Omics based technology application in poultry meat research DOI Creative Commons
Huaijun Zhou,

Austin Quach,

Mahesh N. Nair

et al.

Poultry Science, Journal Year: 2024, Volume and Issue: 104(1), P. 104643 - 104643

Published: Dec. 5, 2024

Omics techniques, including genomics, transcriptomics, proteomics, metabolomics, and lipidomics, analyze entire sets of biological molecules to seek comprehensive knowledge on a particular phenotype. These approaches have been extensively utilized identify both biomarkers mechanisms for various physiological conditions in livestock poultry. The purpose this symposium was not only focus how recent omics technologies can be used gather, integrate, interpret data produced by methodologies poultry research, but also highlight bioinformatics increased our understanding meat quality problems other complex traits. This Poultry Science Association paper includes 5 sections that cover: 1) functional annotation cis-regulatory elements the genome informs genetic control traits poultry, 2) mass spectrometry 3) proteomic investigate quality, 4) spatial transcriptomics metabolomics studies wooden breast disease, 5) multiomics analyses chicken spaghetti meat. topics provide insights into molecular components contribute structure, function, dynamics underlying influencing traits, myopathies. information will ultimately improving composition products.

Language: Английский

Plant metabolomics: applications and challenges in the era of multi-omics big data DOI Creative Commons

Yingchen Hao,

Zhonghui Zhang,

Erping Luo

et al.

aBIOTECH, Journal Year: 2025, Volume and Issue: 6(1), P. 116 - 132

Published: Jan. 23, 2025

Abstract Plant metabolites are crucial for the growth, development, environmental adaptation, and nutritional quality of plants. metabolomics, a key branch systems biology, involves comprehensive analysis interpretation composition, variation, functions these metabolites. Advances in technology have transformed plant metabolomics into sophisticated process involving sample collection, metabolite extraction, high-throughput analysis, data processing, multidimensional statistical analysis. In today’s era big data, field is witnessing an explosion acquisition, offering insight complexity dynamics metabolism. Moreover, multiple omics strategies can be integrated to reveal interactions regulatory networks across different molecular levels, deepening our understanding biological processes. this review, we highlight recent advances challenges emphasizing roles technique improving crop varieties, enhancing value, increasing stress resistance. We also explore scientific foundations its applications medicine, ecological conservation.

Language: Английский

Citations

1
Plant Sample Preparation for Metabolomics, Lipidomics, Ionomics, Fluxomics, and Peptidomics DOI Creative Commons
W.B. Silva, Gabriel Felipe Hispagnol, Emanuel Victor dos Santos Nunes

et al.

Separations, Journal Year: 2025, Volume and Issue: 12(2), P. 21 - 21

Published: Jan. 24, 2025

Plant metabolomics, lipidomics, ionomics, fluxomics, and peptidomics are essential approaches for exploring how plants respond to epigenetic, pathological, environmental stimuli through comprehensive chemical profiling. Over the past decades, significant progress has been made in protocols methodologies address challenges sample collection extraction. Despite these advancements, preparation remains intricate, with ongoing debates about most effective strategies. This review emphasizes importance of clear research questions well-designed experiments minimize complexity, save time, enhance reproducibility. It provides an overview key steps fields, including harvesting, drying, extraction, data pre-acquisition major analytical platforms. By discussing best practices common challenges, this aims streamline methods promote more consistent reliable outcomes.

Language: Английский

Citations

0
Microbiota–Gut–Brain Axis: Mass-Spectrometry-Based Metabolomics in the Study of Microbiome Mediators—Stress Relationship DOI Creative Commons
Nicolò Interino,

Rosalba Vitagliano,

Federica D’Amico

et al.

Biomolecules, Journal Year: 2025, Volume and Issue: 15(2), P. 243 - 243

Published: Feb. 7, 2025

The microbiota-gut-brain axis is a complex bidirectional communication system that involves multiple interactions between intestinal functions and the emotional cognitive centers of brain. These are mediated by molecules (metabolites) produced in both areas, which considered mediators. To shed light on this mechanism, still largely unknown, reliable characterization mediators essential. Here, we review most studied metabolites axis, metabolic pathways they involved, their functions. This focuses mainly use mass spectrometry for determination, reporting latest analytical methods, limitations, future perspectives. strategy qualitative-quantitative must be order to elucidate molecular mechanisms underlying influence above-mentioned stress resilience or vulnerability.

