bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: March 6, 2024
By
largely
unknown
mechanism(s),
SARS-CoV-2
hijacks
the
host
translation
apparatus
to
promote
COVID-19
pathogenesis.
We
report
that
histone
methyltransferase
G9a
noncanonically
regulates
viral
hijacking
of
machinery
bring
about
symptoms
hyperinflammation,
lymphopenia,
and
blood
coagulation.
Chemoproteomic
analysis
patient
peripheral
mononuclear
cells
(PBMC)
identified
enhanced
interactions
between
SARS-CoV-2-upregulated
distinct
regulators,
particularly
N
Abstract
Long
coronavirus
disease
(COVID)
is
defined
as
the
continuation
or
development
of
new
symptoms
three
months
after
severe
acute
respiratory
syndrome
2
(SARS-CoV-2)
infection,
and
that
last
for
at
least
two
months,
with
no
other
explanation
their
cause.
This
includes
various
clinical
manifestations
affect
multiple
organ
systems,
such
complications
in
respiratory,
cardiovascular,
neurological,
musculoskeletal
systems.
The
most
commonly
reported
include
fatigue,
cognitive
dysfunction,
dyspnea,
chest
pain;
however,
prevalence
severity
these
vary
greatly
among
individuals.
underlying
mechanisms
long
COVID
are
complex
multifaceted,
encompassing
viral
persistence,
immune
system
mitochondrial
abnormalities,
endothelial
impairment,
alterations
microbiome.
Further,
has
imposed
a
significant
burden
on
individuals,
healthcare
economy
by
impairing
an
individual’s
quality
life
functional
capacity,
thereby
increasing
costs
demand
care
rehabilitation
services.
review
summarizes
definition,
phenotypes,
mechanisms,
current
treatment
advancements
highlights
specific
research
directions
future
investigation.
BMC Medicine,
Journal Year:
2025,
Volume and Issue:
23(1)
Published: March 5, 2025
Approximately
10-30%
of
individuals
continue
to
experience
symptoms
classified
as
post-acute
sequelae
coronavirus
disease
2019
(COVID-19
(PASC)).
PASC
is
a
multisystem
condition
primarily
characterized
by
respiratory
symptoms,
such
reduced
diffusing
capacity
for
carbon
monoxide
(DLco).
Although
many
studies
have
investigated
the
pathogenesis
acute
COVID-19,
long-term
molecular
changes
in
COVID-19
convalescents
with
remain
poorly
understood.
We
prospectively
recruited
70
who
had
been
diagnosed
from
7
January
2020
29
May
(i.e.,
convalescents);
we
performed
follow-up
visits
at
6
months,
1
year,
2
years,
and
3
years
after
hospital
discharge.
Thirty-five
healthy
controls
(CONs),
physical
examination
center
before
pandemic,
served
comparison
group.
explored
proteomic
metabolomic
profiles
174
plasma
samples
35
CONs.
comprehensive
analysis
investigate
host
up
Our
multi-omics
revealed
activation
cytoskeletal
organization
glycolysis/gluconeogenesis,
well
suppression
gas
transport
adaptive
immune
responses,
convalescents.
Additionally,
metabolites
involved
glutathione
metabolism;
alanine,
aspartate,
glutamate
ascorbate
aldarate
metabolism
were
significantly
upregulated
Pulmonary
abnormalities
persisted
convalescents;
impaired
(DLco)
was
most
prominent
feature.
used
this
profile
develop
model
involving
one
protein
(heterogeneous
nuclear
ribonucleoprotein
K
(HNRNPK))
two
(arachidonoyl-EA
1-O-(2r-hydroxy-pentadecyl)-sn-glycerol))
identification
abnormal
DLco.
These
data
provide
insights
concerning
among
discharge,
clarify
mechanisms
driving
sequelae,
support
development
novel
predict
This
longitudinal
may
illuminate
trajectory
altered
lung
function
Journal of Medical Virology,
Journal Year:
2025,
Volume and Issue:
97(4)
Published: April 1, 2025
ABSTRACT
After
the
coronavirus
disease
2019
(COVID‐19)
pandemic,
postacute
effects
of
severe
acute
respiratory
syndrome
2
(SARS‐CoV‐2)
infection
have
gradually
attracted
attention.
