bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: April 22, 2022
ABSTRACT
Tropical
islands
are
renowned
as
natural
laboratories
for
evolutionary
study.
Lineage
radiations
across
tropical
archipelagos
ideal
systems
investigating
how
colonization,
speciation,
and
extinction
processes
shape
biodiversity
patterns.
The
expansion
of
the
island
thrush
Indo-Pacific
represents
one
largest
yet
most
perplexing
any
songbird
species.
exhibits
a
complex
mosaic
pronounced
plumage
variation
its
range,
is
arguably
world’s
polytypic
bird.
It
sedentary
species
largely
restricted
to
mountain
forests,
it
has
colonized
vast
region
spanning
quarter
globe.
We
conducted
comprehensive
sampling
populations
obtained
genome-wide
SNP
data,
which
we
used
reconstruct
phylogeny,
population
structure,
gene
flow,
demographic
history.
evolved
from
migratory
Palearctic
ancestors
radiated
explosively
during
Pleistocene,
with
numerous
instances
flow
between
populations.
Its
bewildering
masks
biogeographically
intuitive
stepping
stone
colonization
path
Philippines
through
Greater
Sundas,
Wallacea
New
Guinea
Polynesia.
thrush’s
success
in
colonizing
mountains
can
be
understood
light
ancestral
mobility
adaptation
cool
climates;
however,
shifts
elevational
degree
apparent
dispersal
rates
eastern
part
range
raise
further
intriguing
questions
about
biology.
iScience,
Journal Year:
2021,
Volume and Issue:
24(7), P. 102821 - 102821
Published: July 1, 2021
Besides
relying
heavily
on
sensory
and
reinforcement
feedback,
motor
skill
learning
may
also
depend
the
level
of
motivation
experienced
during
training.
Yet,
how
by
reward
modulates
remains
unclear.
In
90
healthy
subjects,
we
investigated
net
effect
while
controlling
for
feedback
received
participants.
Reward
improved
beyond
performance-based
feedback.
Importantly,
beneficial
involved
a
specific
potentiation
reinforcement-related
adjustments
in
commands,
which
concerned
primarily
most
relevant
component
task
success
persisted
following
day
absence
reward.
We
propose
that
long-lasting
effects
entail
form
associative
resulting
from
repetitive
pairing
training,
mechanism
be
exploited
future
rehabilitation
protocols.
Systematic Biology,
Journal Year:
2022,
Volume and Issue:
71(6), P. 1423 - 1439
Published: June 15, 2022
Abstract
The
complex
island
archipelagoes
of
Wallacea
and
Melanesia
have
provided
empirical
data
behind
integral
theories
in
evolutionary
biology,
including
allopatric
speciation
biogeography.
Yet,
questions
regarding
the
relative
impact
layered
biogeographic
barriers,
such
as
deep-water
trenches
isolated
systems,
on
faunal
diversification
remain
underexplored.
One
barrier
is
Wallace’s
Line,
a
significant
boundary
that
largely
separates
Australian
Asian
biodiversity.
To
assess
roles
barriers—specifically
systems
Line—we
investigated
tempo
mode
diverse
avian
radiation,
Corvides
(Crows
Jays,
Birds-of-paradise,
Vangas,
allies).
We
combined
genus-level
set
thousands
ultraconserved
elements
(UCEs)
species-level,
12-gene
Sanger
sequence
matrix
to
produce
well-resolved
supermatrix
tree
we
leveraged
explore
group’s
historical
biogeography
effects
barriers
their
macroevolutionary
dynamics.
well
resolved
differs
substantially
from
what
has
been
used
extensively
for
past
comparative
analyses
within
this
group.
confirmed
Corvides,
its
major
constituent
clades,
arose
Australia
burst
dispersals
west
across
Line
occurred
after
uplift
during
mid-Miocene.
found
dispersal
was
generally
rare,
though
westward
were
two
times
more
frequent
than
eastward
dispersals.
Wallacea’s
central
position
between
Sundaland
Sahul
no
doubt
acted
bridge
island-hopping
out
Australia,
colonize
rest
Earth.
In
addition,
east
harbor
highest
rates
net
are
substantial
source
colonists
continental
both
sides
barrier.
Our
results
support
emerging
evidence
particularly
geologically
Indo-pacific,
drivers
species
diversification.
[Historical
biogeography;
Melanesia;
molecular
phylogenetics;
state-dependent
extinction.]
