bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: March 12, 2023
Abstract
In
many
brain
areas,
neuronal
activity
is
associated
with
a
variety
of
behavioral
and
environmental
variables.
particular,
responses
in
the
zebrafish
hindbrain
relate
to
oculomotor
swimming
variables,
as
well
sensory
information.
However,
precise
functional
organization
neurons
has
been
difficult
unravel
since
are
heterogeneous.
Here
we
used
dimensionality
reduction
methods
on
population
data
reveal
role
visually-driven
behavior
swimming.
We
imaged
expressing
GCaMP6s
nucleus
almost
all
neurons,
while
monitoring
response
gratings
that
rotated
different
speeds.
then
reduced-rank
regression,
method
condenses
motor
variables
into
smaller
number
‘features’,
predict
fluorescence
traces
ROIs
(regions
interest).
Despite
potential
complexity
visuo-motor
transformation,
our
analysis
revealed
bulk
can
be
explained
by
only
two
features.
Based
contribution
these
features
each
ROI’s
activity,
formed
three
clusters.
One
cluster
was
related
vergent
movements
swimming,
whereas
other
clusters
leftward
rightward
rotation.
Voxels
corresponding
were
segregated
anatomically,
rotation
located
selectively
left
right
hemispheres,
respectively.
Just
described
cortical
single
neuron
co-exists
simpler
population-level
description,
thereby
providing
insights
transformations
hindbrain.
Current Biology,
Journal Year:
2021,
Volume and Issue:
31(11), P. R741 - R762
Published: June 1, 2021
The
superior
colliculus,
or
tectum
in
the
case
of
non-mammalian
vertebrates,
is
a
part
brain
that
registers
events
surrounding
space,
often
through
vision
and
hearing,
but
also
electrosensation,
infrared
detection,
other
sensory
modalities
diverse
vertebrate
lineages.
This
information
used
to
form
maps
space
positions
different
salient
stimuli
relation
individual.
are
arranged
layers
with
visual
input
uppermost
layer,
senses
deeper
positions,
spatially
aligned
motor
map
deepest
layer.
Here,
we
will
review
organization
intrinsic
function
tectum/superior
colliculus
processed
within
tectal
circuits.
We
discuss
tectal/superior
outputs
conveyed
directly
downstream
circuits
via
thalamus
cortical
areas
control
various
aspects
behavior.
evolutionarily
conserved
among
all
tailored
specialties
each
lineage,
its
roles
have
shifted
emergence
cerebral
cortex
mammals.
illustrate
both
divergent
properties
evolution
by
comparing
processing
lampreys
belonging
oldest
group
extant
larval
zebrafish,
rodents,
vertebrates
including
primates.
Nature Methods,
Journal Year:
2022,
Volume and Issue:
19(11), P. 1357 - 1366
Published: Oct. 24, 2022
Abstract
Dense
reconstruction
of
synaptic
connectivity
requires
high-resolution
electron
microscopy
images
entire
brains
and
tools
to
efficiently
trace
neuronal
wires
across
the
volume.
To
generate
such
a
resource,
we
sectioned
imaged
larval
zebrafish
brain
by
serial
block-face
at
voxel
size
14
×
25
nm
3
.
We
segmented
resulting
dataset
with
flood-filling
network
algorithm,
automated
detection
chemical
synapses
validated
results
comparisons
transmission
microscopic
light-microscopic
reconstructions.
Neurons
their
connections
are
stored
in
form
queryable
expandable
digital
address
book.
reconstructed
208
neurons
involved
visual
motion
processing,
most
them
located
pretectum,
which
had
been
functionally
characterized
same
specimen
two-photon
calcium
imaging.
Moreover,
mapped
all
407
presynaptic
postsynaptic
partners
two
superficial
interneurons
tectum.
The
resource
developed
here
serves
as
foundation
for
synaptic-resolution
circuit
analyses
nervous
system.
