ACS Central Science,
Journal Year:
2019,
Volume and Issue:
5(11), P. 1844 - 1856
Published: Oct. 24, 2019
Enzymes
are
powerful
catalysts
for
site-selective
C-H
bond
functionalization.
Identifying
suitable
enzymes
this
task
and
biocatalysis
in
general
remains
challenging,
however,
due
to
the
fundamental
difficulty
of
predicting
catalytic
activity
from
sequence
information.
In
study,
family-wide
profiling
was
used
obtain
sequence-function
information
on
flavin-dependent
halogenases
(FDHs).
This
broad
survey
provided
a
number
insights
into
FDH
activity,
including
halide
specificity
substrate
preference,
that
were
not
apparent
more
focused
studies
reported
date.
Regions
space
most
likely
contain
halogenating
small-molecule
substrates
also
identified.
FDHs
with
novel
scope
complementary
regioselectivity
large,
three-dimensionally
complex
compounds
characterized
preparative-scale
late-stage
many
cases,
these
provide
activities
required
several
rounds
directed
evolution
accomplish
previous
efforts,
highlighting
approach
can
achieve
significant
time
savings
biocatalyst
identification
advanced
starting
points
further
evolution.
Chemical Reviews,
Journal Year:
2018,
Volume and Issue:
119(4), P. 2192 - 2452
Published: Nov. 27, 2018
C–H
activation
has
surfaced
as
an
increasingly
powerful
tool
for
molecular
sciences,
with
notable
applications
to
material
crop
protection,
drug
discovery,
and
pharmaceutical
industries,
among
others.
Despite
major
advances,
the
vast
majority
of
these
functionalizations
required
precious
4d
or
5d
transition
metal
catalysts.
Given
cost-effective
sustainable
nature
earth-abundant
first
row
metals,
development
less
toxic,
inexpensive
3d
catalysts
gained
considerable
recent
momentum
a
significantly
more
environmentally-benign
economically-attractive
alternative.
Herein,
we
provide
comprehensive
overview
on
until
summer
2018.
Nature Reviews Chemistry,
Journal Year:
2021,
Volume and Issue:
5(10), P. 726 - 749
Published: Aug. 19, 2021
An
ever-increasing
demand
for
novel
antimicrobials
to
treat
life-threatening
infections
caused
by
the
global
spread
of
multidrug-resistant
bacterial
pathogens
stands
in
stark
contrast
current
level
investment
their
development,
particularly
fields
natural-product-derived
and
synthetic
small
molecules.
New
agents
displaying
innovative
chemistry
modes
action
are
desperately
needed
worldwide
tackle
public
health
menace
posed
antimicrobial
resistance.
Here,
our
consortium
presents
a
strategic
blueprint
substantially
improve
ability
discover
develop
new
antibiotics.
We
propose
both
short-term
long-term
solutions
overcome
most
urgent
limitations
various
sectors
research
funding,
aiming
bridge
gap
between
academic,
industrial
political
stakeholders,
unite
interdisciplinary
expertise
order
efficiently
fuel
translational
pipeline
benefit
future
generations.
Chemical Reviews,
Journal Year:
2018,
Volume and Issue:
118(7), P. 3887 - 3964
Published: April 2, 2018
New
methods
for
preparation
of
tailor-made
fluorine-containing
compounds
are
in
extremely
high
demand
nearly
every
sector
chemical
industry.
The
asymmetric
construction
quaternary
C-F
stereogenic
centers
is
the
most
synthetically
challenging
and,
consequently,
least
developed
area
research.
As
a
reflection
this
apparent
methodological
deficit,
pharmaceutical
drugs
featuring
constitute
less
than
1%
all
medicines
currently
on
market
or
clinical
development.
Here
we
provide
comprehensive
review
current
research
activity
area,
including
such
general
directions
as
electrophilic
fluorination
via
organocatalytic
and
transition-metal
catalyzed
reactions,
elaboration
substrates
alkylations,
Mannich,
Michael,
aldol
additions,
cross-coupling
biocatalytic
approaches.