To
precisely
evaluate
health
status
convalescent
patients
with
COVID‐19,
we
analyzed
symptom
and
proteome
data
442
plasma
samples
from
healthy
controls,
hospitalized
patients,
6
or
12
months
after
SARS‐CoV‐2
infection.
Symptoms
analysis
revealed
distinct
relationships
in
patients.
Results
protein
expression
levels
showed
that
C1QA,
C1QB,
C2,
CFH,
CFHR1,
F10,
which
regulate
complement
system
coagulation,
remained
highly
expressed
even
at
12‐month
follow‐up
compared
their
individuals.
By
combining
data,
were
categorized
into
three
subtypes:
S1
(metabolism‐healthy),
S2
(COVID‐19
retention),
S3
(long
COVID).
We
speculated
reporting
hair
loss
could
a
better
than
those
experiencing
headaches
dyspnea.
Compared
to
other
sleep
disorders,
appetite
decrease,
muscle
weakness
may
need
more
attention
because
they
classified
subtype,
had
most
COVID‐19.
Subtyping
COVID‐19
enable
personalized
treatments
tailored
individual
needs.
This
study
provides
valuable
proteomic
datasets
for
further
studies
associated
long
COVID.
Science Translational Medicine,
Journal Year:
2025,
Volume and Issue:
17(795)
Published: April 23, 2025
Persistent
symptoms
after
an
acute
infection
is
emerging
public
health
concern,
but
the
pathobiology
of
such
conditions
not
well
understood.
One
possible
scenario
involves
persistence
lingering
antigen.
We
have
previously
reported
that
patients
with
postinfectious
Lyme
arthritis
often
harbor
peptidoglycan
(PG)
cell
wall
Borrelia
burgdorferi
,
disease
agent,
in
synovial
fluid
their
inflamed
joints
treatment.
However,
it
yet
known
how
B.
PG
persists,
what
form,
or
if
may
play
a
role
other
complications
disease.
Using
murine
model,
we
developed
real-time
vivo
system
to
track
as
function
chemistry
and
validated
our
findings
using
both
molecular
cellular
approaches.
Unlike
typical
bacterial
PG,
unique
chemical
properties
polymeric
drive
liver
accumulation,
where
material
persists
for
weeks.
Kupffer
cells
hepatocytes
phagocytose
retain
and,
although
occupancy
coincides
minimal
pathology,
organ-specific
secreted
protein
profiles
produced
under
these
bear
some
similarities
proteins
enriched
chronic
illness
infection.
Moreover,
transcriptomic
profiling
indicated
affects
energy
metabolism
peripheral
blood
mononuclear
cells.
Our
provide
mechanistic
insights
into
pathogenic
molecule
can
persist
agent
clearance,
potentially
contributing
Proteomes,
Journal Year:
2024,
Volume and Issue:
12(1), P. 9 - 9
Published: March 21, 2024
Background:
Very
little
is
known
about
the
proteome
of
human
olfactory
system
and
how
diseases
associated
with
dysfunctions
can
affect
it.
With
this
review,
we
try
to
summarize
existing
literature
on
use
technique
for
a
better
understanding
neurodegenerative
disease
process.
Methods:
We
used
PubMed
database
found
different
articles
which
were
then
selected
independently
by
three
authors.
Results:
157
articles,
which,
after
careful
selection,
only
30
analyzed
in
review.
presented
all
associations
identified
between
protein/pathway
alterations
SARS-CoV-2
infection.
Conclusions:
think
that
through
blood,
saliva,
mucus
analysis
could
be
new
way
understand,
diagnose,
finally
treat
diseases.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: May 5, 2024
More
than
65
million
individuals
worldwide
are
estimated
to
have
Long
COVID
(LC),
a
complex
multisystemic
condition,
wherein
patients
of
all
ages
report
fatigue,
post-exertional
malaise,
and
other
symptoms
resembling
myalgic
encephalomyelitis
/
chronic
fatigue
syndrome
(ME/CFS).
