The ISME Journal,
Год журнала:
2023,
Номер
17(11), С. 1895 - 1906
Опубликована: Авг. 31, 2023
Abstract
The
Clostridia
is
a
dominant
bacterial
class
in
the
guts
of
various
animals
and
are
considered
to
nutritionally
contribute
animal
host.
Here,
we
discovered
clostridial
endosymbionts
cellulolytic
protists
termite
guts,
which
have
never
been
reported
with
evidence.
We
obtained
(near-)complete
genome
sequences
three
endosymbiotic
Clostridia,
each
associated
different
parabasalid
protist
species
infection
rates:
Trichonympha
agilis,
Pseudotrichonympha
grassii,
Devescovina
sp.
All
these
previously
known
harbor
permanently-associated,
mutualistic
Endomicrobia
or
Bacteroidales
that
supplement
nitrogenous
compounds.
genomes
were
small
size
(1.0–1.3
Mbp)
exhibited
signatures
an
obligately-intracellular
parasite,
such
as
extremely
limited
capability
synthesize
amino
acids,
cofactors,
nucleotides
disrupted
glycolytic
pathway
no
net
ATP-generating
system.
Instead,
encoded
ATP/ADP
translocase
and,
interestingly,
regulatory
proteins
unique
eukaryotes
general
possibly
used
interfere
host
cellular
processes.
These
formed
clade
metagenome-assembled
(MAGs)
derived
from
other
animals,
including
human
ruminants,
MAGs
shared
characteristics
parasites.
Gene
flux
analysis
suggested
acquisition
gene
common
ancestor
was
probably
key
emergence
this
parasitic
clade.
Taken
together,
provide
novel
insights
into
multilayered
symbiotic
system
gut
by
adding
presence
parasitism
present
example
putative
energy
parasites
Molecules,
Год журнала:
2022,
Номер
27(23), С. 8273 - 8273
Опубликована: Ноя. 27, 2022
Tannins
are
polyphenols
characterized
by
different
molecular
weights
that
plants
able
to
synthetize
during
their
secondary
metabolism.
Macromolecules
(proteins,
structural
carbohydrates
and
starch)
can
link
tannins
digestion
decrease.
be
classified
into
two
groups:
hydrolysable
condensed
tannins.
polyphenols,
which
directly
or
indirectly
affect
intake
digestion.
Their
ability
bind
molecules
form
complexes
depends
on
the
structure
of
macromolecule
involved.
have
long
been
known
an
"anti-nutritional
agent"
in
monogastric
poultry
animals.
Using
good
tannins'
proper
application
protocols
helped
researchers
observe
positive
effects
intestinal
microbial
ecosystem,
gut
health,
animal
production.
Plant
used
as
alternative
in-feed
antibiotics,
many
factors
described
contribute
variability
efficiencies.
The
objective
this
study
was
review
literature
about
tannins,
use
ruminant
nutrition.
Abstract
Background
The
increased
growth
rate
of
young
animals
can
lead
to
higher
lactation
performance
in
adult
goats;
however,
the
effects
ruminal
microbiome
on
goats,
and
contribution
early-life
rumen
lifelong
goats
has
not
yet
been
well
defined.
Hence,
this
study
assessed
with
different
average
daily
gains
(ADG)
evaluated
its
during
first
period.
Results
Based
monitoring
a
cohort
99
from
youth
lactation,
15
highest
ADG
(HADG)
lowest
(LADG)
were
subjected
fluid
metabolome
profiling.
comparison
metagenome
HADG
LADG
revealed
that
carbohydrate
metabolism
amino
acid
function
enhanced
suggesting
feed
fermentation
ability.
Co-occurrence
network
correlation
analysis
Streptococcus
,
Candidatus
Saccharimonans
Succinivibrionaceae
UCG-001
significantly
positively
correlated
goats’
rates
some
HADG-enriched
protein
metabolites,
such
as
propionate,
butyrate,
maltoriose,
acids,
while
several
genera
species
Prevotella
Methanogens
exhibited
negative
relationship
LADG-enriched
acetate
methane.
Additionally,
functional
keystone
bacterial
taxa,
same
taxa
goats.
also
enriched
lactating
had
effect
efficiency
Additional
using
random
forest
machine
learning
showed
microbiota
their
metabolites
Prevotellaceae
UCG-003
propionate
ratio
could
be
potential
microbial
markers
potentially
classify
high
or
low
an
accuracy
prediction
>
81.3%.