Chemical Reviews,
Journal Year:
2018,
Volume and Issue:
118(4), P. 1742 - 1769
Published: Jan. 11, 2018
Over
time,
organisms
have
evolved
strategies
to
cope
with
the
abundance
of
dioxygen
on
Earth.
Oxygen-utilizing
enzymes
tightly
control
reactions
involving
O2
mostly
by
modulating
reactivity
their
cofactors.
Flavins
are
extremely
versatile
cofactors
that
capable
undergoing
redox
accepting
either
one
electron
or
two
electrons,
alternating
between
oxidized
and
reduced
states.
The
physical
chemical
principles
flavin-based
chemistry
been
investigated
widely.
In
following
pages
we
summarize
state
art
a
key
area
research
in
flavin
enzymology:
molecular
basis
for
activation
flavin-dependent
oxidases
monooxygenases.
general
terms,
use
as
an
acceptor
produce
H2O2,
while
monooxygenases
activate
forming
intermediate
insert
oxygen
atom
into
substrate.
First,
analyze
how
reaches
cofactor
embedded
protein
matrix
through
dedicated
access
pathways.
Then
approach
from
perspective
monooxygenases,
preferred
intermediate,
C(4a)-(hydro)peroxyflavin,
cases
which
other
intermediates
described.
Finally,
focus
understanding
architectures
developed
active
sites
promote
factors
operate
its
reactivity.
Medicinal Research Reviews,
Journal Year:
2017,
Volume and Issue:
38(4), P. 1255 - 1294
Published: Oct. 24, 2017
Natural
product
libraries
contain
specialized
metabolites
derived
from
plants,
animals,
and
microorganisms
that
play
a
pivotal
role
in
drug
discovery
due
to
their
immense
structural
diversity
wide
variety
of
biological
activities.
The
strategies
greatly
extend
natural
scaffolds
through
available
chemical
approaches
offer
unique
opportunities
access
new
series
analogues,
enabling
the
construction
diverse
product-like
libraries.
affordability
these
structurally
molecules
has
been
crucial
step
accelerating
discovery.
This
review
provides
an
overview
various
exploit
compounds
for
product-based
development,
drawing
upon
examples
illustrate
each
strategy.
Science,
Journal Year:
2023,
Volume and Issue:
379(6639), P. 1358 - 1363
Published: March 31, 2023
Enzyme
function
annotation
is
a
fundamental
challenge,
and
numerous
computational
tools
have
been
developed.
However,
most
of
these
cannot
accurately
predict
functional
annotations,
such
as
enzyme
commission
(EC)
number,
for
less-studied
proteins
or
those
with
previously
uncharacterized
functions
multiple
activities.
We
present
machine
learning
algorithm
named
CLEAN
(contrastive
learning-enabled
annotation)
to
assign
EC
numbers
enzymes
better
accuracy,
reliability,
sensitivity
compared
the
state-of-the-art
tool
BLASTp.
The
contrastive
framework
empowers
confidently
(i)
annotate
understudied
enzymes,
(ii)
correct
mislabeled
(iii)
identify
promiscuous
two
more
numbers-functions
that
we
demonstrate
by
systematic
in
silico
vitro
experiments.
anticipate
this
will
be
widely
used
predicting
thereby
advancing
many
fields,
genomics,
synthetic
biology,
biocatalysis.
Biotechnology Advances,
Journal Year:
2021,
Volume and Issue:
51, P. 107712 - 107712
Published: Feb. 15, 2021
Flavoprotein
monooxygenases
(FPMOs)
are
single-
or
two-component
enzymes
that
catalyze
a
diverse
set
of
chemo-,
regio-
and
enantioselective
oxyfunctionalization
reactions.
In
this
review,
we
describe
how
FPMOs
have
evolved
from
model
in
mechanistic
flavoprotein
research
to
biotechnologically
relevant
catalysts
can
be
applied
for
the
sustainable
production
valuable
chemicals.
After
historical
account
development
FPMO
field,
explain
classification
system,
which
is
primarily
based
on
protein
structural
properties
electron
donor
specificities.
We
then
summarize
most
appealing
reactions
catalyzed
by
each
group
with
focus
different
types
oxygenation
chemistries.
Wherever
relevant,
report
engineering
strategies
been
used
improve
robustness
applicability
FPMOs.