Chronic industrial perturbation and seasonal change induces shift in the bacterial community from gammaproteobacteria to betaproteobacteria having catabolic potential for aromatic compounds at Amlakhadi canal DOI

Jenny Johnson,

Kunal Jain,

Anand Patel

et al.

World Journal of Microbiology and Biotechnology, Journal Year: 2023, Volume and Issue: 40(2)

Published: Dec. 26, 2023

Language: Английский

Spatial distribution characteristics and degradation mechanism of microorganisms in n-hexadecane contaminated vadose zone DOI
Kexue Han, Rui Zuo,

Xiaoyuan Cao

et al.

The Science of The Total Environment, Journal Year: 2024, Volume and Issue: 924, P. 171462 - 171462

Published: March 5, 2024

Language: Английский

Citations

8

A multi-omics approach to unravelling the coupling mechanism of nitrogen metabolism and phenanthrene biodegradation in soil amended with biochar DOI Creative Commons
Biya Dong, Jinfeng Lu, Yuexian Liu

et al.

Environment International, Journal Year: 2024, Volume and Issue: 183, P. 108435 - 108435

Published: Jan. 1, 2024

The presence of polycyclic aromatic hydrocarbons (PAHs) in soil negatively affects the environment and degradation these contaminants is influenced by nitrogen metabolism. However, mechanisms underlying interrelationships between functional genes involved metabolism phenanthrene (PHE) biodegradation, as well effects biochar on mechanisms, require further study. Therefore, this study utilised metabolomic metagenomic analysis to investigate primary processes, associated enzymes genes, differential metabolites PHE-contaminated with without amendment over a 45-day incubation period. Results showed that dissimilatory nitrate reduction ammonium (DNRA) denitrification were dominant processes soil. addition enhanced modules, exhibiting discernible temporal fluctuations DNRA proportions. Co-occurrence networks correlation heatmap revealed potential interactions among responsible for PHE biodegradation Notably, displayed significant positive downstream degradation. Of particular interest was stronger observed biochar. inhibited 9-phenanthrol pathway, resulting elevated levels glutathione (GSH) response environmental stress. These findings provide new insights into highlight dual processes.

Language: Английский

Citations

7

A metagenome-derived artificial intelligence modeling framework advances the predictive diagnosis and interpretation of petroleum-polluted groundwater DOI
Jonathan Wijaya, Joonhong Park, Yuyi Yang

et al.

Journal of Hazardous Materials, Journal Year: 2024, Volume and Issue: 472, P. 134513 - 134513

Published: May 3, 2024

Language: Английский

Citations

7

Strategies for remediation of polycyclic aromatic hydrocarbons in contaminated soil: A systematic review and bibliometric analysis DOI
Nitu Gupta, Sandipan Banerjee, Apurba Koley

et al.

Applied Soil Ecology, Journal Year: 2024, Volume and Issue: 204, P. 105688 - 105688

Published: Oct. 16, 2024

Language: Английский

Citations

5

Microbiological methodologies: Comparative evaluation of microbial community and enhanced antibiotic susceptibility testing DOI Creative Commons
Sinethemba Yakobi, Uchechukwu U. Nwodo

Electronic Journal of Biotechnology, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 1, 2025

Language: Английский

Citations

0

Genomics and metabolic responses reveal the effect of Candida tropicalis ZD-3 on the degradation of Gossypol DOI Creative Commons

Li Zhang,

Xiaolong Yang, Rongzheng Huang

et al.

Ecotoxicology and Environmental Safety, Journal Year: 2025, Volume and Issue: 292, P. 117974 - 117974

Published: March 1, 2025

Cottonseed meal is widely used as an alternative source of protein in the animal feed industry. However, presence toxic gossypol limits its use livestock production. In order to reduce toxicity, microbial degradation generally considered be environmentally friendly and cost-effective strategy. Candida tropicalis ZD-3 has demonstrated ability degrade gossypol. Nevertheless, genome gossypol-induced C. not been fully sequenced, comprehensive metabolic profile remains unexplored. this study, rate by reached 88.5 %, determined high performance liquid chromatography (HPLC). The characteristic peaks amides were changed after treatment Fourier transform infrared spectroscopy (FTIR) analysis. Genomic correlation results showed that gene function annotation revealed 64 protein-coding genes potentially involved catabolism, primarily encoding aldehyde dehydrogenase, reductase, glutathione peroxidase. Metabolomic analysis indicated activated ABC transporters amino acid synthesis pathways, such histidine, lysine, arginine biosynthesis. These pathways provided substantial energy for cells cope with external stress, promoted tricarboxylic (TCA) cycle, formed a complex regulatory network tolerance degradation. This study marks first revelation metabolism tropicalis, laying foundation further research on detoxification.

Language: Английский

Citations

0

Rhizodegradation of diesel and PAH contaminated soils with Miscanthus × giganteus: Soil, plants, microbes and pollutants interactions after two seasons DOI
Hana Burdová, Diana Nebeská, Kristýna Marková

et al.

Journal of Environmental Management, Journal Year: 2025, Volume and Issue: 381, P. 125208 - 125208

Published: April 9, 2025

Language: Английский

Citations

0

Abundance Correlations of Carbon Fixation and Pollutant Degradation Functions in Oil-Contaminated Soils: Insights Derived from Integrated Metagenomic and Quantitative PCR Analyses DOI
Jiayu Song, Yakui Chen, Yilei Han

et al.

Journal of environmental chemical engineering, Journal Year: 2025, Volume and Issue: unknown, P. 116630 - 116630

Published: April 1, 2025

Language: Английский

Citations

0

Bio-prospective of Acidophile Microorganisms in Biodegradation of NSAIDs DOI
Anisa Ratnasari,

Isti Faizati Zainiyah,

Samrendra Singh Thakur

et al.

Current Pollution Reports, Journal Year: 2024, Volume and Issue: 10(2), P. 189 - 206

Published: March 25, 2024

Language: Английский

Citations

3

Microbial functional heterogeneity induced in a petroleum-polluted soil profile DOI
Ruihuan Zhang,

Jugui Zhuang,

Xue Guo

et al.

Journal of Hazardous Materials, Journal Year: 2023, Volume and Issue: 465, P. 133391 - 133391

Published: Dec. 29, 2023

Language: Английский

Citations

5