N6-methyladenosine (m6A) in cancer stem cell: From molecular mechanisms to therapeutic implications DOI Creative Commons
Liming Wang,

Yuanxin Tang

Biomedicine & Pharmacotherapy, Journal Year: 2023, Volume and Issue: 163, P. 114846 - 114846

Published: May 9, 2023

The emergence of drug resistance and metastasis has long been a difficult problem for cancer treatment. Recent studies have shown that stem cell populations are key factors in the regulation aggressiveness, relapse resistance. Cancer (CSC) highly plastic self-renewing, giving them unique metabolic, metastatic, chemotherapy properties. N6-methyladenosine (m6A) is most abundant internal modification mRNA involved variety growth development processes, including RNA transcription, alternative splicing, degradation, translation. It also linked to various cancers. At present, important role m6A tumour progression gradually attracting attention, especially stemness process. Abnormal modifications regulate metastasis, recurrence This paper aims explore regulatory mechanism CSCs clinical therapy, clarify its network, provide theoretical guidance targets improvement therapeutic effects.

Language: Английский

Pancreatic cancer: Advances and challenges DOI Creative Commons
Christopher J. Halbrook, Costas A. Lyssiotis, Marina Pasca di Magliano

et al.

Cell, Journal Year: 2023, Volume and Issue: 186(8), P. 1729 - 1754

Published: April 1, 2023

Pancreatic ductal adenocarcinoma (PDAC) remains one of the deadliest cancers. Significant efforts have largely defined major genetic factors driving PDAC pathogenesis and progression. tumors are characterized by a complex microenvironment that orchestrates metabolic alterations supports milieu interactions among various cell types within this niche. In review, we highlight foundational studies driven our understanding these processes. We further discuss recent technological advances continue to expand complexity. posit clinical translation research endeavors will enhance currently dismal survival rate recalcitrant disease.

Language: Английский

Citations

547

Metastasis DOI Creative Commons

Stefanie Gerstberger,

Qingwen Jiang, Karuna Ganesh

et al.

Cell, Journal Year: 2023, Volume and Issue: 186(8), P. 1564 - 1579

Published: April 1, 2023

Language: Английский

Citations

354

SpatialData: an open and universal data framework for spatial omics DOI Creative Commons
Luca Marconato, Giovanni Palla, Kevin A. Yamauchi

et al.

Nature Methods, Journal Year: 2024, Volume and Issue: unknown

Published: March 20, 2024

Abstract Spatially resolved omics technologies are transforming our understanding of biological tissues. However, the handling uni- and multimodal spatial datasets remains a challenge owing to large data volumes, heterogeneity types lack flexible, spatially aware structures. Here we introduce SpatialData, framework that establishes unified extensible multiplatform file-format, lazy representation larger-than-memory data, transformations alignment common coordinate systems. SpatialData facilitates annotations cross-modal aggregation analysis, utility which is illustrated in context multiple vignettes, including integrative analysis on Xenium Visium breast cancer study.

Language: Английский

Citations

51

Benchmarking spatial clustering methods with spatially resolved transcriptomics data DOI
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin

et al.

Nature Methods, Journal Year: 2024, Volume and Issue: 21(4), P. 712 - 722

Published: March 15, 2024

Language: Английский

Citations

50

A survey of open questions in adaptive therapy: Bridging mathematics and clinical translation DOI Creative Commons
Jeffrey West,

Fred Adler,

Jill Gallaher

et al.

eLife, Journal Year: 2023, Volume and Issue: 12

Published: March 23, 2023

Adaptive therapy is a dynamic cancer treatment protocol that updates (or ‘adapts’) decisions in anticipation of evolving tumor dynamics. This broad term encompasses many possible protocols patient-specific dose modulation or timing. maintains high levels burden to benefit from the competitive suppression treatment-sensitive subpopulations on treatment-resistant subpopulations. evolution-based approach has been integrated into several ongoing planned clinical trials, including metastatic castrate resistant prostate cancer, ovarian and BRAF-mutant melanoma. In previous few decades, experimental investigation adaptive progressed synergistically with mathematical computational modeling. this work, we discuss 11 open questions The are split three sections: (1) integrating appropriate components models (2) design validation dosing protocols, (3) challenges opportunities translation.

Language: Английский

Citations

43

Molecular principles underlying aggressive cancers DOI Creative Commons
Ruth Nussinov, Bengi Ruken Yavuz, Hyunbum Jang

et al.

Signal Transduction and Targeted Therapy, Journal Year: 2025, Volume and Issue: 10(1)

Published: Feb. 16, 2025

Language: Английский

Citations

3

Hybrid EMT Phenotype and Cell Membrane Tension Promote Colorectal Cancer Resistance to Ferroptosis DOI Creative Commons
Xiaowei Wei, Yutong Ge,

Yaolin Zheng

et al.

Advanced Science, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 22, 2025

Abstract Intratumoral heterogeneity, including epithelial–mesenchymal transition (EMT), is one major cause of therapeutic resistance. The induction ferroptosis, an iron‐dependent death, has the potential in overcoming this resistance to traditional treatment modalities. However, roles distinct EMT phenotypes ferroptosis remain enigma. This study reports that 3D soft fibrin microenvironment confers colorectal cancer (CRC) cells hybrid phenotype and high level ferroptosis. activation histone acetylation WNT/β‐catenin signaling drives phenotypic transition, which promotes defense CRCs against via glutathione peroxidases/ferritin axis. Unexpectedly, E‐cadherin knockout but not 2D mediates integrin β 3 marked‐late state further enhances integrin‐mediated tension mitochondrial reprogramming. inhibition α v ‐mediated WNT/β‐catenin‐mediated sensitizes with without deficiency vivo, respectively. Further, patient‐derived tumoroids associated CRC In summary, uncovers previously unappreciated cell membrane only predict efficacy also potentiate development new ferroptosis‐based targeted strategies.

Language: Английский

Citations

2

Principles and challenges of modeling temporal and spatial omics data DOI
Britta Velten, Oliver Stegle

Nature Methods, Journal Year: 2023, Volume and Issue: 20(10), P. 1462 - 1474

Published: Sept. 14, 2023

Language: Английский

Citations

40

Multiplexed, image-based pooled screens in primary cells and tissues with PerturbView DOI
Takamasa Kudo, Ana M. Meireles, Reuben Moncada

et al.

Nature Biotechnology, Journal Year: 2024, Volume and Issue: unknown

Published: Oct. 7, 2024

Language: Английский

Citations

15

Cancer cell states: Lessons from ten years of single-cell RNA-sequencing of human tumors DOI
Itay Tirosh, Mario L. Suvà

Cancer Cell, Journal Year: 2024, Volume and Issue: 42(9), P. 1497 - 1506

Published: Aug. 29, 2024

Language: Английский

Citations

13