Scientific Reports,
Journal Year:
2021,
Volume and Issue:
11(1)
Published: Feb. 17, 2021
Abstract
Multi-locus
genetic
data
are
pivotal
in
phylogenetics.
Today,
high-throughput
sequencing
(HTS)
allows
scientists
to
generate
an
unprecedented
amount
of
such
from
any
organism.
However,
HTS
is
resource
intense
and
may
not
be
accessible
wide
parts
the
scientific
community.
In
phylogeography,
use
has
concentrated
on
a
few
taxonomic
groups,
used
resolve
phylogeographic
pattern
often
seems
arbitrary.
We
explore
performance
two
marker
sampling
strategies
effect
quantity
comparative
framework
focusing
six
species
(arthropods
plants).
The
same
analyses
were
applied
inferred
amplified
fragment
length
polymorphism
fingerprinting
(AFLP),
cheap,
non-HTS
based
technique
that
able
straightforwardly
produce
several
hundred
markers,
restriction
site
associated
DNA
(RADseq),
more
expensive,
HTS-based
produces
thousands
single
nucleotide
polymorphisms.
show
four
study
species,
AFLP
leads
results
comparable
with
those
RADseq.
While
we
do
aim
contest
advantages
techniques,
also
robust
delimit
evolutionary
entities
both
plants
animals.
demonstrated
similarity
techniques
strengthens
biological
conclusions
past,
important
finding
given
utilization
over
last
decades.
emphasize
whenever
delimitation
central
goal,
as
it
many
fields
biodiversity
research,
still
adequate
technique.
Journal of Biogeography,
Journal Year:
2022,
Volume and Issue:
49(6), P. 1006 - 1020
Published: April 19, 2022
Abstract
The
occurrence
and
origin
of
dry
grasslands
their
rich
biota
in
the
moderately
humid
Central‐European
climate
have
fascinated
scientists
for
over
a
century.
Modern
palaeoecological
phylogeographical
data
support
earlier
hypotheses
that
these
are
late
Pleistocene
relicts
can
therefore
be
considered
part
Eurasian
forest–steppe
biome.
However,
it
is
still
unclear
which
factors
fostered
maintenance
steppe
patches
Central
Europe
throughout
Holocene.
Here,
we
provide
an
overview
main
hypotheses,
stress,
respectively,
effects
climate,
edaphic
conditions
disturbances.
We
then
develop
general
conceptual
framework
on
how
three
interact
to
form
mosaics.
thereby
emphasize
role
topography
as
crucial
control
patterns
at
landscape
scale.
Topography
related
several
mechanistic
drivers
influence
vegetation
processes,
such
near‐surface
microclimate
soil
formation.
Consequently,
topographic
variation
allows
both
forest
occur
beyond
macroclimatic
niche,
favouring
development
To
illustrate
our
framework,
demonstrate
interactive
effect
macroclimate
108
selected
European
sites.
Although
developed
focusing
current
distribution
forest–steppe,
suggest
contributes
understanding
similar
transitions
between
temperate
biomes
past
well
elsewhere
world.
Nature Communications,
Journal Year:
2022,
Volume and Issue:
13(1)
Published: April 8, 2022
Quaternary
climatic
oscillations
had
a
large
impact
on
European
biogeography.
Alternation
of
cold
and
warm
stages
caused
recurrent
glaciations,
massive
vegetation
shifts,
large-scale
range
alterations
in
many
species.
The
Eurasian
steppe
biome
its
grasslands
are
noteworthy
example;
they
underwent
climate-driven,
contractions
during
expansions
stages.
Here,
we
evaluate
the
these
late
demography
several
phylogenetically
distant
plant
insect
species,
typical
steppes.
We
compare
three
explicit
demographic
hypotheses
by
applying
an
approach
combining
convolutional
neural
networks
with
approximate
Bayesian
computation.
identified
congruent
responses
stage
expansion
contraction
across
all
but
also
species-specific
effects.
history
biota
reflects
major
paleoecological
turning
points
emphasizes
role
climate
as
driving
force
underlying
patterns
genetic
variance
level.
Frontiers in Plant Science,
Journal Year:
2022,
Volume and Issue:
13
Published: June 23, 2022
The
Mediterranean
Basin
is
an
important
biodiversity
hotspot
and
one
of
the
richest
areas
in
world
terms
plant
diversity.
