Briefings in Bioinformatics,
Journal Year:
2022,
Volume and Issue:
23(4)
Published: June 26, 2022
Carcinomas
are
complex
ecosystems
composed
of
cancer,
stromal
and
immune
cells.
Communication
between
these
cells
their
microenvironments
induces
cancer
progression
causes
therapy
resistance.
In
order
to
improve
the
treatment
cancers,
it
is
essential
quantify
crosstalk
within
various
cell
types
in
a
tumour
microenvironment.
Focusing
on
coordinated
expression
patterns
ligands
cognate
receptors,
cell-cell
communication
can
be
inferred
through
ligand-receptor
interactions
(LRIs).
this
manuscript,
we
carry
out
following
work:
(i)
introduce
pipeline
for
ligand-receptor-mediated
intercellular
estimation
from
single-cell
transcriptomics
list
few
available
LRI-related
databases
visualization
tools;
(ii)
demonstrate
seven
classical
scoring
strategies,
highlight
four
representative
inference
methods,
including
network-based
approaches,
machine
learning-based
spatial
information-based
approaches
other
approaches;
(iii)
summarize
evaluation
validation
avenues
analyze
advantages
limitations
above
methods;
(iv)
comment
several
major
challenges
while
provide
further
research
directions
analysis
microenvironments.
We
anticipate
that
work
helps
better
understand
develop
powerful
tools
tumor-targeted
therapy.
Cell Communication and Signaling,
Journal Year:
2020,
Volume and Issue:
18(1)
Published: April 7, 2020
Abstract
The
dynamic
interactions
of
cancer
cells
with
their
microenvironment
consisting
stromal
(cellular
part)
and
extracellular
matrix
(ECM)
components
(non-cellular)
is
essential
to
stimulate
the
heterogeneity
cell,
clonal
evolution
increase
multidrug
resistance
ending
in
cell
progression
metastasis.
reciprocal
cell-cell/ECM
interaction
tumor
hijacking
non-malignant
force
lose
function
acquire
new
phenotypes
that
promote
development
invasion
cells.
Understanding
underlying
cellular
molecular
mechanisms
governing
these
can
be
used
as
a
novel
strategy
indirectly
disrupt
interplay
contribute
efficient
safe
therapeutic
strategies
fight
cancer.
Furthermore,
tumor-derived
circulating
materials
also
diagnostic
tools
precisely
predict
monitor
outcome
therapy.
This
review
evaluates
such
potentials
various
advanced
models,
focus
on
3D
systems
well
lab-on-chip
devices.
Medicina,
Journal Year:
2019,
Volume and Issue:
56(1), P. 15 - 15
Published: Dec. 30, 2019
The
tumor
microenvironment
has
been
widely
implicated
in
tumorigenesis
because
it
harbors
cells
that
interact
with
surrounding
through
the
circulatory
and
lymphatic
systems
to
influence
development
progression
of
cancer.
In
addition,
nonmalignant
play
critical
roles
all
stages
carcinogenesis
by
stimulating
facilitating
uncontrolled
cell
proliferation.This
study
aims
explore
concept
conducting
a
review
previous
studies
on
topic.
Materials
Methods:
This
relies
evidence
presented
related
articles
included
this
were
obtained
from
different
medical
health
databases.The
received
significant
attention
cancer
literature,
particular
focus
its
role
progression.
Previous
have
identified
various
components
malignant
behavior
addition
cells,
adipocytes,
fibroblasts,
vasculature,
lymphocytes,
dendritic
cancer-associated
fibroblasts
are
present
microenvironment.
Each
these
types
unique
immunological
capabilities
determine
whether
will
survive
affect
neighboring
cells.The
stem
other
molecules
contribute
Consequently,
targeting
manipulating
factors
during
treatment
can
help
control
malignancies
achieve
positive
outcomes.
International Journal of Molecular Sciences,
Journal Year:
2019,
Volume and Issue:
20(19), P. 4947 - 4947
Published: Oct. 7, 2019
The
extracellular
matrix
(ECM)
is
a
complex
network
of
extracellular-secreted
macromolecules,
such
as
collagen,
enzymes
and
glycoproteins,
whose
main
functions
deal
with
structural
scaffolding
biochemical
support
cells
tissues.
ECM
homeostasis
essential
for
organ
development
functioning
under
physiological
conditions,
while
its
sustained
modification
or
dysregulation
can
result
in
pathological
conditions.
During
cancer
progression,
epithelial
tumor
may
undergo
epithelial-to-mesenchymal
transition
(EMT),
morphological
functional
remodeling,
that
deeply
alters
cell
features,
leading
to
loss
markers
(i.e.,
E-cadherin),
changes
polarity
intercellular
junctions
increase
mesenchymal
N-cadherin,
fibronectin
vimentin).
This
process
enhances
detachment
from
the
original
mass
invasiveness,
which
are
necessary
metastasis
onset,
thus
allowing
enter
bloodstream
lymphatic
flow
colonize
distant
sites.
mechanisms
lead
metastases
specific
sites
still
largely
obscure
but
modifications
occurring
target
tissue
being
intensively
studied.
Matrix
metalloproteases
several
adhesion
receptors,
among
integrins
play
key
role,
involved
metastasis-linked
modifications.
In
addition,
metastatic
niche
formation,
like
associated
fibroblasts
(CAF)
macrophages
(TAM),
have
been
found
crucial
roles
alterations
aimed
at
promoting
growth.
this
review
we
focus
on
molecular
during
progression
dissemination
sites,
special
attention
lung,
liver
bone.
