Cell Reports,
Год журнала:
2020,
Номер
30(1), С. 284 - 297.e5
Опубликована: Янв. 1, 2020
Neurotransmitters
often
have
multiple
receptors
that
induce
distinct
responses
in
receiving
cells.
Expression
and
localization
of
neurotransmitter
individual
neurons
are
therefore
critical
for
understanding
the
operation
neural
circuits.
Here
we
describe
a
comprehensive
library
reporter
strains
which
convertible
T2A-GAL4
cassette
is
inserted
into
endogenous
receptor
genes
Drosophila.
Using
this
library,
profile
expression
75
brain.
Cluster
analysis
reveals
neurochemical
segmentation
brain,
distinguishing
higher
brain
centers
from
rest.
By
recombinase-mediated
exchange,
convert
split-GFP
Tango
to
visualize
subcellular
activation
dopamine
specific
cell
types.
This
striking
differences
their
localization,
may
underlie
cellular
different
behavioral
contexts.
Our
resources
thus
provide
versatile
toolkit
dissecting
organization
function
systems
fly
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Июнь 27, 2023
Abstract
The
fruit
fly
Drosophila
melanogaster
combines
surprisingly
sophisticated
behaviour
with
a
highly
tractable
nervous
system.
A
large
part
of
the
fly’s
success
as
model
organism
in
modern
neuroscience
stems
from
concentration
collaboratively
generated
molecular
genetic
and
digital
resources.
As
presented
our
FlyWire
companion
paper
1
,
this
now
includes
first
full
brain
connectome
an
adult
animal.
Here
we
report
systematic
hierarchical
annotation
∼130,000-neuron
including
neuronal
classes,
cell
types
developmental
units
(hemilineages).
This
enables
any
researcher
to
navigate
huge
dataset
find
systems
neurons
interest,
linked
literature
through
Virtual
Fly
Brain
database
2
.
Crucially,
resource
4,552
types.
3,094
are
rigorous
consensus
validations
previously
proposed
“hemibrain”
3
In
addition,
propose
1,458
new
types,
arising
mostly
fact
that
spans
whole
brain,
whereas
hemibrain
derives
subvolume.
Comparison
showed
type
counts
strong
connections
were
largely
stable,
but
connection
weights
variable
within
across
animals.
Further
analysis
defined
simple
heuristics
for
interpretation:
stronger
than
10
unitary
synapses
or
providing
>1%
input
target
conserved.
Some
increased
variability
connectomes:
most
common
mushroom
body,
required
learning
memory,
is
almost
twice
numerous
hemibrain.
We
evidence
functional
homeostasis
adjustments
absolute
amount
excitatory
while
maintaining
excitation-inhibition
ratio.
Finally,
surprisingly,
about
one
third
could
not
yet
be
reliably
identified
connectome.
therefore
suggest
should
robust
inter-individual
variation,
namely
groups
cells
quantitatively
more
similar
different
other
same
brain.
Joint
connectomes
demonstrates
viability
utility
definition.
Our
work
defines
atlas
provides
both
intellectual
framework
open
source
toolchain
brain-scale
comparative
connectomics.
Nature Neuroscience,
Год журнала:
2023,
Номер
26(4), С. 682 - 695
Опубликована: Март 23, 2023
Knowing
one's
own
behavioral
state
has
long
been
theorized
as
critical
for
contextualizing
dynamic
sensory
cues
and
identifying
appropriate
future
behaviors.
Ascending
neurons
(ANs)
in
the
motor
system
that
project
to
brain
are
well
positioned
provide
such
signals.
However,
what
ANs
encode
where
they
convey
these
signals
remains
largely
unknown.
Here,
through
large-scale
functional
imaging
behaving
animals
morphological
quantification,
we
report
encoding
targeting
of
hundreds
genetically
identifiable
adult
fly,
Drosophila
melanogaster.
We
reveal
states,
specifically
conveying
self-motion
anterior
ventrolateral
protocerebrum,
an
integrative
hub,
discrete
actions
gnathal
ganglia,
a
locus
action
selection.
Additionally,
AN
projection
patterns
within
predictive
their
encoding.
Thus,
ascending
populations
poised
inform
distinct
hubs
ongoing
behaviors
may
important
substrate
computations
required
adaptive
behavior.