With
no
current
treatments
or
reliable
diagnostic
markers,
there
is
an
urgent
need
define
the
molecular
underpinnings
these
conditions.
By
studying
bioenergetic
characteristics
peripheral
blood
lymphocytes
in
over
16
healthy
controls,
15
ME/CFS,
LC,
we
find
both
ME/CFS
LC
donors
exhibit
signs
elevated
oxidative
stress,
relative
especially
memory
subset.
Using
combination
flow
cytometry,
bulk
RNA-seq
analysis,
mass
spectrometry,
systems
chemistry
also
observed
aberrations
ROS
clearance
pathways
including
glutathione
levels,
decreases
mitochondrial
superoxide
dismutase
peroxidase
4
mediated
lipid
damage.
Critically,
changes
redox
show
striking
sex-specific
trends.
While
females
diagnosed
with
higher
total
calcium
males
diagnosis
normal
but
larger
Further
analyses
that
levels
correlates
hyperproliferation
T
cells
females,
consistent
known
role
initiation
proliferation.
This
can
be
attenuated
by
metformin,
suggesting
this
FDA-approved
drug
as
possible
treatment,
suggested
recent
clinical
study
patients.
Thus,
mechanistically
related
could
quantitative
cell
measurements.
We
suggest
effective,
patient
tailored
drugs
might
discovered
using
standard
lymphocyte
stimulation
assays.
Virus Research,
Journal Year:
2024,
Volume and Issue:
344, P. 199363 - 199363
Published: March 22, 2024
To
investigate
whether
specific
immune
response
plasma
proteins
can
predict
an
elevated
risk
of
developing
Long
COVID
symptoms
or
fatigue
severity
after
SARS-CoV-2
infection.
BMC Pediatrics,
Journal Year:
2024,
Volume and Issue:
24(1)
Published: April 2, 2024
Abstract
Background
The
rebound
of
influenza
A
(H1N1)
infection
in
post-COVID-19
era
recently
attracted
enormous
attention
due
the
rapidly
increased
number
pediatric
hospitalizations
and
changed
characteristics
compared
to
classical
H1N1
pre-COVID-19
era.
This
study
aimed
evaluate
clinical
severity
children
hospitalized
with
during
period,
construct
a
novel
prediction
model
for
severe
infection.
Methods
total
757
inpatients
from
nine
tertiary
public
hospitals
Yunnan
Shanghai,
China,
were
retrospectively
included,
which
431
patients
diagnosed
between
February
2023
July
divided
into
group,
while
remaining
326
November
2018
April
2019
group.
1:1
propensity-score
matching
(PSM)
was
adopted
balance
demographic
differences
pre-
groups,
then
across
these
two
groups
based
on
laboratory
indicators.
Additionally,
subgroup
analysis
original
group
(without
PSM)
performed
investigate
independent
risk
factors
post-COIVD-19
Specifically,
Least
Absolute
Shrinkage
Selection
Operator
(LASSO)
regression
applied
select
candidate
predictors,
logistic
used
further
identify
factors,
thus
establishing
model.
Receiver
operating
characteristic
(ROC)
curve
calibration
utilized
assess
discriminative
capability
accuracy
model,
decision
(DCA)
determine
usefulness
Results
After
PSM,
showed
longer
fever
duration,
higher
peak,
more
frequent
cough
seizures,
as
well
levels
C-reactive
protein
(CRP),
interleukin
6
(IL-6),
IL-10,
creatine
kinase-MB
(CK-MB)
fibrinogen,
mechanical
ventilation
rate,
length
hospital
stay
(LOS),
proportion
(all
P
<
0.05),
Moreover,
age,
BMI,
leucocyte
count,
lymphocyte
proportion,
CD3
+
T
cells,
tumor
necrosis
factor
α
(TNF-α),
IL-10
confirmed
be
independently
associated
integrating
above
eight
variables
established,
this
had
good
discrimination,
accuracy,
practicability.
Conclusions
Pediatric
overall
disease
than
period.
Meanwhile,
seizures
prominent
Clinicians
should
aware
changes
such
work.