Its
flora
parallels
several
aspects
that
Eurasian
steppes
adjacent
Irano-Turanian
floristic
region.
Euphorbia
nicaeensis
alliance
spans
this
immense
area
from
western
to
Central
Asia.
Using
array
complementary
methods,
ranging
phylogenomic
phylogenetic
data
through
relative
genome
size
(RGS)
estimation
morphometry,
we
explored
relationships
biogeographic
connections
among
taxa
group.
We
identified
main
evolutionary
lineages,
which
mostly
correspond
described
taxa.
However,
despite
use
highly
resolving
Restriction
Site
Associated
DNA
(RAD)
sequencing
data,
lineages
remain
ambiguous.
This
likely
due
hybridisation,
lineage
sorting
triggered
by
rapid
range
expansion,
polyploidisation.
cryptic
diversity
Mediterranean,
also
correlated
with
RGS
and,
partly,
also,
morphological
divergence,
rendering
description
a
new
species
necessary.
Biogeographic
analyses
suggest
Western
Asia
source
for
colonisation
group
highlight
contribution
region
high
Basin.
diversification
E.
was
vicariance
isolated
Pleistocene
refugia,
adaptation
divergent
ecological
conditions,
lesser
extent,
Taxon,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 6, 2025
Abstract
We
explored
the
diversification
of
south‐eastern
and
eastern
European
Euphorbia
agraria
s.l.
applying
molecular
(amplified
fragment
length
polymorphism
[AFLP]
fingerprinting
sequencing
nuclear
ribosomal
internal
transcribed
spacer
[ITS]),
cytogenetic
(relative
genome
size
[RGS]
estimations)
morphometric
methods.
The
AFLP
data,
to
a
lesser
extent
ITS
sequences,
inferred
two
main
phylogenetic
lineages
corresponding
Balkan‐Pontic
E.
central
Balkan
subhastata
;
their
closest
relatives
are
tommasiniana
endemic
north‐westernmost
Peninsula
salicifolia
,
which
is
more
widespread
in
Peninsula.
Genetic
divergence
reflected
morphological
ecological
differentiation,
rendering
recognition
–
previously
segregated
as
variety
at
species
level,
resulting
revised
taxonomic
treatment.
thrives
grasslands
ruderal
places
that
lowlands
adjacent
Pontic
region;
continuity
habitat
probably
confers
weak
genetic
differentiation
within
this
species.
On
other
hand,
grows
screes
open
forests
river
gorges
separated
by
mountain
ridges,
leading
pronounced
inter‐population
differentiation.
RGS
data
revealed
di‐
tetraploid
populations
both
combination
with
results
suggest
recurrent
autopolyploidisation.
Our
support
hotspot
diversity
indicate
future
biodiversity
research
part
Europe
should
focus
on
central,
southern
were
largely
neglected
previous
studies.
Frontiers in Plant Science,
Journal Year:
2025,
Volume and Issue:
16
Published: April 14, 2025
The
Eurasian
steppes
are
the
second-largest
continuous
biome
on
Earth.
Euphorbia
glareosa
,
a
member
of
nicaeensis
alliance,
is
widespread
species
in
macroclimatically
defined
zonal
Pontic
and
westerly
southerly
adjacent
extrazonal
steppe
outposts
determined
by
local
climatic,
topographic,
edaphic
conditions.
In
steppes,
particular
within
Anatolian,
Danubian,
Thracian,
Pannonian
grasslands,
it
more
or
less
continuously
distributed,
but
with
several
disjunct
occurrences
central
Balkan
Peninsula,
which
renowned
for
its
high
biodiversity.
Several
(infra)specific
taxa
have
been
recognised
E.
s.l.,
relationships
among
them
remain
elusive.
We
applied
an
integrative
approach
ranging
from
cytogenetics
(relative
genome
size
ploidy
estimation,
chromosome
counting)
morphometrics
to
phylogenetics
(internal
ribosomal
transcribed
spacer
sequencing
amplified
length
polymorphism
fingerprinting),
geographic
focus
eastern
Peninsula.
inferred
multiple
polyploidisations
group
complex
phylogenetic
patterns.
uncovered
cryptic
lineages
where
description
two
new
species,
diploid
balcanica
tetraploid
skopjensis
was
necessary.
addition,
we
revealed
diversity,
partly
related
polyploidisations,
populations
likely
pertaining
different
species.
