trees'
be
explained
mainly
by
geographic
position,
pH,
potential
rooting
depth,
proxy
water
availability.
found
admixed
individuals
tend
grow
habitats
characteristic
more
drought-tolerant
pubescens
rather
than
intermediate
habitats.
Using
situ
measurements,
first
fine-scale
variation
properties
related
pH
availability
potentially
drives
stand.
Microenvironmental
therefore
promotes
diversity,
facilitates
adaptive
introgression,
contributes
resilience
forests
under
change.
Consequently,
such
as
should
managed
protected
complex
Forests,
Journal Year:
2023,
Volume and Issue:
14(4), P. 777 - 777
Published: April 10, 2023
Quercus
spp.
have
formed
broad-leaved
evergreen
forests
in
the
Hindu
Kush
and
Himalayan
regions
of
Pakistan.
Seven
species
genus
(Q.
baloot
Griff.,
Q.
dilatata
Royle.,
glauca
Thunb.,
incana
Roxb.,
robur
Linn.,
semecarpifolia
Smith.,
leucotrichophora
A.
Camus.)
been
identified.
These
received
little
attention
compared
with
other
economically
valuable
plant
Pakistan,
which
has
mainly
linked
to
traditional
medicine
identification
phytonutrients
evaluate
their
bioactivities
toxicological
effects.
are
promising
for
commercial
applications,
so
government
policy
should
encourage
management
conservation.
However,
they
currently
threatened
by
severe
human
activities
climate
change.
The
goal
this
review
is
highlight
relevance
these
forgotten
species,
describing
overall
aspects
related
distribution,
morphology,
uses,
phytochemical
constituents,
threats.
To
date,
no
proper
comprehensive
molecular
studies
on
populations
found
Pakistan
conducted,
a
critical
gap
as
essential
conservation
strategies.
Finally,
we
discuss
future
directions
approaches
that
follow
strategies
being
used
not
Forests,
Journal Year:
2023,
Volume and Issue:
14(12), P. 2279 - 2279
Published: Nov. 21, 2023
The
genetic
composition
of
5797
white
oaks
assigned
in
forest
inventories
as
Quercus
robur
(3342),
petraea
(2090),
pubescens
(170),
or
unspecified
Quercus.
spp.
(195)
sampled
all
over
Europe
were
genotyped
at
355
nuclear
SNPs
and
28
maternally
inherited
the
chloroplast
mitochondria.
sampling
had
a
focus
on
Central
Eastern
Europe,
well
Black
Sea
Caucasus
region.
Using
sparse
nonnegative
matrix
factorization
(snmf)
algorithm,
information
was
best
represented
by
K
=
4
different
clusters,
whereas
principal
component
analysis
visualized
three
groups.
snmf
run
with
3
corresponded,
for
most
individuals
assignment
inventories,
to
species.
majority
samples
(88%)
an
admixture
coefficient
q
>
0.8
one
species
underlining
integrity
minor
level
admixture.
In
contrast
Q.
petraea,
showed
clear
geographic
substructure.
These
large-scale
within-species
structures
correlated
regionally
variable
levels
introgression
between
For
from
less
focused
particular
regions,
this
widespread
inter-specific
gene
flow
reduced
differentiation.
variation
led
12
haplotypes
cross-species
pattern,
further
supporting
observation
significant
hybridization
among