Journal of Experimental Biology,
Journal Year:
2022,
Volume and Issue:
225(19)
Published: Oct. 1, 2022
People
tend
to
rely
on
their
eyes
understand
the
world,
but
some
fish
don't
have
or
even
light
for
illumination.
A
population
of
Astyanax
mexicanus,
‘cavefish’,
thrive
deep
in
caves
where
they
navigate
and
find
food
total
darkness.
team
researchers
based
at
University
Florida,
USA,
led
by
James
Liao,
looked
beyond
this
obvious
difference
hidden
mechanisms
behind
cavefish's
success
exploring
world
without
eyes.
They
wanted
know
if
cavefish
nervous
system
adjusted
lack
amplifying
other
senses,
specifically
sense
‘touch’,
which
detects
water
flow
through
structures
called
neuromasts
distributed
across
fish's
body.
The
compared
how
differ
between
blind
another
sighted
A.
live
streams
surface
planet
use
explore.Instead
comparing
adult
responded
flowing
water,
larval
from
each
species
rule
out
possibility
that
any
differences
were
due
learning
as
developed.
found
distribution
along
sides
larvae
differs
two
populations:
more
closer
heads
than
a
river
surface.
However,
neuromast
was
made
up
similar
number
flow-sensitive
hairs
get
tugged
moves
past
them
–
hair
cells
our
inner
ears,
air
pressure
changes
allow
us
perceive
sound.To
determine
whether
also
adapted
dark
environment,
measured
electrical
signals
produced
single
sensory
when
still.
When
not
swimming,
stronger
those
relatives,
indicating
baseline
communication
brain
is
higher.
In
addition,
vibrated
mimic
past,
response
again
fish.The
then
determined
communicated
while
simulated
swimming.
By
recording
neuromasts,
are
relay
fewer
still,
allows
ignore
body
generating
own
movement.
continued
swimming.Next,
tested
sensitivity
swim
dictated
brain.
located
neurons
send
sensors
experimentally
silenced
neurons.
Without
brain,
surface-dwelling
relayed
similarly
cavefish:
be
active
Suppressing
during
swimming
can
lead
efficient
dwellers,
cavefish,
sensitive
likely
beneficial.
And,
populations
cave
systems,
systems
both
adopted
strategy
increase
swimming.Fish
with
sight
eyes,
feel
way
continuing
signal
waterflow
This
extra
attention
requires
energy,
it's
worth
cost
Journal of Experimental Biology,
Journal Year:
2024,
Volume and Issue:
227(4)
Published: Feb. 15, 2024
ABSTRACT
Humans
have
been
trying
to
understand
animal
behavior
at
least
since
recorded
history.
Recent
rapid
development
of
new
technologies
has
allowed
us
make
significant
progress
in
understanding
the
physiological
and
molecular
mechanisms
underlying
behavior,
a
key
goal
neuroethology.
However,
there
is
tradeoff
when
studying
its
biological
mechanisms:
common
protocols
laboratory
are
designed
be
replicable
controlled,
but
they
often
fail
encompass
variability
breadth
natural
behavior.
This
Commentary
proposes
framework
10
questions
that
aim
guide
researchers
incorporating
rich
context
into
their
experimental
design
or
choosing
study
system.
The
cover
overarching
considerations
can
provide
template
for
interspecies
comparisons,
enable
develop
studies
model
organisms
unlock
experiments
our
quest
BMC Ecology and Evolution,
Journal Year:
2024,
Volume and Issue:
24(1)
Published: April 1, 2024
Abstract
Background
Several
studies
suggested
that
cavefish
populations
of
Astyanax
mexicanus
settled
during
the
Late
Pleistocene.
This
implies
cavefish’s
most
conspicuous
phenotypic
changes,
blindness
and
depigmentation,
more
cryptic
characters
important
for
cave
life,
evolved
rapidly.
Results
Using
published
genomes
47
from
la
Cueva
de
El
Pachón,
Sótano
Tinaja,
La
Chica
Molino,
we
searched
putative
loss-of-function
mutations
in
previously
defined
sets
genes,
i.e.
,
vision,
circadian
clock
pigmentation
genes.