Furthermore,
simple
practical
constructed
internally
validated
here,
performance
predicting
Graphical
EBioMedicine,
Journal Year:
2024,
Volume and Issue:
101, P. 105023 - 105023
Published: Feb. 19, 2024
Long
COVID,
characterized
by
persistent
symptoms,
lacks
clear
diagnostic
and
treatment
approaches
due
to
uncertain
underlying
mechanisms.
Gu
colleagues
delve
into
the
proteomic
landscape
of
COVID-19
survivors
over
two
years,
offering
insights
recovery
dynamics
potential
biomarkers.1Gu
X.
Wang
S.
Zhang
W.
et
al.Probing
long
COVID
through
a
lens:
comprehensive
two-year
longitudinal
cohort
study
hospitalised
survivors.eBioMedicine.
2023;
98104851Summary
Full
Text
PDF
Scopus
(4)
Google
Scholar
However,
certain
aspects
require
consideration
for
more
understanding.
The
impact
vaccination
on
is
overlooked,
hindering
interplay
between
recovery.
With
up
81.2%
vaccinated
during
study,1Gu
influence
differentially
expressed
proteins
remains
unexplored,
despite
evidence
supporting
post-infection
in
reducing
risk.2Ayoubkhani
D.
Bermingham
C.
Pouwels
K.B.
al.Trajectory
covid
symptoms
after
covid-19
vaccination:
community
based
study.BMJ.
2022;
377e069676PubMed
Data
completeness
concerns
arise
as
questionnaire
details,
including
education,
alcohol
consumption,
personal
medical
history,
family
are
mentioned
but
not
reported.1Gu
Integrating
data
with
laboratory
findings
would
enhance
understanding
factors
influencing
post-COVID
changes.
Key
associated
post-COVID-19
identified
complement
coagulation
pathways,
emphasizing
cardiovascular
risks.1Gu
Existing
studies
underline
disease's
association
COVID,3Wahlgren
Forsberg
G.
Divanoglou
A.
al.Two-year
follow-up
patients
condition
Sweden:
prospective
study.Lancet
Reg
Health
Eur.
28100595PubMed
Scholar,
4Wan
E.Y.F.
Mathur
R.
al.Association
short-
long-term
risk
disease
mortality:
UK
Biobank.Cardiovasc
Res.
119:
1718-1727Crossref
PubMed
(35)
5Xie
Y.
Xu
E.
Bowe
B.
Al-Aly
Z.
Long-term
outcomes
COVID-19.Nat
Med.
28:
583-590Crossref
(873)
critical
gap
lies
absence
cardiac
function
assessments
re-admission
related
protein
Additional
details
needed
proper
contextualization
analysis.
In
principal
components
analysis
(Figure
1B–D),
projection
encompassing
all
timepoints
controls
facilitate
interpretation.
distinct
clusters
observed
healthy
at
24
months
lack
meaningful
discussion.
machine
learning
model's
presentation
classifying
stages
problematic
training
use,
especially
fewer
observations
than
features.
clarity
leave-one-out
cross-validation
issues
repeated
genomic
profiling
warrant
careful
conclusion,
while
al.'s
provides
valuable
changes
biomarkers
addressing
gaps
influence,
completeness,
assessment,
methodological
its
clinical
relevance
contribute
thorough
post-SARS-CoV-2
infection
dynamics.
CY
SJT
conceived
manuscript.
conducted
search
drafted
CY,
CPS
revised
manuscript
accepted
final
version
publication.
reported
grant
from
Canadian
Institutes
Research
(grant
number:
177747).
No
other
conflicts
were
reported.
Authors'
reply
Letter
regarding
"Probing
Proteomic
Lens:
Comprehensive
Two-Year
Longitudinal
Cohort
Study
Hospitalised
Survivor"In
letter
our
Survivors",
reader
pointed
out
(DEPs)
COVID.
To
address
this
concern,
we
have
analysed
correlation
249
DEPs.
After
adjustment
age,
sex,
smoking
status,
body
mass
index,
comorbidity,
severity
acute
phase,
partial
coefficients
DEPs
ranged
−0.22
0.18.
Full-Text
Open
Access