bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Jan. 8, 2023
Abstract
Quantitative
ethology
requires
an
accurate
estimation
of
organism’s
postural
dynamics
in
three
dimensions
plus
time.
Technological
progress
over
the
last
decade
has
made
animal
pose
challenging
scenarios
possible
with
unprecedented
detail.
Here,
we
present
(i)
a
fast
automated
method
to
record
and
track
individual
larval
zebrafish
3-D
environment,
applicable
when
human
labeling
is
not
possible;
(ii)
rich
annotated
dataset
poses
for
ethologists
general
machine
learning
community;
(iii)
technique
generate
realistic,
images
novel
behavioral
contexts.
Using
three-camera
system
calibrated
refraction
correction,
diverse
swims
under
free
swimming
conditions
response
acoustic
optical
stimuli.
We
then
employ
convolutional
neural
network
estimate
from
video
images.
The
trained
against
set
synthetic
rendered
using
physical
model
larvae.
This
samples
distribution
realistic
that
priori
template-based
small
number
swim
bouts.
Our
model,
without
any
annotation,
performs
much
higher
speed
comparable
accuracy
approach,
capturing
detailed
kinematics
swims.
Author
Summary
Larval
been
studied
extensively
2-D
environments,
which
are
restrictive
compared
natural
habitats.
To
enable
rapid
capture
poses,
collect
orthogonal
projections
behaviors
several
settings
fit
model.
use
auto-annotated
stream
train
network.
highly
predictions
on
600
real
bouts
faster
than
fit.
results
show
larvae
frequently
exhibit
motions
inaccessible
setup.
could
be
used
by
studying
dynamics,
community
interested
multi-dimensional
time
series
reconstruction.
ability
render
multiple
our
can
extended
collective
behavior.
PLoS Biology,
Journal Year:
2019,
Volume and Issue:
17(2), P. e3000021 - e3000021
Published: Feb. 7, 2019
The
ability
to
perceive
and
recognise
a
reflected
mirror
image
as
self
(mirror
self-recognition,
MSR)
is
considered
hallmark
of
cognition
across
species.
Although
MSR
has
been
reported
in
mammals
birds,
it
not
known
occur
any
other
major
taxon.
Potentially
limiting
our
test
for
taxa
that
the
established
assay,
mark
test,
requires
animals
display
contingency
testing
self-directed
behaviour.
These
behaviours
may
be
difficult
humans
interpret
taxonomically
divergent
animals,
especially
those
lack
dexterity
(or
limbs)
required
touch
mark.
Here,
we
show
fish,
cleaner
wrasse
Labroides
dimidiatus,
shows
behaviour
reasonably
interpreted
passing
through
all
phases
test:
(i)
social
reactions
towards
reflection,
(ii)
repeated
idiosyncratic
mirror,
(iii)
frequent
observation
their
reflection.
When
subsequently
provided
with
coloured
tag
modified
fish
attempt
remove
by
scraping
body
presence
but
no
response
transparent
marks
or
absence
mirror.
This
remarkable
finding
presents
challenge
interpretation
test—do
accept
these
behavioural
responses,
which
are
taken
evidence
self-recognition
species
during
lead
conclusion
self-aware?
Or
do
rather
decide
patterns
have
basis
cognitive
process
than
pass
test?
If
former,
what
does
this
mean
understanding
animal
intelligence?
latter,
application
metric
abilities?This
Short
Report
received
both
positive
negative
reviews
experts.
Academic
Editor
written
an
accompanying
Primer
publishing
alongside
article
(https://doi.org/10.1371/journal.pbio.3000112).
linked
complementary
expert
perspective;
discusses
how
current
study
should
context
against
self-awareness
wide
range
animals.
PLoS Computational Biology,
Journal Year:
2019,
Volume and Issue:
15(4), P. e1006699 - e1006699
Published: April 8, 2019
We
present
Stytra,
a
flexible,
open-source
software
package,
written
in
Python
and
designed
to
cover
all
the
general
requirements
involved
larval
zebrafish
behavioral
experiments.
It
provides
timed
stimulus
presentation,
interfacing
with
external
devices
simultaneous
real-time
tracking
of
parameters
such
as
position,
orientation,
tail
eye
motion
both
freely-swimming
head-restrained
preparations.
Stytra
logs
recorded
quantities,
metadata,
code
version
standardized
formats
allow
full
provenance
tracking,
from
data
acquisition
through
analysis
publication.
The
package
is
modular
expandable
for
different
experimental
protocols
setups.
Current
releases
can
be
found
at
https://github.com/portugueslab/stytra.
also
provide
complete
documentation
examples
extending
new
stimuli
hardware,
well
schema
parts
list
showcase
by
reproducing
previously
published
larvae.
demonstrate
use
context
calcium
imaging
experiment,
where
it
interfaces
other
devices.
Our
aims
are
enable
more
laboratories
easily
implement
experiments,
platform
sharing
that
permits
easy
reproduction
experiments
straightforward
validation.
Finally,
we
how
serve
design
involving
or
visual
stimulation
animals
an
example
integration
DeepLabCut
neural
network-based
method.