Putative
non-functional
alleles
four
vision
genes
were
identified.
Then,
genome-wide
these
populations.
Among
512
with
segregating
are
absent
surface
fish,
found
an
enrichment
visual
perception
populations,
different
levels
shared
found.
a
subset
12
which
found,
extend
analysis
pseudogenes
to
11
six
del
Toro
population,
where
extensive
hybridization
fish
occurs,
correlation
between
level
eye
regression
amount
alleles.
Conclusions
We
confirm
very
few
present
large
set
accordance
recent
origin
cavefish.
Furthermore,
indicates
vision-related
GO-terms,
suggesting
may
be
function
chiefly
impacted
by
gene
losses
related
shift
environment.
The
geographic
distribution
newly
suggests
Sierra
Guatemala
Abra
share
common
origin,
albeit
followed
independent
evolution
long
period.
It
also
supports
Micos
area
have
origin.
In
Toro,
troglomorphic
phenotype
is
maintained
despite
massive
introgression
genome.
Animals
are
adapted
to
their
natural
habitats
and
lifestyles.
Their
brains
perceive
the
external
world
via
sensory
systems,
compute
information
together
with
that
of
internal
states
autonomous
activity,
generate
appropriate
behavioral
outputs.
However,
how
do
these
processes
evolve
across
evolution?
Here,
focusing
on
sense
olfaction,
we
have
studied
evolution
in
olfactory
sensitivity,
preferences,
responses
six
different
food-related
amino
acid
odors
two
eco-morphs
fish
Astyanax
mexicanus
.
To
this
end,
developed
a
high-throughput
setup
pipeline
quantitative
qualitative
behavior
analysis,
tested
489
six-week-old
larvae.
The
blind,
dark-adapted
morphs
species
showed
markedly
distinct
basal
swimming
patterns
odors,
higher
strong
preference
for
alanine,
as
compared
river-dwelling
eyed
conspecifics.
In
addition,
discovered
an
individual
‘swimming
personality’,
personality
influences
capability
respond
efficiently
find
source.
Importantly,
traits
favored
significant
were
surface
cavefish.
Moreover,
displayed
by
second-generation
cave
×
F2
hybrids
suggested
olfactory-driven
sensitivity
is
genetic
trait.
Our
findings
show
processing
has
rapidly
evolved
cavefish
at
several
levels:
detection
threshold,
odor
preference,
foraging
strategy.
Cavefish
therefore
outstanding
model
understand
genetic,
molecular,
neurophysiological
basis
specialization
response
environmental
change.
Ecology and Evolution,
Journal Year:
2024,
Volume and Issue:
14(4)
Published: April 1, 2024
Abstract
Cave‐adapted
animals
evolve
a
suite
of
regressive
and
constructive
traits
that
allow
survival
in
the
dark.
Most
studies
aiming
at
understanding
cave
animal
evolution
have
focused
on
genetics
environmental
underpinnings
traits,
with
special
emphasis
vision
loss.
Possibly
as
result
loss,
other
non‐visual
sensory
systems
expanded
compensated
species.
For
instance,
many
cave‐dwelling
fish
species,
including
blind
cavefish
Mexican
tetra,
Astyanax
mexicanus
,
major
mechanosensory
system
called
lateral
line,
for
loss
through
morphological
expansions.
While
substantial
work
has
shed
light
adaptation
this
system,
there
are
still
open
questions
regarding
its
developmental
origin,
synaptic
plasticity,
overall
adaptive
value.
This
review
provides
snapshot
current
state
knowledge
line
adaption
A.
an
anatomy,
behavior.
Multiple
avenues
future
research
how
these
can
be
leveraged
tools
both
evolutionary
biology
medicine,
discussed.
Proceedings of the Royal Society B Biological Sciences,
Journal Year:
2022,
Volume and Issue:
289(1984)
Published: Oct. 12, 2022
The
genus
Sinocyclocheilus,
comprising
a
large
radiation
of
freshwater
cavefishes,
are
well
known
for
their
presence
regressive
features
(e.g.
variable
eye
reduction).