BMC Bioinformatics,
Год журнала:
2024,
Номер
25(1)
Опубликована: Март 15, 2024
Abstract
Background
Neuroscience
research
in
Drosophila
is
benefiting
from
large-scale
connectomics
efforts
using
electron
microscopy
(EM)
to
reveal
all
the
neurons
a
brain
and
their
connections.
To
exploit
this
knowledge
base,
researchers
relate
connectome’s
structure
neuronal
function,
often
by
studying
individual
neuron
cell
types.
Vast
libraries
of
fly
driver
lines
expressing
fluorescent
reporter
genes
sets
have
been
created
imaged
confocal
light
(LM),
enabling
targeting
for
experimentation.
However,
creating
line
driving
gene
expression
within
single
found
an
EM
connectome
remains
challenge,
as
it
typically
requires
identifying
pair
where
only
interest
expressed
both.
This
task
other
emerging
scientific
workflows
require
finding
similar
across
large
data
different
modalities.
Results
Here,
we
present
NeuronBridge,
web
application
easily
rapidly
putative
morphological
matches
between
We
describe
functionality
construction
NeuronBridge
service,
including
its
user-friendly
graphical
user
interface
(GUI),
extensible
model,
serverless
cloud
architecture,
massively
parallel
image
search
engine.
Conclusions
fills
critical
gap
workflow
used
hundreds
neuroscience
around
world.
offer
our
software
code,
open
APIs,
processed
integration
reuse,
provide
service
at
http://neuronbridge.janelia.org
.
In
most
animals,
a
relatively
small
number
of
descending
neurons
(DNs)
connect
higher
brain
centers
in
the
animal’s
head
to
circuits
and
motor
(MNs)
nerve
cord
body
that
effect
movement
limbs.
To
understand
how
signals
generate
behavior,
it
is
critical
these
pathways
are
organized
onto
MNs.
fly,
Drosophila
melanogaster
,
MNs
controlling
muscles
leg,
wing,
other
systems
reside
ventral
(VNC),
analogous
mammalian
spinal
cord.
companion
papers,
we
introduced
densely-reconstructed
connectome
Male
Adult
Nerve
Cord
(MANC,
Takemura
et
al.,
2023),
including
cell
type
developmental
lineage
annotation
(Marin
which
provides
complete
VNC
connectivity
at
synaptic
resolution.
Here,
present
first
look
organization
networks
connecting
DNs
based
on
this
new
information.
We
proofread
curated
all
ensure
accuracy
reliability,
then
systematically
matched
DN
axon
terminals
MN
dendrites
with
light
microscopy
data
link
their
morphology
inputs
or
muscle
targets.
report
both
broad
organizational
patterns
entire
network
fine-scale
analysis
selected
interest.
discover
direct
DN-MN
connections
infrequent
identify
communities
intrinsic
linked
control
different
systems,
putative
for
walking,
dorsal
flight
steering
power
generation,
intermediate
lower
tectulum
coordinated
action
wings
legs.
Our
generates
hypotheses
future
functional
experiments
and,
together
MANC
connectome,
empowers
others
investigate
richer
mechanistic
detail.
Current Biology,
Год журнала:
2024,
Номер
34(4), С. 808 - 824.e6
Опубликована: Янв. 30, 2024
Many
motor
control
systems
generate
multiple
movements
using
a
common
set
of
muscles.
How
are
premotor
circuits
able
to
flexibly
diverse
movement
patterns?
Here,
we
characterize
the
neuronal
that
drive
distinct
courtship
songs
Drosophila
melanogaster.
Male
flies
vibrate
their
wings
toward
females
produce
two
different
song
modes—pulse
and
sine
song—which
signal
species
identity
male
quality.
Using
cell-type-specific
genetic
reagents
connectome,
provide
cellular
synaptic
map
in
ventral
nerve
cord
these
examine
how
activating
or
inhibiting
each
cell
type
within
affects
song.
Our
data
reveal
circuit
is
organized
into
nested
feedforward
pathways
with
extensive
reciprocal
feedback
connections.
The
larger
network
produces
pulse
song,
more
complex
ancestral
form.
A
subset
this
simpler
recent
Such
organization
may
be
feature
which
evolution
has
layered
increasing
flexibility
onto
basic
pattern.