Development,
Journal Year:
2024,
Volume and Issue:
151(4)
Published: Feb. 15, 2024
ABSTRACT
Embryogenesis
results
from
the
coordinated
activities
of
different
signaling
pathways
controlling
cell
fate
specification
and
morphogenesis.
In
vertebrate
gastrulation,
both
Nodal
BMP
play
key
roles
in
germ
layer
morphogenesis,
yet
their
interplay
to
coordinate
embryo
patterning
with
morphogenesis
is
still
insufficiently
understood.
Here,
we
took
a
reductionist
approach
using
zebrafish
embryonic
explants
study
coordination
for
We
show
that
triggers
explant
elongation
by
inducing
mesendodermal
progenitors
but
also
suppressing
activity
at
site
mesendoderm
induction.
Consistent
this,
ectopic
blocks
alignment
oriented
intercalations,
processes
during
elongation.
Translating
these
ex
vivo
observations
intact
showed
that,
similar
explants,
suppresses
effect
on
intercalations
dorsal
domain,
thus
allowing
robust
axis
These
findings
suggest
dual
function
effects
portion
mesendoderm.
BioEssays,
Journal Year:
2024,
Volume and Issue:
46(12)
Published: Aug. 28, 2024
Abstract
Gastrulation
is
a
key
milestone
in
the
development
of
an
organism.
It
period
cell
proliferation
and
coordinated
cellular
rearrangement,
that
creates
outline
body
plan.
Our
current
understanding
mammalian
gastrulation
has
been
improved
by
embryo
culture,
but
there
are
still
many
open
questions
difficult
to
address
because
intrauterine
embryos
low
number
specimens.
In
case
humans,
additional
difficulties
associated
with
technical
ethical
challenges.
Over
last
few
years,
pluripotent
stem
models
being
developed
have
potential
become
useful
tools
understand
gastrulation.
Here
we
review
these
special
emphasis
on
gastruloids
provide
survey
methods
produce
them
robustly,
their
uses,
relationship
embryos,
prospects
as
well
limitations.
Development,
Journal Year:
2025,
Volume and Issue:
152(7)
Published: April 1, 2025
ABSTRACT
Pluripotency,
the
capacity
to
generate
all
cells
of
body,
is
a
defining
property
transient
population
epiblast
found
in
pre-,
peri-
and
post-implantation
mammalian
embryos.
As
development
progresses,
undergo
dynamic
transitions
pluripotency
states,
concurrent
with
specification
extra-embryonic
embryonic
lineages.
Recently,
stem
cell-based
models
pre-
human
have
been
developed
using
that
capture
key
properties
at
different
developmental
stages.
Here,
we
review
early
primate
development,
comparing
states
vivo
cultured
pluripotent
representative
these
states.
We
consider
how
status
starting
influences
embryo
and,
turn,
what
can
learn
about
epiblast.
Finally,
discuss
limitations
questions
arising
from
pioneering
studies
this
emerging
field.
Development,
Journal Year:
2024,
Volume and Issue:
151(22)
Published: Nov. 15, 2024
Minimal
in
vitro
systems
composed
of
embryonic
stem
cells
(ESCs)
have
been
shown
to
recapitulate
the
establishment
anteroposterior
(AP)
axis.
In
contrast
native
embryo,
ESC
aggregates
-
such
as
gastruloids
can
break
symmetry,
which
is
demarcated
by
polarization
mesodermal
marker
T,
autonomously
without
any
localized
external
cues.
However,
associated
earliest
patterning
events,
spatial
restriction
cell
fates
and
concomitant
transcriptional
changes,
remain
poorly
understood.
Here,
we
dissect
dynamics
AP
axis
mouse
gastruloids,
particularly
before
Wnt
stimulation.
Through
single-cell
RNA
sequencing,
identify
key
state
transitions
molecular
signatures
T+
T-
populations
underpinning
polarization.
We
also
show
that
this
process
robust
modifications
aggregate
size.
Finally,
transcriptomic
comparison
with
embryo
indicates
develop
similar
mesendodermal
types,
despite
initial
differences
their
primed
pluripotent
populations,
adopt
a
more
mesenchymal
lieu
an
epiblast-like
transcriptome.
Hence,
our
findings
suggest
possibility
alternate
states
vivo
converge
onto
fates.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 17, 2024
Mammalian
embryonic
size
is
tightly
controlled
with
checkpoints
and
compensatory
mechanisms
correcting
defects.
