BMC Genomics,
Journal Year:
2023,
Volume and Issue:
24(1)
Published: May 4, 2023
Abstract
Background
N
6
-methyladenosine
(m
A)
refers
to
the
methylation
modification
of
position
RNA
adenine,
a
dynamic
reversible
epigenetic
that
plays
an
important
regulatory
role
in
variety
life
processes.
In
this
study,
we
used
MeRIP-Seq
and
RNA-Seq
longissimus
dorsi
(LD)
muscle
adult
(QA)
newborn
(QN)
Queshan
Black
pigs
screen
key
genes
with
m
A
involved
growth
by
bioinformatics
analysis.
Results
total
23,445
25,465
peaks
were
found
whole
genomes
QA
QN,
respectively.
Among
them,
613
significantly
different
(DMPs)
579
defined
as
differentially
methylated
(DMGs).
Compared
QN
group,
there
1,874
expressed
(DEGs)
including
620
up-regulated
1,254
down-regulated
genes.
order
investigate
relationship
between
mRNA
expression
at
periods,
combined
analysis
showed
88
both
levels.
Gene
Ontology
Kyoto
Encyclopedia
Genes
Genomes
results
DEGs
DMGs
mainly
skeletal
tissue
development,
FoxO
signaling
pathway,
MAPK
insulin
PI3K–Akt
Wnt
pathway.
Four
(
IGF1R
,
CCND2
MYOD1
FOS
)
four
PHKB
BIN1
FUT2
),
which
are
closely
related
selected
candidate
for
verification,
consistent
sequencing
results,
indicated
reliability
results.
Conclusions
These
lay
foundation
understanding
specific
mechanisms
pigs,
provide
theoretical
references
further
research
on
development
breed
optimization
selection.
International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(11), P. 5589 - 5589
Published: May 21, 2024
The
gut
microbiota
plays
a
pivotal
role
in
maintaining
the
dynamic
balance
of
intestinal
epithelial
and
immune
cells,
crucial
for
overall
organ
homeostasis.
Dysfunctions
these
intricate
relationships
can
lead
to
inflammation
contribute
pathogenesis
various
diseases.
Recent
findings
uncovered
existence
gut–muscle
axis,
revealing
how
alterations
disrupt
regulatory
mechanisms
muscular
adipose
tissues,
triggering
immune-mediated
inflammation.
In
context
Duchenne
dystrophy
(DMD),
permeability
stand
as
potential
origin
molecules
that
could
trigger
muscle
degeneration
via
pathways.
Metabolites
produced
by
bacteria,
or
fragments
bacteria
themselves,
may
have
ability
migrate
from
into
bloodstream
ultimately
infiltrate
distant
exacerbating
localized
pathologies.
These
insights
highlight
alternative
pathological
pathways
DMD
beyond
musculoskeletal
system,
paving
way
nutraceutical
supplementation
adjuvant
therapy.
Understanding
complex
interplay
between
microbiota,
health
offers
new
perspectives
therapeutic
interventions
conventional
approaches
efficiently
counteract
multifaceted
nature
DMD.
Frontiers in Nutrition,
Journal Year:
2024,
Volume and Issue:
11
Published: June 20, 2024
Background
and
Aims
Physical
performance
is
a
major
contributor
of
mobility
independence
during
older
life.
Despite
progressive
decline
in
musculoskeletal
function
starts
from
middle
age,
several
factors
acting
the
life-course
can
negatively
influence
functional
capacities.
Lifestyle
interventions
incorporating
nutrition
physical
exercise
help
maximizing
muscle
capacities
early
life
as
well
preserving
them
later
Among
various
dietary
compounds,
omega-3
polyunsaturated
fatty
acids
(PUFAs)
are
gaining
growing
attention
for
their
potential
effects
on
membrane
composition
function.
Indeed,
pathways
enhanced,
such
an
attenuation
pro-inflammatory
oxidative
stress,
mitochondrial
function,
activation
mammalian
target
rapamycin
(mTOR)
signaling
reduction
insulin
resistance.
Methods
We
performed
narrative
review
to
explore
existing
literature
relationship
between
PUFAs
across
life-course.