Language: Английский

Citations

0
Reversed-phase liquid chromatography/mass spectrometry approach for (un)targeted analysis of polar to mid-polar metabolites DOI
Eva Cífková,

Zdeňka Neuerová,

Miroslav Lísa

et al.

Talanta, Journal Year: 2025, Volume and Issue: unknown, P. 127853 - 127853

Published: Feb. 1, 2025

Language: Английский

Citations

0
Nutrient stress triggers sugar-mediated carotenoid production in algal-bacterial interactions DOI
Abdalah Makaranga, Pannaga Pavan Jutur

World Journal of Microbiology and Biotechnology, Journal Year: 2025, Volume and Issue: 41(3)

Published: March 1, 2025

Language: Английский

Citations

0
Semi-quantitative lipidomics reveals the characteristics of lipid metabolism in sheep milk fermentation DOI
Fei Tong,

Shangchen Fu,

Yufei Shen

et al.

Food Research International, Journal Year: 2025, Volume and Issue: unknown, P. 116517 - 116517

Published: April 1, 2025

Language: Английский

Citations

0
Discrepancies in the rumen microbiome, metabolome, and serum metabolome among Hu sheep, East Friesian sheep, and East Friesian × Hu crossbred sheep DOI Creative Commons

Ruilin Du,

Shuo Yan,

Wenna Yao

et al.

Frontiers in Microbiology, Journal Year: 2025, Volume and Issue: 16

Published: April 28, 2025

Crossbreeding has emerged as a strategy to combine desirable traits from different sheep breeds, with the goal of enhancing productivity, disease resistance, and growth rates. This study compares immune responses, rumen microbiomes, serum metabolites Hu sheep, East Friesian (EF) crossbred × EF (DH) explore effects crossbreeding on productivity resistance. exhibited significantly higher lymphocyte counts ( p < 0.05) white blood cell (WBC) compared DH indicating stronger basal responses. showed superior cluster differentiation 4+/cluster 8+ (CD4+/CD8+) T ratio sheep. Rumen microbiome analysis revealed distinct microbial profiles; relative abundances Prevotella 0.05), which is associated improved Metabolomic significant differences in bile acid profiles: levels 6-keto lithocholic (6-ketoLCA), cholic chenodeoxycholic (CDCA), 3 β -hyodeoxycholic (3β-HDCA) function gut health. These results indicate that improves resilience metabolic efficiency, implications for breeding strategies designed enhance livestock

Language: Английский

Citations

0
Omics based technology application in poultry meat research DOI Creative Commons
Huaijun Zhou,

Austin Quach,

Mahesh N. Nair

et al.

Poultry Science, Journal Year: 2024, Volume and Issue: 104(1), P. 104643 - 104643

Published: Dec. 5, 2024

Omics techniques, including genomics, transcriptomics, proteomics, metabolomics, and lipidomics, analyze entire sets of biological molecules to seek comprehensive knowledge on a particular phenotype. These approaches have been extensively utilized identify both biomarkers mechanisms for various physiological conditions in livestock poultry. The purpose this symposium was not only focus how recent omics technologies can be used gather, integrate, interpret data produced by methodologies poultry research, but also highlight bioinformatics increased our understanding meat quality problems other complex traits. This Poultry Science Association paper includes 5 sections that cover: 1) functional annotation cis-regulatory elements the genome informs genetic control traits poultry, 2) mass spectrometry 3) proteomic investigate quality, 4) spatial transcriptomics metabolomics studies wooden breast disease, 5) multiomics analyses chicken spaghetti meat. topics provide insights into molecular components contribute structure, function, dynamics underlying influencing traits, myopathies. information will ultimately improving composition products.

Language: Английский

Citations

1