Environmental Science & Technology,
Journal Year:
2022,
Volume and Issue:
56(18), P. 13264 - 13273
Published: Sept. 9, 2022
Azoles
that
are
used
in
pesticides,
pharmaceuticals,
and
personal
care
products
can
have
toxic
effects
on
fish.
However,
there
is
no
information
regarding
azole-induced
visual
disorder
associated
with
thyroid
disruption.
We
evaluated
changes
retinal
morphology,
optokinetic
response,
transcript
abundance
of
the
genes
involved
color
perception
hypothalamic–pituitary–thyroid
(HPT)
axis,
hormone
(TH)
levels
zebrafish
larvae
exposed
to
common
azoles,
such
as
climbazole
(CBZ,
0.1
10
μg/L)
triadimefon
(TDF,
50
500
μg/L),
at
environmentally
relevant
predicted
worst-case
environmental
concentrations.
Subsequently,
effect
azoles
TH-dependent
GH3
cell
proliferation
receptor
(TR)-regulated
transcriptional
activity,
well
silico
binding
affinity
between
TR
isoforms,
was
investigated.
Azole
exposure
decreased
densities
ganglion
layer,
inner
nuclear
photoreceptor
layer.
Zebrafish
concentrations
CBZ
TDF
showed
a
decrease
response
green–white
red–white
stripes
but
not
blue–white
stripes,
consistent
disturbance
corresponding
opsin
gene
expression.
also
reduced
triiodothyronine
concomitantly
increased
HPT-related
Molecular
docking
analysis
combined
vitro
TR-mediated
transactivation
dual-luciferase
reporter
assays
demonstrated
exhibited
antagonism.
These
results
comparable
those
obtained
from
known
antagonist,
namely,
antagonist
1,
positive
control.
Therefore,
damage
specific
by
appears
result
lowered
TH
signaling,
indicating
potential
threat
disruptors
function
Frontiers in Veterinary Science,
Journal Year:
2022,
Volume and Issue:
9
Published: March 28, 2022
Tricaine,
or
MS-222,
is
the
most
commonly
used
chemical
anesthetic
in
zebrafish
research.
It
thought
to
act
via
blocking
voltage-gated
sodium
channels,
though
its
mechanism
of
action,
particularly
at
neuronal
level,
not
yet
fully
understood.
Here,
we
first
characterized
effects
tricaine
on
both
body
balance
and
touch
responses
freely
swimming
animals,
before
determining
effect
neural
activity
underlying
optokinetic
response
level
motion
perception,
sensorimotor
signaling
generation
behavior
immobilized
animals.
We
found
that
standard
dose
for
larvae
(168
mg/L)
induced
loss
righting
reflex
within
30
seconds,
which
then
recovered
3
minutes.
Optokinetic
15
Calcium
imaging
showed
interferes
with
by
interruption
signals
between
pretectum
hindbrain.
The
sensitivity
indices
identified
sensory
neurons
were
unchanged
exposed
tricaine,
fewer
such
detected,
leaving
a
small
population
active
neurons.
compared
gradual
cooling,
potential
non-chemical
alternative
method
anesthesia.
While
tuning
appeared
be
affected
similar
manner
during
cooling
surge
calcium
levels
This
surge,
alongside
drop
heartrate,
potentially
associated
harmful
changes
physiology
suggests
better
agent
than
laboratory
Environmental Science & Technology,
Journal Year:
2022,
Volume and Issue:
56(9), P. 5673 - 5683
Published: April 12, 2022
Proper
visual
function
is
essential
for
collecting
environmental
information
and
supporting
the
decision-making
in
central
nervous
system
therefore
tightly
associated
with
wildlife
survival
human
health.
Polybrominated
diphenyl
ethers
(PBDEs)
were
reported
to
impair
zebrafish
vision
development,
thyroid
hormone
(TH)
signaling
was
suspected
as
main
contributor.
In
this
study,
a
pentabrominated
PBDE,
BDE-99,
chosen
further
explore
action
mechanism
of
PBDEs
on
disruption
color
vision.
The
results
showed
that
BDE-99
could
multiple
photoreceptors
retina
disturb
behavior
guided
by
larvae
at
120
h
post-fertilization.
Although
resulting
alteration
photoreceptor
patterning
highly
resembled
effects
3,3′,5-triiodo-l-thyroine,
introducing
antagonist
TH
receptors
unable
fully
recover
alteration,
which
suggested
involvement
other
potential
regulatory
factors.
By
modulating
expression
six7,
key
inducer
middle-wavelength
opsins,
we
demonstrated
not
THs,
dominated
BDE-99.
Our
work
promoted
understanding
role
six7
process
proposed
novel
toxicity
PBDEs.
Environmental Health,
Journal Year:
2021,
Volume and Issue:
20(1)
Published: June 25, 2021
Abstract
Background
There
is
a
growing
literature
from
both
epidemiologic
and
experimental
animal
studies
suggesting
that
exposure
to
air
pollution
can
lead
neurodevelopmental
neuropsychiatric
disorders.
