Ecological and functional roles of bacteriophages in contrasting environments: marine, terrestrial and human gut DOI Creative Commons
Teagan L. Brown, Oliver J. Charity, Evelien M. Adriaenssens

et al.

Current Opinion in Microbiology, Journal Year: 2022, Volume and Issue: 70, P. 102229 - 102229

Published: Nov. 5, 2022

While they are the most abundant biological entities on planet, role of bacteriophages (phages) in microbiome remains enigmatic and understudied. With a rise number metagenomics studies publication highly efficient phage mining programmes, we now have extensive data genomic taxonomic diversity (mainly) DNA wide range environments. In addition, higher throughput quality sequencing is allowing for strain-level reconstructions genomes from metagenomes. These factors will ultimately help us to understand these phages play as part specific microbial communities, enabling tracking individual virus through space time. Using lessons learned latest metagenomic studies, focus two explicit aspects within microbiome, their ecological structuring bacterial populations, contribution functioning by encoding auxiliary metabolism genes.

Language: Английский

Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan DOI
Joachim Johansen, Koji Atarashi, Yasumichi Arai

et al.

Nature Microbiology, Journal Year: 2023, Volume and Issue: 8(6), P. 1064 - 1078

Published: May 15, 2023

Language: Английский

Citations

54

A metagenomic catalog of the early-life human gut virome DOI Creative Commons

Shuqin Zeng,

Alexandre Almeida, Shiping Li

et al.

Nature Communications, Journal Year: 2024, Volume and Issue: 15(1)

Published: Feb. 29, 2024

Early-life human gut microbiome is a pivotal driver of homeostasis and infant health. However, the viral component (known as "virome") remains mostly unexplored. Here, we establish Early-Life Gut Virome (ELGV), catalog 160,478 non-redundant DNA RNA sequences from 8130 virus-like particles (VLPs) enriched or bulk metagenomes in first three years life. By clustering, 82,141 species are identified, 68.3% which absent existing databases built mainly adults, 64 8 based on VLPs-enriched metagenomes, respectively, exhibit potentials biomarkers to distinguish infants adults. With largest longitudinal population profiled by either metagenomic sequencing, track inherent instability temporal development early-life virome, identify differential viruses associated with multiple clinical factors. The mother-infant shared virome interactions between bacteriome early life further expanded. Together, ELGV provides most comprehensive complete blueprint facilitating discovery pediatric disease-virome associations future.

Language: Английский

Citations

17

Longitudinal phage–bacteria dynamics in the early life gut microbiome DOI Creative Commons
Michael J. Tisza, Richard E. Lloyd, Kristi L. Hoffman

et al.

Nature Microbiology, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 24, 2025

Language: Английский

Citations

3

When separation is not the answer: Breastfeeding mothers and infants affected by COVID‐19 DOI Creative Commons
Cecília Tomori, Karleen Gribble, Aunchalee E. L. Palmquist

et al.

Maternal and Child Nutrition, Journal Year: 2020, Volume and Issue: 16(4)

Published: May 27, 2020

Abstract The World Health Organization (WHO) has provided detailed guidance on the care of infants women who are persons under investigation (PUI) or confirmed to have COVID‐19. supports immediate post‐partum mother–infant contact and breastfeeding with appropriate respiratory precautions. Although many countries followed WHO guidance, others implemented infection prevention control (IPC) policies that impose varying levels separation discourage prohibit provision expressed breast milk. These aim protect from potential harm their mothers, yet they may fail fully account for impact separation. Global COVID‐19 data suggestive potentially lower susceptibility a typically milder course disease among children, although severe in infancy remains. Separation causes cumulative harms, including disrupting limiting its protection against infectious disease, which disproportionate impacts vulnerable infants. also presumes replaceability breastfeeding—a risk is magnified emergencies. Moreover, does not ensure viral exposure during hospitalizations post‐discharge, contributes burden overwhelmed health systems. Finally, magnifies maternal consequences insufficient compounds trauma communities experienced long‐standing inequities violence, family Taken together, separating PUI/confirmed SARS‐CoV‐2‐positive mothers lead excess preventable illnesses deaths around world. services must consider short‐andlong‐term policies.

