Breeding potential of red- and white-skinned onion ( Allium cepa L.) genotypes for economic traits using multivariate analysis DOI

Prianka Saha,

Amit Baran Sharangi,

Subhrajyoti Sengupta

et al.

International Journal of Vegetable Science, Journal Year: 2024, Volume and Issue: unknown, P. 1 - 19

Published: Nov. 18, 2024

The improvement of onion (Allium cepa L.) depends on the characterization and evaluation germplasm to find superior genotypes with desired horticultural qualities utilization diversity in future breeding. study aimed evaluate advanced breeding lines (consisting both red- white-skinned types) through genetic component analyses divergence using multivariate analysis identify that can be utilized for table dehydration purposes, respectively. Genotypes '(EM-AVT-2) REC-21-48,' '(RIET) RVA-21-01,' REC-21-46' were found high yielders. Higher estimates genotypic coefficient variation, heritability advance percentage double bulb, total soluble solid, reducing sugar contents indicate additive gene action, selection based these parameters would more reliable. plant height, polar diameter, equatorial neck thickness emerged as important indices. Principal components such number leaves per plant, bolting bulb had values >1, accounting 81.73% variation. Based mean analysis, (red-skinned), REC-21-52' '(WIET) WVA-21-47' (white-skinned), '(WAVT-2) WVC-21-74' WVA-21-39' (white-skinned) '(WHTSS-AVT-2) WTC-21-84' could potential genitors purpose.

Language: Английский

Genetic diversity and population structure studies of West African sweetpotato [Ipomoea batatas (L.) Lam] collection using DArTseq DOI Creative Commons
Issa Zakari Mahaman Mourtala,

Arnaud Comlan Gouda,

Dan-jimo Baina

et al.

PLoS ONE, Journal Year: 2025, Volume and Issue: 20(1), P. e0312384 - e0312384

Published: Jan. 3, 2025

Background Sweetpotato is a vegetatively propagated crop cultivated worldwide, predominantly in developing countries, valued for its adaptability, short growth cycle, and high productivity per unit land area. In most sub-Saharan African (SSA) it widely grown by smallholder farmers. Niger, Nigeria, Benin have huge diversity of sweetpotato accessions whose potential has not fully been explored to date. Diversity Arrays Technology (DArTseq), Genotyping Sequencing (GBS) method, developed enables genotyping with high-density single nucleotide polymorphisms (SNPs) different species. The aim this study was assess the genetic population structure West collection using through (GBS). Results 29,523 (DArTseq) polymorphism markers were used genotype 271 accessions. Genetic analysis revealed an average polymorphic information content (PIC) value 0.39, minor allele frequency 0.26, observed heterozygosity 10%. highest (0.41) chromosomes 4, while proportion heterozygous (He) (0.18) 11. Molecular values sites (Ps), theta (θ), (π) 0.973, 0.158, 0.086, respectively, which indicated variation. pairs distances range from 0.08 0.47 overall 0.34. Population divided into four populations (population 1 characterised mixture all countries; 2, mostly comprised Nigerian breeding lines; 3 contained exclusively landraces Benin; 4 composed only countries) at K = molecular variance (AMOVA) based on PhiPT showed that variation explained when categorized (25.25%) cluster (19.43%). distance group (which constituted Niger Benin) genetically distant (0.428) groups 2 (formed 75% lines Nigeria), closest (0.182) 2. Conclusions This employed 7,591 DArTseq-based SNP markers, revealing extensive within between populations. Variability among countries origin (11.42%) exceeded biological status (9.13%) storage root flesh colour (7.90%), emphasizing impact migration diversity. principal component (PCA), Neighbor-Joining (NJ) tree, STRUCTURE grouped distinct clusters, irrespective their geographic origins, indicating widespread exchange. Group dominated (95%), significant differentiation (Nei’s Gst 0.428) mainly comprising lines, suggesting as heterotic initiatives like HEBS or ABS.

Language: Английский

Citations

1
Genetic Diversity and Population Structure Analysis of Excellent Sugar Beet (Beta vulgaris L.) Germplasm Resources DOI Creative Commons
Fei Peng, Zhi Pi, Shengnan Li

et al.

Horticulturae, Journal Year: 2024, Volume and Issue: 10(2), P. 120 - 120

Published: Jan. 25, 2024

This study analyzed the genetic diversity, population structure, and cluster analysis of 129 sugar beet germplasm resources to screen superior germplasms for breeding using 27 simple sequence repeat (SSR) 33 pairs insertion–deletion (InDel) molecular markers. After integrating phenotypic variation 16 descriptive 4 qualitative variables, levels germplasms’ traits were principal component (PCA), correlation analysis, variance methods. The diversity examination markers showed a polymorphism information content (PIC) 0.419–0.773 (mean = 0.610). Moreover, mean number effective alleles detected via SSR InDel was 3.054 2.298, respectively. Meanwhile, PIC ranged from 0.130 0.602 0.462). structure revealed most appropriate K-value, indicating three populations (K 3). distances 0.099 0.466 0.283). results demonstrated that grouped into primary classes. Based on variance, two features with highest coefficients petiole width (16.64%) length (17.11%). trait root index (1.395) exhibited greatest diversity. PCA reduced 20 five components, contributing 51.151%. this provide theoretical foundation future selection resources.

Language: Английский

Citations

5
Genomic profiling reveals intraspecific divergence and interspecific diversity in Allium cepa L. DOI

N. C. J. Packia Lekshmi,

J. Raja Brindha, Duraisamy Mahamuni

et al.