Here,
we
suggest
effects
of
pollutant
on
the
brain
may
be
even
broader,
with
potential
affect
social
decision-making
in
general.
Methods
We
discuss
how
neurobiological
substrates
behavior
are
vulnerable
pollution,
then
briefly
present
examine
behavior-related
outcomes.
Results
Few
have
investigated
those
focus
standard
laboratory
tests
rodent
model
systems.
Nonetheless,
there
sufficient
evidence
support
critical
need
for
more
research.
Conclusion
For
future
research,
comparative
approach
utilizes
diverse
systems
probe
wider
range
behaviors,
regions,
neurochemical
pathways.
Personality Neuroscience,
Journal Year:
2024,
Volume and Issue:
7
Published: Jan. 1, 2024
Abstract
Like
other
animals,
fish
have
unique
personalities
that
can
affect
their
cognition
and
responses
to
environmental
stressors.
These
individual
personality
differences
are
often
referred
as
“behavioural
syndromes”
or
“stress
coping
styles”
include
traits
such
boldness,
shyness,
aggression,
exploration,
locomotor
activity,
sociability.
For
example,
bolder
proactive
may
be
more
likely
take
risks
present
lower
hypothalamo–pituitary–adrenal/interrenal
axis
reactivity
compared
shy
reactive
individuals.
Likewise,
learning
memory
differ
between
personalities.
Reactive
individuals
tend
faster
better
association
recall
with
aversive
stimuli,
while
bold
learn
quickly
when
presented
appetitive
incentives.
However,
the
influence
of
on
cognitive
processes
than
achievement
in
has
been
scarcely
explored.
Cognitive
bias
tests
employed
investigate
interplay
emotion
both
humans
animals.
Fish
(CBP)
which
fish’s
interpretation
stimuli
could
influenced
by
its
current
emotional
state
open
modulation.
no
study
explored
whether
CBP,
like
species,
interpreted
long-lasting
characteristics
explain
variation.
We
hold
perspective
CBP
serve
a
vulnerability
factor
for
onset,
persistence,
recurrence
stress-related
disorders.
Therefore,
studying
trait
interactions
variations
valuable
future
efforts
enhance
our
understanding
anxiety
stress
neurobiology
animal
models
humans.
Many
animals
have
large
visual
fields,
and
sensory
circuits
may
sample
those
regions
of
space
most
relevant
to
behaviours
such
as
gaze
stabilisation
hunting.
Despite
this,
relatively
small
displays
are
often
used
in
vision
neuroscience.
To
stimulus
locations
across
the
field,
we
built
a
spherical
arena
with
14,848
independently
controllable
LEDs.
We
measured
optokinetic
response
gain
immobilised
zebrafish
larvae
stimuli
different
steradian
size
field
locations.
find
that
two
eyes
less
yoked
than
previously
thought
spatial
frequency
tuning
is
similar
positions.
However,
react
strongly
lateral,
nearly
equatorial
stimuli,
consistent
reported
densities
red,
green,
blue
photoreceptors.
Upside-down
experiments
suggest
further
extra-retinal
processing.
Our
results
demonstrate
motion
anisotropic,
preferentially
monitor
areas
putative
behavioural
relevance.
BMC Biology,
Journal Year:
2019,
Volume and Issue:
17(1)
Published: Dec. 1, 2019
The
oculomotor
integrator
(OI)
in
the
vertebrate
hindbrain
transforms
eye
velocity
input
into
persistent
position
coding
output,
which
plays
a
crucial
role
retinal
image
stability.
For
mechanistic
understanding
of
function
and
control,
knowledge
about
tuning
OI
other
nuclei
is
needed.
Zebrafish
are
increasingly
used
to
study
sensorimotor
circuits,
yet
precise
neuronal
motor
variables
remains
uncharacterized.Here,
we
recorded
cellular
calcium
signals
while
evoking
monocular
binocular
optokinetic
movements
at
different
slow-phase
velocities.
Our
analysis
reveals
anatomical
distributions
motoneurons
internuclear
neurons
nucleus
abducens
as
well
those
caudally
adjacent
volumes.
Each
neuron
tuned
and/or
variable
extents
only
activated
after
surpassing
particular
thresholds.
While
(rhombomeres
5/6)
mainly
codes
for
position,
rhombomeres
7/8,
velocity-to-position
gradient
exists
along
rostro-caudal
axis,
likely
corresponds
structures
storing
agreement
with
feedforward
mechanism
activity
generation.
Position
encoding
recruited
thresholds
distributed
across
behaviourally
relevant
dynamic
range,
velocity-encoding
have
more
centred
firing
velocity.
In
abducens,
exclusively
one
intermingle
both
eyes.
Many
these
preferentially
active
during
conjugate
less
movements.
This
differential
recruitment
versus
tasks
represents
functional
diversification
final
common
pathway.We
localized
functionally
characterized
repertoire
zebrafish
hindbrain.
findings
provide
evidence
mixed
but
task-specific
code
suggest
that
generation
organized
axis