Finally,
main
phylogeographic
split
between
(1)
Pannonian,
populations,
(2)
easternmost
Balkan,
Pontic,
Anatolian
populations.
Our
results
thus
highlight
outstanding
conservation
value
European
that
not
just
outpost
steppes.
also
point
remarkable
biodiversity
Peninsula
need
further
in-depth
studies
this
hotspot.
Alpine Botany,
Journal Year:
2021,
Volume and Issue:
132(1), P. 21 - 28
Published: July 29, 2021
Abstract
The
main,
continuous
mountain
range
of
the
European
Alpine
System
(i.e.,
Alps)
hosts
a
diversified
pool
species
whose
evolution
has
long
been
investigated.
legacy
past
climate
changes
on
distribution
high-elevation
plants
as
well
taxa
differentially
adapted
to
mosaic
edaphic
conditions
surmised
ecotypes
calcareous,
siliceous,
serpentine
bedrocks)
and
origin
new
are
here
discussed
based
available
evidence
from
endemic
across
Alps.
integration
main
spatial
ecological
patterns
within
among
supports
speciation
driven
by
isolation
in
glacial
refugia
where
plant
populations
survived
during
cold
phases
hindered
intense
gene
flow
along
expansion
pathways
warm
phases.
Despite
genetic
differentiation
matching
environmental
heterogeneity,
processes
underlying
dynamics
ranges
likely
promoted
recurrent
homogenization
incipient
divergence
generally
completion
(except
for
cases
hybrid
speciation).
Even
selective
pressures
toxic
bedrocks
such
seemingly
fail
support
speciation.
Accordingly,
typical
scenarios
whereby
local
adaptation
heterogeneity
initiates
long-term
reduction
may
rarely
be
at
stable
Although
consistent
with
neutral
reproductive
yielded
limited
diversification,
mechanisms
heterogeneous
landscapes
Alps
remain
insufficiently
known.
Necessary
advances
reliably
understand
biodiversity
identify
possible
museums
or
cradles
variation
face
discussed.
Alpine Botany,
Journal Year:
2022,
Volume and Issue:
132(2), P. 195 - 209
Published: June 22, 2022
Abstract
The
inner-alpine
dry
valleys
of
the
Swiss
Alps
are
characterized
by
subcontinental
climate,
leading
to
many
peculiarities
in
grassland
species
composition.
Despite
their
well-known
uniqueness,
comprehensive
studies
on
biodiversity
patterns
grasslands
these
were
still
missing.
To
close
this
gap,
we
sampled
161
10-m
2
vegetation
plots
Rhône,
Rhine
and
Inn
valleys,
recording
vascular
plants,
terricolous
bryophyte
lichen
species,
as
well
environmental
data.
Additionally,
tested
scale-dependence
drivers
using
34
nested-plot
series
with
seven
grain
sizes
(0.0001–100
m
).
We
analysed
effects
related
productivity/stress,
disturbance
within-plot
heterogeneity
richness.
Mean
richness
ranged
from
2.3
0.0001
58.8
100
.
For
all
taxa
combined,
most
relevant
at
size
10
southing
(negative),
litter
mean
annual
precipitation
(unimodal),
gravel
cover
inclination
(unimodal)
(unimodal).
plants
pattern
was
similar,
while
differed
opposite
relationship
negative
influences
herb
layer
height,
grazing
mowing.
explained
variance
multiple
regression
model
increased
size,
very
low
values
for
smallest
two
sizes.
While
had
high
importance
fiver
larger
sizes,
pH
particularly
important
intermediate
largest
findings
emphasize
taxonomic
group
vegetation,
consistent
ecological
theory.
Differences
diversity–environment
relationships
among
three
groups
can
partly
be
asymmetric
competition
that
leads
diversity
where
do
vice
versa.
relatively
alpha
compared
similar
communities
other
parts
Palaearctic
remains
puzzling,
especially
because
stands
often
large
well-preserved.