FEMS Microbiology Reviews,
Journal Year:
2016,
Volume and Issue:
40(3), P. 373 - 397
Published: Feb. 18, 2016
Biofilms
are
a
major
form
of
microbial
life
in
which
cells
dense
surface
associated
communities
that
can
persist
for
many
generations.
The
long-life
biofilm
means
they
be
strongly
shaped
by
evolutionary
processes.
Here,
we
review
the
experimental
study
evolution
communities.
We
first
provide
an
overview
different
models
used
to
and
their
advantages
disadvantages.
then
illustrate
vast
amount
diversification
observed
during
evolution,
discuss
(i)
potential
ecological
processes
behind
diversification,
(ii)
recent
insights
into
genetics
adaptive
(iii)
striking
degree
parallelism
between
experiments
real-life
biofilms
(iv)
consequences
diversification.
In
second
part,
provided
how
growth
structure
promote
cooperative
phenotypes.
Overall,
our
analysis
points
important
role
cooperation
bacterial
survival
productivity.
Deeper
understanding
both
is
key
importance
design
improved
antimicrobial
strategies
diagnostic
techniques.
Proceedings of the National Academy of Sciences,
Journal Year:
2025,
Volume and Issue:
122(2)
Published: Jan. 9, 2025
The
bacterial
type
6
secretion
system
(T6SS)
is
a
toxin-injecting
nanoweapon
that
mediates
competition
in
plant-
and
animal-associated
microbial
communities.
Bacteria
can
evolve
de
novo
resistance
against
T6SS
attacks,
but
far
from
universal
natural
communities,
suggesting
key
features
of
weaponry
may
act
to
limit
its
evolution.
Here,
we
combine
ecoevolutionary
modeling
experimental
evolution
examine
how
toxin
multiplicity
Acinetobacter
baylyi
attackers
shape
susceptible
Escherichia
coli
competitors.
In
both
our
models
experiments,
find
combinations
multiple
distinct
toxins
by
creating
genetic
bottlenecks,
driving
resistant
lineages
extinct
before
they
reach
high
frequency.
We
also
show
that,
paradoxically,
single-toxin
drive
the
cross-resistance,
protecting
bacteria
unfamiliar
combinations,
even
though
such
evolutionary
pathways
were
inaccessible
multitoxin
attackers.
Our
findings
indicate
comparable
antimicrobial
anticancer
combination
therapies,
arsenals
function
competing
microbes.
This
helps
us
understand
why
T6SSs
remain
widespread
effective
weapons
many
T6SS-armed
encode
functionally
diverse
anticompetitor
toxins.
Nature Communications,
Journal Year:
2017,
Volume and Issue:
8(1)
Published: Feb. 6, 2017
Abstract
By
nature
of
their
small
size,
dense
growth
and
frequent
need
for
extracellular
metabolism,
microbes
face
persistent
public
goods
dilemmas.
Genetic
assortment
is
the
only
general
solution
stabilizing
cooperation,
but
all
known
mechanisms
structuring
microbial
populations
depend
on
availability
free
space,
an
often
unrealistic
constraint.
Here
we
describe
a
class
self-organization
that
operates
within
densely
packed
bacterial
populations.
Through
mathematical
modelling
experiments
with
Vibrio
cholerae,
show
how
killing
adjacent
competitors
via
Type
VI
secretion
system
(T6SS)
precipitates
phase
separation
‘Model
A’
universality
order-disorder
transition
mediated
by
killing.
We
mathematically
demonstrate
T6SS-mediated
should
favour
evolution
empirically
support
this
prediction
using
phylogenetic
comparative
analysis.
This
work
illustrates
twin
role
played
T6SS,
dealing
death
to
local
while
simultaneously
creating
conditions
potentially
favouring
cooperation
kin.
Evolution,
Journal Year:
2017,
Volume and Issue:
71(6), P. 1443 - 1455
Published: March 22, 2017
Microbes
have
the
potential
to
be
highly
cooperative
organisms.
The
archetype
of
microbial
cooperation
is
often
considered
secretion
siderophores,
molecules
scavenging
iron,
where
threatened
by
"cheater"
genotypes
that
use
siderophores
without
making
them.
Here,
we
show
this
view
neglects
a
key
piece
biology:
are
imported
specific
receptors
constrain
their
competing
strains.
We
study
effect
specificity
in
an
ecoevolutionary
model,
which
vary
siderophore
sharing
among
strains,
and
compare
fully
shared
with
private
siderophores.
privatizing
fundamentally
alters
evolution.
Rather
than
canonical
good,
become
competitive
trait
used
pillage
iron
from
other
also
physiological
regulation
using
silico
long-term
Although
evolve
downregulated
presence
competitor,
as
expected
for
trait,
privatized
upregulated.
evaluate
these
predictions
published
experimental
work,
suggests
some
upregulated
response
competition
akin
traits
like
antibiotics.
can
act
good
single
genotypes,
argue
role
fundamental
understanding
biology.
FEMS Microbiology Reviews,
Journal Year:
2016,
Volume and Issue:
40(3), P. 373 - 397
Published: Feb. 18, 2016
Biofilms
are
a
major
form
of
microbial
life
in
which
cells
dense
surface
associated
communities
that
can
persist
for
many
generations.
The
long-life
biofilm
means
they
be
strongly
shaped
by
evolutionary
processes.
Here,
we
review
the
experimental
study
evolution
communities.
We
first
provide
an
overview
different
models
used
to
and
their
advantages
disadvantages.
then
illustrate
vast
amount
diversification
observed
during
evolution,
discuss
(i)
potential
ecological
processes
behind
diversification,
(ii)
recent
insights
into
genetics
adaptive
(iii)
striking
degree
parallelism
between
experiments
real-life
biofilms
(iv)
consequences
diversification.
In
second
part,
provided
how
growth
structure
promote
cooperative
phenotypes.
Overall,
our
analysis
points
important
role
cooperation
bacterial
survival
productivity.
Deeper
understanding
both
is
key
importance
design
improved
antimicrobial
strategies
diagnostic
techniques.