Here,
we
take
advantage
of
gastruloids,
a
stem
cell
embryoid
system
not
subject
to
most
controls,
study
the
role
in
emergent
properties
mammalian
embryogenesis.
We
report
that
gastruloids
exhibit
robust
morphology
transcriptional
profiles
within
range.
However,
affects
dynamics,
and,
outside
range
morphogenesis,
precision
anterior-posterior
(AP)
axial
elongation.
Gastruloid
elongation
exhibits
active
cellular
contractility,
requires
planar
polarity
(PCP),
adhesion
cell-cell
contact
remodelling.
Smaller
initiate
earlier,
correlated
an
earlier
Brachyury
polarisation.
expression
increases
tissue
fluidity.
Axis
formation
regulated
by
balance
multifoci
coalescence
timing
initiation
programme.
Sizes
beyond
can
modify
relative
composition.
Very
small
aggregates
have
increased
neural
fate
bias,
accompanied
loss
paraxial
mesoderm
mediated
differences
Nodal
signalling
activity.
Cell Structure and Function,
Journal Year:
2025,
Volume and Issue:
50(1), P. 1 - 14
Published: Jan. 1, 2025
Live
imaging
techniques
have
revolutionized
our
understanding
of
paracrine
signaling,
a
crucial
form
cell-to-cell
communication
in
biological
processes.
This
review
examines
recent
advances
visualizing
and
tracking
factors
through
four
key
stages:
secretion
from
producing
cells,
diffusion
extracellular
space,
binding
to
target
activation
intracellular
signaling
within
cells.
Paracrine
factor
can
be
directly
visualized
by
fluorescent
protein
tagging
ligand,
or
indirectly
the
cleavage
transmembrane
pro-ligands
plasma
membrane
fusion
endosomes
comprising
factors.
Diffusion
has
been
studied
using
such
as
fluorescence
correlation
spectroscopy
(FCS),
recovery
after
photobleaching
(FRAP),
decay
photoactivation
(FDAP),
single-molecule
tracking.
Binding
cells
various
biosensors,
including
GPCR-activation-based
(GRAB)
sensors
Förster
resonance
energy
transfer
(FRET)
probes
for
receptor
tyrosine
kinases.
Finally,
is
monitored
biosensors
second
messengers,
transcription
factors,
so
on.
In
addition
tools,
also
highlights
emerging
optogenetic
chemogenetic
tools
triggering
release
which
essential
associating
outcomes
during
bioimaging
signaling.Key
words:
live
imaging,
optogenetics,
chemogenetics.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 15, 2025
Abstract
Post-translational
control
enables
rapid
and
precise
regulation
of
cell
behavior.
Despite
these
advantages,
general
strategies
to
build
phosphorylation-based
synthetic
circuits
are
limited.
Here,
we
reasoned
that
engineered
allostery,
a
technique
has
been
applied
design
light-
chemically-gated
protein
switches,
could
also
be
used
engineer
phosphorylation-controlled
switches
(phospho-switches).
Using
an
allosterically
controllable
Gal4
transcription
factor
as
scaffold,
show
classic
kinase
FRET
biosensor
architecture
can
starting
point
for
phospho-switch
design.
We
optimize
all
features
the
develop
ERK-controlled
with
20-fold
phosphorylation-dependent
change
in
transcriptional
output.
Our
switch
outperforms
c-fos
promoter,
ERK-responsive
biosensor,
selectivity
sensitivity.
further
our
generalized
other
input
kinases
controlled
targets.
This
work
provides
platform
new
generation
kinase-responsive
tools
biosensing
biology
applications.
Seminars in Cell and Developmental Biology,
Journal Year:
2025,
Volume and Issue:
172, P. 103620 - 103620
Published: June 3, 2025
Developmental
biology
has
long
drawn
on
dynamical
systems
to
understand
the
diverging
fates
and
emerging
form
of
developing
embryo.
Cell
differentiation
morphogenesis
unfold
in
high-dimensional
gene-expression
spaces
position
spaces.
Yet,
their
stable
reproducible
outcomes
suggest
low-dimensional
geometric
structures-e.g.,
fixed
points,
manifolds,
dynamic
attracting
repelling
structures-that
organize
cell
trajectories
both
This
review
surveys
history
recent
advances
frameworks
for
development.
We
focus
techniques
extracting
organizing
structures
fate
decisions
morphogenetic
movements
from
experiments,
as
well
interconnections.
unifying,
perspective
aids
rationalizing
increasingly
complex
experimental
datasets,
facilitating
principled
dimensionality
reduction
an
integrated
understanding
development,
bridging
typically
distinct
domains.