Language: Английский

Citations

115

Effects of Intestinal Fungi and Viruses on Immune Responses and Inflammatory Bowel Diseases DOI Open Access
Iliyan D. Iliev, Ken Cadwell

Gastroenterology, Journal Year: 2020, Volume and Issue: 160(4), P. 1050 - 1066

Published: Dec. 19, 2020

Language: Английский

Citations

100

Human Milk Microbiota and Oligosaccharides: A Glimpse into Benefits, Diversity, and Correlations DOI Open Access
Carole Ayoub Moubareck

Nutrients, Journal Year: 2021, Volume and Issue: 13(4), P. 1123 - 1123

Published: March 29, 2021

Human milk represents a cornerstone for growth and development of infants, with extensive array benefits. In addition to exceptionally nutritive bioactive components, human encompasses complex community signature bacteria that helps establish infant gut microbiota, contributes maturation immune system, competitively interferes pathogens. Among constituents milk, oligosaccharides (HMOs) are particularly significant. These non-digestible carbohydrates forming the third largest solid component in milk. Valuable effects HMOs include shaping intestinal imparting antimicrobial effects, developing barrier, modulating response. Moreover, recent investigations suggest correlations between links possibly existing environmental factors, genetics, geographical location, other factors. this review, from physiological health implications perspective, benefits newborns mothers highlighted. From microbiological focused insight into including origins, diversity, benefits, effect maternal diet is presented. metabolic biochemical, physiological, genetic significance HMOs, their probable relations addressed. Ongoing research mechanistic processes through which rich biological assets promote development, immunity tackled.

Language: Английский

Citations

99

Bacteriophage-mediated manipulation of the gut microbiome – promises and presents limitations DOI Creative Commons
Torben Sølbeck Rasmussen, Anna Kirstine Koefoed, Rasmus Riemer Jakobsen

et al.

FEMS Microbiology Reviews, Journal Year: 2020, Volume and Issue: 44(4), P. 507 - 521

Published: June 3, 2020

ABSTRACT Gut microbiome (GM) composition and function are linked to human health disease, routes for manipulating the GM have become an area of intense research. Due its high treatment efficacy, use fecal microbiota transplantation (FMT) is generally accepted as a promising experimental patients suffering from imbalances (dysbiosis), e.g. caused by recurrent Clostridioides difficile infections (rCDI). Mounting evidence suggests that bacteriophages (phages) play key role in successful FMT restoring dysbiotic bacterial GM. As refinement FMT, removing component donor feces sterile filtration, also referred virome (FVT), decreases risk invasive bacteria. However, eukaryotic viruses prophage-encoded virulence factors remain safety issue. Recent vivo studies show how cascading effects initiated when phage communities transferred gut FVT, which leads changes composition, host metabolome, improve such alleviating symptoms obesity type-2-diabetes (T2D). In this review, we discuss promises limitations FVT along with perspectives using treat various diseases associated dysbiosis.

Language: Английский

Citations

96

Implications of the COVID-19 Pandemic Response for Breastfeeding, Maternal Caregiving Capacity and Infant Mental Health DOI Creative Commons
Karleen Gribble, Kathleen A. Marinelli, Cecília Tomori

et al.

Journal of Human Lactation, Journal Year: 2020, Volume and Issue: 36(4), P. 591 - 603

Published: Aug. 6, 2020

Language: Английский

Citations

81

Bacteriophages and their potential for treatment of gastrointestinal diseases DOI
Yi Duan, Ry Young, Bernd Schnabl

et al.

Nature Reviews Gastroenterology & Hepatology, Journal Year: 2021, Volume and Issue: 19(2), P. 135 - 144

Published: Nov. 15, 2021

Language: Английский

Citations

80

Individuals at risk for rheumatoid arthritis harbor differential intestinal bacteriophage communities with distinct metabolic potential DOI Creative Commons
Mihnea R. Mangalea, David Páez-Espino, Kristopher Kieft

et al.

Cell Host & Microbe, Journal Year: 2021, Volume and Issue: 29(5), P. 726 - 739.e5

Published: May 1, 2021

Language: Английский

Citations

79