Fewer
constructive
known,
such
as
the
expansion
lateral
line
system
(LLS),
which
is
involved
in
detecting
water
movements.
precise
relationship
between
LLS
and
cave
adaptation
not
understood.
Here,
we
examine
morphology
LLS-mediated
behaviour
Sinocyclocheilus
species
characterized
by
broad
variation
size,
habitat
geographical
distribution.
Using
live-staining
techniques
automated
behavioural
analyses,
examined
26
quantified
neuromast
organ
number,
density
asymmetry
within
phylogenetic
context.
We
then
how
these
morphological
may
relate
to
wall-following,
an
established
cave-associated
mediated
line.
show
that
most
demonstrated
laterality
(i.e.
asymmetry)
organs
on
head,
often
biased
right.
also
found
wall-following
was
distinctive,
particularly
among
eyeless
species.
Patterns
appear
correlate
with
degree
loss,
This
work
reveals
evolution
convergent
across
distant
cavefish
taxa
mediate
asymmetric
enable
survival
stark
subterranean
microenvironments.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Feb. 2, 2024
Abstract
Astyanax
mexicanus
,
a
species
with
both
surface-dwelling
and
multiple
cave-dwelling
populations,
offers
unique
opportunity
to
study
repeated
adaptation
dark
resource-scarce
environments.
While
previous
work
has
identified
large-scale
changes
in
gene
expression
between
morphs
even
under
identical
laboratory
conditions,
the
regulatory
basis
of
these
differences
remains
largely
unexplored.
In
this
study,
we
focus
on
microRNAs
(miRNAs)
as
key
regulators
understand
cavefish
nuances.
Our
analysis
683
miRNAs,
which
not
only
surpasses
number
documented
related
but
also
provides
first
comprehensive
catalog
miRNAs
for
species.
We
subset
differentially
expressed
common
all
studied
potentially
orchestrating
nuanced
patterns
required
survival
challenging
cave
milieu.
Gene
Ontology
predicted
miRNA
targets
revealed
involvement
developmental
metabolic
pathways
that
are
pivotal
thriving
nutrient-limited
environments,
such
regulation
neuromast
migration.
Moreover,
our
evidence
influence
circadian
rhythm
oxidative
stress
response,
essential
adaptations
lifestyle.
The
generated
will
guide
future
investigations
into
intricate
world
miRNA-mediated
evolution
complex
traits.
Ecology and Evolution,
Journal Year:
2024,
Volume and Issue:
14(6)
Published: June 1, 2024
Abstract
With
75
known
species,
the
freshwater
fish
genus
Sinocyclocheilus
is
largest
cavefish
radiation
in
world
and
shows
multiple
adaptations
for
cave‐dwelling
(stygomorphic
adaptations),
which
include
a
range
of
traits
such
as
eye
degeneration
(normal‐eyed,
micro‐eyed
eyeless),
depigmentation
skin,
some
presence
“horns”.
Their
behavioural
to
subterranean
environments,
however,
are
poorly
understood.
Wall‐following
(WF)
behaviour,
where
an
organism
remains
close
contact
with
boundary
demarcating
its
habitat
when
dark,
peculiar
behaviour
observed
wide
animals
enhanced
cave
dwellers.
Hence,
we
hypothesise
that
wall‐following
also
present
,
possibly
eyeless
species
compared
bearing
(normal‐/micro‐eyed
species).
Using
13
representative
morphs,
designed
series
assays,
based
on
pre‐existing
methods
Astyanax
mexicanus
experiments,
examine
under
three
conditions.
Our
results
indicate
exhibit
significantly
intensities
WF
normal‐eyed
forms
demonstrating
intermediate
distance.
mtDNA
dated
phylogeny
(chronogram
four
clades
A–D),
traced
degree
these
outline
common
patterns.
We
show
intensity
higher
dominated
by
free‐living
species.
found
highly
sensitive
vibrations,
whereas
least
sensitive.
Since
presented
all
given
fishes
evolved
late
Miocene,
identify
this
being
ancestral
enhancement
related
occupation.
Results
from
diversification‐scale
study
suggest
may
be
convergent
trait
across
stygomorphic
lineages.