Moreover,
role
forming
will
also
be
reviewed
light
most
recent
findings.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2020,
Volume and Issue:
unknown
Published: May 31, 2020
ABSTRACT
Spatial
Transcriptomics
is
an
emerging
technology
that
adds
spatial
dimensionality
and
tissue
morphology
to
the
genome-wide
transcriptional
profile
of
cells
in
undissociated
tissue.
Integrating
these
three
types
data
creates
a
vast
potential
for
deciphering
novel
biology
cell
their
native
morphological
context.
Here
we
developed
innovative
integrative
analysis
approaches
utilise
all
first
find
types,
then
reconstruct
type
evolution
within
tissue,
search
regions
with
high
cell-to-cell
interactions.
First,
normalisation
gene
expression,
compute
distance
measure
using
similarity
neighbourhood
smoothing.
The
normalised
used
clusters
represent
profiles
specific
cellular
phenotypes.
Clusters
are
further
sub-clustered
if
spatially
separated.
Analysing
anatomical
mouse
brain
sections
12
human
datasets,
found
clustering
method
more
accurate
sensitive
than
other
methods.
Second,
introduce
calculate
states
by
pseudo-space-time
(PST)
distance.
PST
function
physical
(spatial
distance)
expression
(pseudotime
estimate
pairwise
between
among
We
transition
gradients
connected
locally
cluster,
or
globally
clusters,
directed
minimum
spanning
tree
optimisation
approach
algorithm
could
model
from
non-invasive
invasive
breast
cancer
dataset.
Third,
information
identify
locations
where
there
both
ligand-receptor
interaction
activity
diverse
co-localisation.
These
predicted
be
hotspots
cell-cell
interactions
likely
occur.
detected
pairs
significantly
enriched
compared
background
distribution
across
Together,
algorithms,
implemented
comprehensive
Python
software
stLearn,
allow
elucidation
biological
processes
healthy
diseased
tissues.
F1000Research,
Journal Year:
2020,
Volume and Issue:
9, P. 229 - 229
Published: April 2, 2020
Oral
squamous
cell
carcinoma
(OSCC)
is
a
commonly
occurring
head
and
neck
cancer.
It
has
high
prevalence
in
certain
parts
of
the
world,
associated
with
mortality
rate.
In
this
review,
we
describe
metastasis
related
to
OSCC,
disorders
that
could
lead
OSCC
common
etiological
factors.
addition,
brief
account
diagnosis
role
salivary
biomarkers
its
early
detection
also
been
highlighted.
Google
Scholar
PubMed
search
engines
were
searched
keywords
including
"oral
carcinoma",
"OSCC",
cancer",
"potentially
malignant
oral
cavity",
"etiological
factors
OSCC",
"diagnosis
"salivary
OSCC"
gather
literature
for
review.
The
review
concludes
potential
regional
as
well
distant
metastasis,
many
potentially
diseases
can
transform
into
help
various
Diagnosis
involves
traditional
biopsy,
but
be
utilized
recognition.
Molecular Cancer,
Journal Year:
2023,
Volume and Issue:
22(1)
Published: Oct. 2, 2023
Abstract
Despite
centuries
since
the
discovery
and
study
of
cancer,
cancer
is
still
a
lethal
intractable
health
issue
worldwide.
Cancer-associated
fibroblasts
(CAFs)
have
gained
much
attention
as
pivotal
component
tumor
microenvironment.
The
versatility
sophisticated
mechanisms
CAFs
in
facilitating
progression
been
elucidated
extensively,
including
promoting
angiogenesis
metastasis,
inducing
drug
resistance,
reshaping
extracellular
matrix,
developing
an
immunosuppressive
Owing
to
their
robust
tumor-promoting
function,
are
considered
promising
target
for
oncotherapy.
However,
highly
heterogeneous
group
cells.
Some
subpopulations
exert
inhibitory
role
growth,
which
implies
that
CAF-targeting
approaches
must
be
more
precise
individualized.
This
review
comprehensively
summarize
origin,
phenotypical,
functional
heterogeneity
CAFs.
More
importantly,
we
underscore
advances
strategies
clinical
trials
CAF
various
cancers,
also
progressions
immunotherapy.
Frontiers in Cell and Developmental Biology,
Journal Year:
2021,
Volume and Issue:
9
Published: March 1, 2021
Cancer
is
a
disease
which
frequently
has
poor
prognosis.
Although
multiple
therapeutic
strategies
have
been
developed
for
various
cancers,
including
chemotherapy,
radiotherapy,
and
immunotherapy,
resistance
to
these
treatments
impedes
the
clinical
outcomes.
Besides
active
driven
by
genetic
epigenetic
alterations
in
tumor
cells,
microenvironment
(TME)
also
reported
be
crucial
regulator
tumorigenesis,
progression,
resistance.
Here,
we
propose
that
adaptive
mechanisms
of
are
closely
connected
with
TME
rather
than
depending
on
non-cell-autonomous
changes
response
treatment.
comprehensive
understanding
need
further
investigation
fully
elucidate
resistance,
many
targeting
successful.
In
this
review,
report
recent
advances
concerning
molecular
events
important
factors
involved
TME,
particularly
focusing
contributions
provide
insights
into
potential
methods
or
translational
medicine
overcome
therapy