Similarly,
abundance
predictive
milk
yield
(area
under
curve
91.7%).
Conclusions
This
identified
influence
metabolic
functions
shape
animals.
Keystone
bacteria
composition
early
life
ruminants.
These
findings
suggest
together
ruminants
have
long-term
animal
performance.
fundamental
knowledge
may
allow
us
develop
advanced
methods
manipulate
improve
production
Microorganisms,
Год журнала:
2024,
Номер
12(3), С. 558 - 558
Опубликована: Март 11, 2024
Plant
health
is
necessary
for
food
security,
which
a
key
determinant
of
secure
and
sustainable
production
systems.
Deficiency
soil
nutrients
invasion
plant
pathogens
or
insects
are
the
main
destroyers
world’s
production.
Synthetic
fertilizers
chemical-based
pesticides
frequently
employed
to
combat
problems.
However,
these
have
negative
impacts
on
microbial
ecosystems
ecosystem
functioning.
Rhizosphere
microorganisms
demonstrated
their
potency
improve
manage
encourage
growth,
resulting
in
increased
yield
quality
by
converting
organic
inorganic
substances
around
rhizosphere
zone
into
available
nutrients.
Besides
regulating
nutrient
availability
growth
enhancement,
rhizobacteria
fungi
can
restrict
that
cause
disease
secreting
inhibitory
chemicals
boosting
immunity
pests
pathogens.
Thus,
viewed
as
viable,
alluring
economic
approaches
agriculture
biofertilizers
biopesticides.
This
review
provides
an
overview
role
inducing
defenses.
Moreover,
discussion
presented
surrounding
recent
consequences
employing
strategy
towards
improving
fertilization
effectiveness,
encouraging
stronger,
more
pest-resistant
plants.
The ISME Journal,
Год журнала:
2023,
Номер
17(7), С. 1128 - 1140
Опубликована: Май 11, 2023
Abstract
Protozoa
comprise
a
major
fraction
of
the
microbial
biomass
in
rumen
microbiome,
which
entodiniomorphs
(order:
Entodiniomorphida)
and
holotrichs
Vestibuliferida)
are
consistently
observed
to
be
dominant
across
diverse
genetic
geographical
range
ruminant
hosts.
Despite
apparent
core
role
that
protozoal
species
exert,
their
biological
metabolic
contributions
function
remain
largely
undescribed
vivo.
Here,
we
have
leveraged
(meta)genome-centric
metaproteomes
from
fluid
samples
originating
both
cattle
goats
fed
diets
with
varying
inclusion
levels
lipids
starch,
detail
specific
niches
protozoa
occupy
context
co-habitants.
Initial
proteome
estimations
via
total
protein
counts
label-free
quantification
highlight
entodiniomorph
Entodinium
Epidinium
as
well
Dasytricha
Isotricha
an
extensive
metaproteome.
Proteomic
detection
metabolism
such
hydrogenases
(Dasytricha,
Isotricha,
Epidinium,
Enoploplastron),
carbohydrate-active
enzymes
(Epidinium,
Diplodinium,
Enoploplastron,
Polyplastron),
predation
(Entodinium)
volatile
fatty
acid
production
(Entodinium
Epidinium)
was
at
increased
high
methane-emitting
animals.
certain
having
well-established
reputations
for
digesting
they
were
unexpectedly
less
detectable
low
methane
emitting-animals
starch
diets,
instead
dominated
by
propionate/succinate-producing
bacterial
populations
suspected
being
resistant
irrespective
host.
Finally,
reaffirmed
our
abovementioned
observations
geographically
independent
datasets,
thus
illuminating
substantial
influence
under-explored
eukaryotic
rumen,
greater
implications
digestion
metabolism.
Frontiers in Microbiology,
Год журнала:
2024,
Номер
15
Опубликована: Янв. 29, 2024
Livestock
on
the
Qinghai-Tibetan
Plateau
is
of
great
importance
for
livelihood
local
inhabitants
and
ecosystem
plateau.
The
natural,
harsh
environment
has
shaped
adaptations
livestock
while
providing
them
with
requisite
eco-services.
Over
time,
unique
genes
metabolic
mechanisms
(nitrogen
energy)
have
evolved
which
enabled
yaks
to
adapt
morphologically
physiologically
Plateau.
rumen
microbiota
also
co-evolved
host
contributed
host's
adaptation
environment.