Evolution Letters,
Journal Year:
2023,
Volume and Issue:
unknown
Published: Jan. 31, 2023
Tropical
islands
are
renowned
as
natural
laboratories
for
evolutionary
study.
Lineage
radiations
across
tropical
archipelagos
ideal
systems
investigating
how
colonization,
speciation,
and
extinction
processes
shape
biodiversity
patterns.
The
expansion
of
the
island
thrush
Indo-Pacific
represents
one
largest
yet
most
perplexing
any
songbird
species.
exhibits
a
complex
mosaic
pronounced
plumage
variation
its
range
is
arguably
world's
polytypic
bird.
It
sedentary
species
largely
restricted
to
mountain
forests,
it
has
colonized
vast
region
spanning
quarter
globe.
We
conducted
comprehensive
sampling
populations
obtained
genome-wide
SNP
data,
which
we
used
reconstruct
phylogeny,
population
structure,
gene
flow,
demographic
history.
evolved
from
migratory
Palearctic
ancestors
radiated
explosively
during
Pleistocene,
with
numerous
instances
flow
between
populations.
Its
bewildering
masks
biogeographically
intuitive
stepping
stone
colonization
path
Philippines
through
Greater
Sundas,
Wallacea,
New
Guinea
Polynesia.
thrush's
success
in
colonizing
mountains
can
be
understood
light
ancestral
mobility
adaptation
cool
climates;
however,
shifts
elevational
range,
degree
apparent
dispersal
rates
eastern
part
raise
further
intriguing
questions
about
biology.
Archipelagoes
serve
as
important
'natural
laboratories'
which
facilitate
the
study
of
island
radiations
and
contribute
to
understanding
evolutionary
processes.
The
white-eye
genus
Zosterops
is
a
classical
example
'great
speciator',
comprising
c.
100
species
from
across
Old
World,
most
them
insular.
We
achieved
an
extensive
geographic
DNA
sampling
by
using
historical
specimens
recently
collected
samples.
Using
over
700
genome-wide
loci
in
conjunction
with
coalescent
tree
methods
gene
flow
detection
approaches,
we
untangled
reticulated
history
Zosterops,
comprises
three
main
clades
centered
Indo-Africa,
Asia,
Australasia,
respectively.
Genetic
introgression
between
permeates
phylogeny,
regardless
how
distantly
related
are.
Crucially,
identified
Indonesian
archipelago,
specifically
Borneo,
major
center
diversity
only
area
where
all
overlap,
attesting
importance
this
region.
Molecular Biology and Evolution,
Journal Year:
2022,
Volume and Issue:
39(9)
Published: Sept. 1, 2022
Abstract
Quantifying
the
magnitude
of
global
extinction
crisis
is
important
but
remains
challenging,
as
many
events
pass
unnoticed
owing
to
our
limited
taxonomic
knowledge
world’s
organisms.
The
increasing
rarity
taxa
renders
comprehensive
sampling
difficult,
further
compounding
problem.
Vertebrate
lineages
such
birds,
which
are
thought
be
taxonomically
well
understood,
therefore
used
indicator
groups
for
mapping
and
quantifying
extinction.
To
test
whether
patterns
adequately
gauged
in
well-studied
groups,
we
implemented
ancient-DNA
protocols
retrieved
whole
genomes
from
historic
DNA
museum
specimens
a
widely
known
songbird
radiation
shamas
(genus
Copsychus)
that
assumed
least
conservation
concern.
We
uncovered
cryptic
diversity
an
unexpected
degree
hidden
terminal
endangerment.
Our
analyses
reveal
>40%
phylogenetic
this
already
either
extinct
wild
or
nearly
so,
including
two
genomically
most
distinct
members
group
(omissus
nigricauda),
have
so
far
flown
under
radar
they
previously
been
considered
subspecies.
Comparing
modern
samples
with
those
roughly
century
ago,
also
found
significant
decrease
genetic
concomitant
increase
homozygosity
affecting
various
taxa,
small-island
endemics
subspecies
remain
widespread
across
continental
scale.
application
genomic
approaches
demonstrates
elevated
levels
allelic
loss
clade
has
not
listed
globally
threatened,
highlighting
importance
ongoing
reassessments
incidence
even
animal
groups.
Key
words:
extinction,
introgression,
white-rumped
shama,
conservation.