Annual Review of Vision Science,
Journal Year:
2021,
Volume and Issue:
7(1), P. 389 - 415
Published: July 20, 2021
Most
animals
have
at
least
some
binocular
overlap,
i.e.,
a
region
of
space
that
is
viewed
by
both
eyes.
This
reduces
the
overall
visual
field
and
raises
problem
combining
two
views
world,
seen
from
different
vantage
points,
into
coherent
whole.
However,
vision
also
offers
many
potential
advantages,
including
increased
ability
to
see
around
obstacles
contrast
sensitivity.
One
particularly
interesting
use
for
comparing
information
eyes
derive
about
depth.
There
are
ways
in
which
this
might
be
done,
but
review,
I
refer
them
all
under
general
heading
stereopsis.
review
examines
possible
uses
stereopsis
compares
what
currently
known
neural
basis
taxa.
Studying
helps
us
break
free
preconceptions
stemming
way
operates
human
provides
new
insights
forms
Frontiers in Neural Circuits,
Journal Year:
2023,
Volume and Issue:
17
Published: Feb. 1, 2023
A
key
challenge
for
neural
systems
is
to
extract
relevant
information
from
the
environment
and
make
appropriate
behavioral
responses.
The
larval
zebrafish
offers
an
exciting
opportunity
studying
these
sensing
processes
sensory-motor
transformations.
Prey
hunting
instinctual
behavior
of
that
requires
brain
combine
different
attributes
sensory
input
form
motor
outputs.
Due
its
small
size
transparency
allows
optical
recording
whole-brain
activity
reveal
mechanisms
involved
in
prey
capture.
In
this
review
we
discuss
how
visual
identify
locate
prey,
circuits
governing
generation
commands
response
can
be
modulated
by
internal
states
experience,
some
outstanding
questions
field.
Nature Neuroscience,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Nov. 22, 2024
A
long-standing
goal
in
neuroscience
is
to
understand
how
a
circuit's
form
influences
its
function.
Here,
we
reconstruct
and
analyze
synaptic
wiring
diagram
of
the
larval
zebrafish
brainstem
predict
key
functional
properties
validate
them
through
comparison
with
physiological
data.
We
identify
modules
strongly
connected
neurons
that
turn
out
be
specialized
for
different
behavioral
functions,
control
eye
body
movements.
The
movement
module
further
organized
into
two
three-block
cycles
support
positive
feedback
long
hypothesized
underlie
low-dimensional
attractor
dynamics
oculomotor
control.
construct
neural
network
model
based
directly
on
reconstructed
makes
predictions
cellular-resolution
coding
position
dynamics.
These
are
verified
statistically
calcium
imaging-based
activity
recordings.
This
work
demonstrates
connectome-based
brain
modeling
can
reveal
previously
unknown
anatomical
structure
circuit
provide
insights
linking
authors
determine
vertebrate
behaviorally
associated
modules.
this
connectome
predicts
imaging
Annual Review of Neuroscience,
Journal Year:
2021,
Volume and Issue:
44(1), P. 275 - 293
Published: March 17, 2021
The
dense
reconstruction
of
neuronal
wiring
diagrams
from
volumetric
electron
microscopy
data
has
the
potential
to
generate
fundamentally
new
insights
into
mechanisms
information
processing
and
storage
in
circuits.
Zebrafish
provide
unique
opportunities
for
dynamical
connectomics
approaches
that
combine
reconstructions
with
measurements
population
activity
behavior.
Such
have
power
reveal
higher-order
structure
cannot
be
detected
by
sparse
sampling
connectivity
is
essential
computations.
In
brain
stem,
recurrently
connected
modules
were
identified
can
account
slow,
low-dimensional
dynamics
an
integrator
circuit.
spinal
cord,
specifies
functional
differences
between
premotor
interneurons.
olfactory
bulb,
tuning-dependent
implements
a
whitening
transformation
based
on
selective
suppression
responses
overrepresented
stimulus
features.