Understanding
complex
linkages
between
microbiota,
host,
essential
optimizing
function
meet
growing
demands
animal
products
minimizing
environmental
impact
ruminant
production.
However,
little
known
about
host-rumen
microbiome-environment
how
they
ultimately
benefit
in
adapting
In
this
review,
we
pieced
together
yak's
by
summarizing
natural
selection
nutritional
features
integrating
key
aspects
its
microbiome
efficiency
homeostasis.
We
found
that
homeostasis
results
higher
feed
digestibility,
microbial
protein
production,
short-chain
fatty
acid
(SCFA)
concentrations,
lower
methane
emissions
when
compared
other
low-altitude
ruminants.
forms
a
multi-synergistic
relationship
among
services,
their
communities,
genes,
enzymes.
proteins
SCFAs
act
as
precursors
directly
milk
composition
or
adipose
accumulation,
improving
meat
quality,
resulting
fat
content
yak
percentage
abundant
acids
dairy
cow
cattle.
hierarchical
interactions
climate,
forage,
microorganisms,
reshaped
animal's
survival
performance.
an
interactive
understanding
was
established.
these
concepts
valuable
agriculture
our
It
contributes
better
ecology
evolution
anaerobic
ecosystems
host-environment
improve
FEMS Microbiology Reviews,
Год журнала:
2024,
Номер
48(2)
Опубликована: Фев. 28, 2024
Abstract
Microbiomes
are
foundational
components
of
the
environment
that
provide
essential
services
relating
to
food
security,
carbon
sequestration,
human
health,
and
overall
well-being
ecosystems.
Microbiota
exert
their
effects
primarily
through
complex
interactions
at
interfaces
with
plant,
animal,
hosts,
as
well
within
soil
environment.
This
review
aims
explore
ecological,
evolutionary,
molecular
processes
governing
establishment
function
microbiome–host
relationships,
specifically
critical
One
Health—a
transdisciplinary
framework
recognizes
health
outcomes
people,
animals,
plants,
tightly
interconnected.
Within
context
Health,
core
principles
underpinning
microbiome
assembly
will
be
discussed
in
detail,
including
biofilm
formation,
microbial
recruitment
strategies,
mechanisms
attachment,
community
succession,
effect
these
have
on
host
health.
Finally,
this
catalogue
recent
advances
microbiology
ecology
methods
can
used
profile
interfaces,
particular
attention
multi-omic,
advanced
imaging,
modelling
approaches.
These
technologies
for
delineating
general
specific
functions,
mapping
interconnectivity
across
varying
spatial
temporal
scales,
predictive
frameworks
guide
development
targeted
microbiome-interventions
deliver
Health
outcomes.
Nature Communications,
Год журнала:
2024,
Номер
15(1)
Опубликована: Март 28, 2024
Abstract
Anaerobic
gut
fungi
(AGF,
Neocallimastigomycota
)
reside
in
the
alimentary
tract
of
herbivores.
While
their
presence
mammals
is
well
documented,
evidence
for
occurrence
non-mammalian
hosts
currently
sparse.
Culture-independent
surveys
AGF
tortoises
identified
a
unique
community,
with
three
novel
deep-branching
genera
representing
>90%
sequences
most
samples.
Representatives
all
were
successfully
isolated
under
strict
anaerobic
conditions.
Transcriptomics-enabled
phylogenomic
and
molecular
dating
analyses
indicated
an
ancient,
position
tree
these
genera,
evolutionary
divergence
time
estimate
104-112
million
years
ago
(Mya).
Such
estimates
push
establishment
animal-
symbiosis
from
late
to
early
Cretaceous.
Further,
tortoise-associated
isolates
(T-AGF)
exhibited
limited
capacity
plant
polysaccharides
metabolism
lacked
genes
encoding
several
carbohydrate-active
enzyme
(CAZyme)
families.
Finally,
we
demonstrate
that
observed
curtailed
degradation
capacities
reduced
CAZyme
repertoire
driven
by
paucity
horizontal
gene
transfer
(HGT)
T-AGF
genomes,
compared
mammalian
counterparts.
This
was
reflected
altered
cellulosomal
production
T-AGF.
Our
findings
provide
insights
into
phylogenetic
diversity,
ecological
distribution,
history,
evolution
fungal-host
nutritional
symbiosis,
dynamics
acquisition
.