Genome Research,
Journal Year:
2009,
Volume and Issue:
19(7), P. 1141 - 1152
Published: April 21, 2009
High-throughput
sequencing
studies
and
new
software
tools
are
revolutionizing
microbial
community
analyses,
yet
the
variety
of
experimental
computational
methods
can
be
daunting.
In
this
review,
we
discuss
some
different
approaches
to
profiling,
highlighting
strengths
weaknesses
various
approaches,
methodologies,
analytical
methods.
We
also
address
one
key
question
emerging
from
Human
Microbiome
Projects:
Is
there
a
substantial
core
abundant
organisms
or
lineages
that
all
share?
It
appears
in
human
body
habitats,
such
as
hand
gut,
diversity
among
individuals
is
so
great
rule
out
possibility
any
species
at
high
abundance
individuals:
possible
focus
should
instead
on
higher-level
taxa
functional
genes
instead.
Nature Communications,
Journal Year:
2015,
Volume and Issue:
6(1)
Published: June 23, 2015
Abstract
Obesity
is
associated
with
low-grade
chronic
inflammation
and
intestinal
dysbiosis.
Ganoderma
lucidum
a
medicinal
mushroom
used
in
traditional
Chinese
medicine
putative
anti-diabetic
effects.
Here,
we
show
that
water
extract
of
mycelium
(WEGL)
reduces
body
weight,
insulin
resistance
mice
fed
high-fat
diet
(HFD).
Our
data
indicate
WEGL
not
only
reverses
HFD-induced
gut
dysbiosis—as
indicated
by
the
decreased
Firmicutes-to-Bacteroidetes
ratios
endotoxin-bearing
Proteobacteria
levels—but
also
maintains
barrier
integrity
metabolic
endotoxemia.
The
anti-obesity
microbiota-modulating
effects
are
transmissible
via
horizontal
faeces
transfer
from
WEGL-treated
to
HFD-fed
mice.
We
further
high
molecular
weight
polysaccharides
(>300
kDa)
isolated
produce
similar
results
G.
its
may
be
as
prebiotic
agents
prevent
dysbiosis
obesity-related
disorders
obese
individuals.
Proceedings of the National Academy of Sciences,
Journal Year:
2008,
Volume and Issue:
105(46), P. 17994 - 17999
Published: Nov. 13, 2008
Bacteria
thrive
on
and
within
the
human
body.
One
of
largest
human-associated
microbial
habitats
is
skin
surface,
which
harbors
large
numbers
bacteria
that
can
have
important
effects
health.
We
examined
palmar
surfaces
dominant
nondominant
hands
51
healthy
young
adult
volunteers
to
characterize
bacterial
diversity
assess
its
variability
between
individuals.
used
a
novel
pyrosequencing-based
method
allowed
us
survey
hand
surface
communities
at
an
unprecedented
level
detail.
The
skin-associated
was
surprisingly
high;
typical
harbored
>150
unique
species-level
phylotypes,
we
identified
total
4,742
phylotypes
across
all
examined.
Although
there
core
set
taxa
commonly
found
palm
observed
pronounced
intra-
interpersonal
variation
in
community
composition:
from
same
individual
shared
only
17%
their
with
different
individuals
sharing
13%.
Women
had
significantly
higher
than
men,
composition
affected
by
handedness,
time
since
last
washing,
individual's
sex.
ecology
illustrated
this
study
emphasizes
challenges
inherent
defining
what
constitutes
"healthy"
community;
addressing
these
will
be
critical
for
International
Human
Microbiome
Project.
Proceedings of the National Academy of Sciences,
Journal Year:
2015,
Volume and Issue:
112(35), P. 11060 - 11065
Published: Aug. 17, 2015
Significance
The
human
indigenous
microbial
communities
(microbiota)
play
critical
roles
in
health
and
may
be
especially
important
for
mother
fetus
during
pregnancy.
Using
a
case-control
cohort
of
40
women,
we
characterized
weekly
variation
the
vaginal,
gut,
oral
microbiota
after
Microbiota
membership
remained
relatively
stable
at
each
body
site
An
altered
vaginal
community
was
associated
with
preterm
birth;
this
finding
corroborated
by
an
analysis
samples
from
additional
nine
women.
We
also
discovered
abrupt
change
delivery
that
persisted
some
cases
least
1
y.
Our
findings
suggest
pregnancy
outcomes
might
predicted
features
early
gestation.
Genome Research,
Journal Year:
2009,
Volume and Issue:
19(7), P. 1141 - 1152
Published: April 21, 2009
High-throughput
sequencing
studies
and
new
software
tools
are
revolutionizing
microbial
community
analyses,
yet
the
variety
of
experimental
computational
methods
can
be
daunting.
In
this
review,
we
discuss
some
different
approaches
to
profiling,
highlighting
strengths
weaknesses
various
approaches,
methodologies,
analytical
methods.
We
also
address
one
key
question
emerging
from
Human
Microbiome
Projects:
Is
there
a
substantial
core
abundant
organisms
or
lineages
that
all
share?
It
appears
in
human
body
habitats,
such
as
hand
gut,
diversity
among
individuals
is
so
great
rule
out
possibility
any
species
at
high
abundance
individuals:
possible
focus
should
instead
on
higher-level
taxa
functional
genes
instead.