These
findings
illustrate
zebrafish
analyze
circuit
underlying
Frontiers in Veterinary Science,
Journal Year:
2022,
Volume and Issue:
9
Published: March 28, 2022
Tricaine,
or
MS-222,
is
the
most
commonly
used
chemical
anesthetic
in
zebrafish
research.
It
thought
to
act
via
blocking
voltage-gated
sodium
channels,
though
its
mechanism
of
action,
particularly
at
neuronal
level,
not
yet
fully
understood.
Here,
we
first
characterized
effects
tricaine
on
both
body
balance
and
touch
responses
freely
swimming
animals,
before
determining
effect
neural
activity
underlying
optokinetic
response
level
motion
perception,
sensorimotor
signaling
generation
behavior
immobilized
animals.
We
found
that
standard
dose
for
larvae
(168
mg/L)
induced
loss
righting
reflex
within
30
seconds,
which
then
recovered
3
minutes.
Optokinetic
15
Calcium
imaging
showed
interferes
with
by
interruption
signals
between
pretectum
hindbrain.
The
sensitivity
indices
identified
sensory
neurons
were
unchanged
exposed
tricaine,
fewer
such
detected,
leaving
a
small
population
active
neurons.
compared
gradual
cooling,
potential
non-chemical
alternative
method
anesthesia.
While
tuning
appeared
be
affected
similar
manner
during
cooling
surge
calcium
levels
This
surge,
alongside
drop
heartrate,
potentially
associated
harmful
changes
physiology
suggests
better
agent
than
laboratory
Oxford Open Neuroscience,
Journal Year:
2022,
Volume and Issue:
2
Published: Dec. 9, 2022
Abstract
Extensive
phylogenetic
conservation
of
molecular
pathways
and
neuroanatomical
structures,
associated
with
efficient
methods
for
genetic
modification,
have
been
exploited
increasingly
to
generate
zebrafish
models
human
disease.
A
range
powerful
approaches
can
be
deployed
analyze
these
the
ultimate
goal
elucidating
pathogenic
mechanisms
accelerating
efforts
find
effective
treatments.
Unbiased
neurobehavioral
assays
provide
readouts
that
parallel
clinical
abnormalities
found
in
patients,
although
some
most
useful
quantify
responses
are
not
routinely
evaluated
clinically,
differences
between
brains
preclude
expression
full
seen
Imaging
use
fluorescent
reporters
standardized
brain
atlases
coupled
quantitative
measurements
structure
offer
an
unbiased
means
link
experimental
manipulations
changes
neural
architecture.
Together,
structural
functional
analyses
allow
dissection
cellular
physiological
basis
underlying
neurological
phenotypes.
These
used
as
outputs
chemical
modifier
screens,
which
a
major
opportunity
exploit
identify
small
molecule
modulators
pathophysiology
may
informative
understanding
disease
possible
therapeutic
approaches.
Nature Communications,
Journal Year:
2021,
Volume and Issue:
12(1)
Published: July 6, 2021
Organisms
have
the
capacity
to
make
decisions
based
solely
on
internal
drives.
However,
it
is
unclear
how
neural
circuits
form
in
absence
of
sensory
stimuli.
Here
we
provide
a
comprehensive
map
activity
patterns
underlying
generation
saccades
made
visual
We
perform
calcium
imaging
larval
zebrafish
discover
range
responses
surrounding
spontaneous
saccades,
from
cells
that
display
tonic
discharge
only
during
fixations
neurons
whose
rises
advance
by
multiple
seconds.
When
lesion
these
populations
find
ablation
with
pre-saccadic
rise
delays
saccade
initiation.
analyze
initiation
using
ramp-to-threshold
model
and
are
able
predict
times
upcoming
activity.
These
findings
suggest
ramping
neuronal
bound
critical
component
self-initiated
saccadic
movements.