Genetic Resources and Crop Evolution, Journal Year: 2024, Volume and Issue: 71(7), P. 3673 - 3695

Published: Feb. 1, 2024

Language: Английский

Citations

2
Exploring Genetic Diversity and Phylogenetic Relationships in Camellia reticulata Cultivars Using Novel Low-Copy Nuclear Gene Markers DOI Creative Commons
Xiaodan Xu, Ya Gao,

Wei Zheng

et al.

Horticulturae, Journal Year: 2024, Volume and Issue: 10(3), P. 303 - 303

Published: March 21, 2024

This study delves into the exploration of genetic diversity and phylogenetic relationships within Camellia reticulata cultivars, providing a vital reference for horticultural research on this hetero-hexaploid species. Utilizing available transcriptome data from C. reticulata, novel low-copy nuclear gene sequences were successfully identified. With tailored primer design, these genes amplified sequenced 100 cultivars originating Kunming, Chuxiong, Dali, Tengchong in China. Five distinct found to collectively span 3481 bp, showcasing 71 polymorphic mutation sites (Pi = 0.0077) 91 haplotypes (Hd 0.9974). The among four provenances ranked > Dali Kunming Chuxiong. AMOVA analysis revealed that 96.50% variation exists provenances. Low distance differentiation (Fst= 0.0199) observed Ninety-nine clustered clades, corresponding three ancestors (diploid pitardii, saluenensis). sequence markers developed provide an effective tool analyzing diversity, relationships, origination cultivars.

Language: Английский

Citations

2
Phenotypic and molecular characterization of vernalization sensitivity and pre-mature bolting in onion (Allium cepa L.) DOI
G. R. Verma, Jiffinvir Singh Khosa, Madhu Sharma

et al.

Genetic Resources and Crop Evolution, Journal Year: 2024, Volume and Issue: unknown

Published: May 27, 2024

Language: Английский

Citations

1
Genetic diversity of a Silybum marianum (L.) Gaertn. germplasm collection revealed by DNA Diversity Array Technology (DArTseq) DOI Creative Commons
Damiano Puglisi, Marianna Pasquariello, Tommaso Martinelli

et al.

PLoS ONE, Journal Year: 2024, Volume and Issue: 19(8), P. e0308368 - e0308368

Published: Aug. 7, 2024

Silybum marianum (L.) Gaertn. is a multipurpose crop native to the Mediterranean and middle east regions mainly known for hepatoprotective properties of fruit-derived silymarin. Despite growing interest in milk thistle as versatile with medicinal value, its potential agroindustry hindered by incomplete domestication limited genomic knowledge, impeding development competitive breeding programs. The present study aimed evaluate genetic diversity panel S. accessions (n = 31), previously characterized morphological phytochemical traits, using 5,178 polymorphic DArTseq SNP markers. structure investigated both parametric non-parametric approaches (e.g. PCA, AWclust, Admixture), revealed three distinctive groups reflecting geographical origins. Indeed, Pop1 grouped from Central Europe UK, Pop3 consisted Italian origin, Pop2 included different areas. Interestingly, genotypes showed divergent phenotypic distribution, particularly fruit oleic linoleic acid content, compared other two groups. Genetic differentiation among groups, computing pairwise fixation index (FST), confirmed greater subpopulations, also based on indices private alleles, heterozygosity). Finally, 22 markers were declared putatively under natural selection, which seven significantly affected some important traits such oleic, arachidonic, behenic content. These findings suggest that these markers, overall, identified within Pop3, could be exploited specific programs, potentially at diversifying use thistle. incorporating material haplotypes carrying selected loci into populations might basis developing lines higher levels acids, lower acid, paving new avenues enhancing nutritional agronomic characteristics

Language: Английский

Citations

1
Simple recurrent selection-mediated improvement in quantitative traits of white onion DOI
Vijay Mahajan, Hem Raj Bhandari, Puthem Robindro Singh

et al.

Vegetos, Journal Year: 2024, Volume and Issue: unknown

Published: Aug. 29, 2024

Language: Английский

Citations

0
Breeding potential of red- and white-skinned onion ( Allium cepa L.) genotypes for economic traits using multivariate analysis DOI

Prianka Saha,

Amit Baran Sharangi,

Subhrajyoti Sengupta

et al.

International Journal of Vegetable Science, Journal Year: 2024, Volume and Issue: unknown, P. 1 - 19

Published: Nov. 18, 2024

The improvement of onion (Allium cepa L.) depends on the characterization and evaluation germplasm to find superior genotypes with desired horticultural qualities utilization diversity in future breeding. study aimed evaluate advanced breeding lines (consisting both red- white-skinned types) through genetic component analyses divergence using multivariate analysis identify that can be utilized for table dehydration purposes, respectively. Genotypes '(EM-AVT-2) REC-21-48,' '(RIET) RVA-21-01,' REC-21-46' were found high yielders. Higher estimates genotypic coefficient variation, heritability advance percentage double bulb, total soluble solid, reducing sugar contents indicate additive gene action, selection based these parameters would more reliable. plant height, polar diameter, equatorial neck thickness emerged as important indices. Principal components such number leaves per plant, bolting bulb had values >1, accounting 81.73% variation. Based mean analysis, (red-skinned), REC-21-52' '(WIET) WVA-21-47' (white-skinned), '(WAVT-2) WVC-21-74' WVA-21-39' (white-skinned) '(WHTSS-AVT-2) WTC-21-84' could potential genitors purpose.

Language: Английский

Citations

0