Frontiers in Ecology and Evolution,
Journal Year:
2021,
Volume and Issue:
9
Published: Dec. 8, 2021
Africa’s
montane
areas
are
broken
up
into
several
large
and
small
units,
each
isolated
as
forest-capped
“sky
islands”
in
a
“sea”
of
dry
lowland
savanna.
Many
elements
their
biota,
including
forest
birds,
shared
across
disjunct
mountains,
yet
it
has
been
difficult
to
rigorously
define
an
Afromontane
avifauna,
or
determine
its
evolutionary
relationships
with
the
birds
surrounding
forests.
In
order
trace
historical
relationship
between
highland
avifaunas,
we
review
cases
species
groups
closely
related
breeding
populations
at
different
elevations,
use
phylogeographic
methods
explore
connections
such
within
biodiversity
hotspot
East
Africa.
The
study
reveals
idiosyncratic
patterns,
but
also
prominent
number
gene
flow
southern
areas,
mainly
around
Malawi
Rift,
mountains
coastal
forests
north,
close
equator.
This
may
reflect
more
continuous
past
distributions
through
northern
Mozambique
Tanzania,
seasonal
migrations
rainfall
regimes.
Over
time,
these
distributional
dynamics
have
resulted
higher
persistence
lineages,
accumulation
forest-dependent
lineages
Eastern
Arc
Mountains
Tanzania
part
mosaic.
Ibis,
Journal Year:
2022,
Volume and Issue:
165(3), P. 817 - 828
Published: Dec. 22, 2022
White‐eyes
are
an
iconic
avian
radiation
of
small
passerines
that
mainly
distributed
across
the
eastern
hemisphere
tropics
and
subtropics.
Species
diversity
white‐eyes
is
particularly
high
on
oceanic
islands,
many
species
restricted
to
single
islands
or
island
groups.
The
rate
diversification
ranks
them
among
fastest
radiations
known
in
birds,
but
whether
their
accelerated
was
result
repeatedly
colonizing
remains
unexplored.
We
used
a
newly
estimated
timetree
for
nearly
all
zosteropids
phylogenetic
comparative
methods
estimate
compare
rates
between
continental
lineages.
show
have
similar
extinction
rates,
yet
higher
speciation
compared
with
white‐eyes.
In
addition,
we
find
transitions
from
continents.
Our
results
importance
such
as
Wallacean
Melanesian
archipelagos
Indo‐Pacific,
facilitating
within
this
remarkable
clade.
Journal of Biogeography,
Journal Year:
2021,
Volume and Issue:
49(1), P. 189 - 200
Published: Dec. 11, 2021
Abstract
Aim
Research
in
island
biogeography
has
long
focused
mainly
on
present‐day
configurations.
Recently,
there
been
an
increasing
focus
islands’
past
histories
of
land
connection,
shape
and
size.
Moreover,
continental
islands
(=shelf
islands)
have
received
less
attention
than
oceanic
islands,
species
inventories
from
extremely
small
are
lacking
many
datasets.
We
examine
the
effects
sea‐level
rise
since
Last
Glacial
Maximum
(LGM)
bird
diversity
composition
tropical
shelf
Southeast
Asia.
Location
Sundaland.
Taxon
Birds.
Methods
compiled
avifaunal
for
94
using
exhaustive
literature
review
historic
surveys
larger
combined
with
our
own
comprehensive
both
large
islands.
Using
generalised
least‐squares
models
spatial
autocorrelation,
we
assessed
importance
traditional
biogeographical
parameters
including
area,
maximum
elevation,
distance
mainland
geographical
isolation,
along
post‐LGM
change
area
duration
isolation.
also
compared
similar‐sized
two
categories—recently
submerged
unsubmerged—using
non‐metric
multidimensional
scaling.
Results
Post‐LGM
minimal
insular
is
instead
well
explained
by
characteristics,
such
as
to
proportion
surrounding
within
a
10
km
radius
(Cox
Snell
Pseudo‐
R
2
=
0.803).
Avifaunal
similar
across
recently
unsubmerged
Main
conclusion
equilibrates
rapidly
after
indicating
that
extinction
immigration
rates
high.
In
particular,
high
rate
dispersive
maintains
diversity,
especially
Over‐water
dispersal
generally
restricted
short
distances
among
Sundaic
birds.
Consequently,
can
be
maintained
presence
or
stepping‐stone
near
it.