Results
Growing
evidence
randomized
controlled
trials
(RCTs)
suggests
beneficial
including
parameters
mid
On
other
hand,
despite
direct
association
not
available
literature,
some
mechanisms
by
which
may
contribute
improved
adult
could
be
hypothesized.
Conclusion
Omega-3
positive
effect
parameters.
The
integration
measures
future
studies
would
great
interest
whether
starting
extending
throughout
lifespan.
However,
larger
high-quality
RCTs
needed
fully
elucidate
supplementation
mass
Genomics,
Journal Year:
2021,
Volume and Issue:
113(6), P. 3827 - 3841
Published: Sept. 20, 2021
Chromatin
accessibility
is
a
key
factor
influencing
gene
expression.
We
optimized
the
Omni-ATAC-seq
protocol
and
used
it
together
with
RNA-seq
to
investigate
cis-regulatory
elements
in
rat
white
adipose
skeletal
muscle,
two
tissues
contrasting
metabolic
functions.
While
promoter
correlated
RNA
expression,
integration
of
datasets
identified
tissue-specific
differentially
accessible
regions
(DARs)
that
predominantly
localized
intergenic
intron
regions.
DARs
were
mapped
expressed
(DE)
genes
enriched
distinct
biological
processes
each
tissue.
Randomly
selected
DE
validated
by
qPCR.
Top
motifs
predicted
binding
sites
for
transcription
factors
(TFs)
showing
up-regulation.
The
correlation
between
differential
chromatin
at
given
TF
motif
expression
target
further
supported
functional
relevance
motif.
Our
study
likely
play
major
role
regulation
muscle.
Cancers,
Journal Year:
2022,
Volume and Issue:
14(9), P. 2107 - 2107
Published: April 23, 2022
Cancer
cachexia
is
a
condition
marked
by
functional,
metabolic,
and
immunological
dysfunctions
associated
with
skeletal
muscle
(SM)
atrophy,
adipose
tissue
loss,
fat
reduction,
systemic
inflammation,
anorexia.
Generally,
the
caused
variety
of
mediators
produced
cancer
cells
in
tumor
microenvironments.
Myostatin
activin
signaling,
IGF-1/PI3K/AKT
JAK-STAT
signaling
are
known
to
play
roles
cachexia,
thus,
these
pathways
considered
potential
therapeutic
targets.
This
review
discusses
current
state
knowledge
molecular
mechanisms
underlying
available
options
was
undertaken
increase
understanding
various
factors/pathways/mediators
involved
identify
treatment
options.
BMC Genomics,
Journal Year:
2023,
Volume and Issue:
24(1)
Published: May 4, 2023
Abstract
Background
N
6
-methyladenosine
(m
A)
refers
to
the
methylation
modification
of
position
RNA
adenine,
a
dynamic
reversible
epigenetic
that
plays
an
important
regulatory
role
in
variety
life
processes.
In
this
study,
we
used
MeRIP-Seq
and
RNA-Seq
longissimus
dorsi
(LD)
muscle
adult
(QA)
newborn
(QN)
Queshan
Black
pigs
screen
key
genes
with
m
A
involved
growth
by
bioinformatics
analysis.
Results
total
23,445
25,465
peaks
were
found
whole
genomes
QA
QN,
respectively.
Among
them,
613
significantly
different
(DMPs)
579
defined
as
differentially
methylated
(DMGs).
Compared
QN
group,
there
1,874
expressed
(DEGs)
including
620
up-regulated
1,254
down-regulated
genes.
order
investigate
relationship
between
mRNA
expression
at
periods,
combined
analysis
showed
88
both
levels.
Gene
Ontology
Kyoto
Encyclopedia
Genes
Genomes
results
DEGs
DMGs
mainly
skeletal
tissue
development,
FoxO
signaling
pathway,
MAPK
insulin
PI3K–Akt
Wnt
pathway.
Four
(
IGF1R
,
CCND2
MYOD1
FOS
)
four
PHKB
BIN1
FUT2
),
which
are
closely
related
selected
candidate
for
verification,
consistent
sequencing
results,
indicated
reliability
results.
Conclusions
These
lay
foundation
understanding
specific
mechanisms
pigs,
provide
theoretical
references
further
research
on
development
breed
optimization
selection.