bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Nov. 20, 2023
Abstract
Apoptosis,
a
major
form
of
programmed
cell
death,
is
an
essential
component
host
defense
against
invading
intracellular
pathogens.
Viruses
encode
inhibitors
apoptosis
to
evade
responses
during
infection,
and
support
their
own
replication
survival.
Therefore,
hosts
viruses
are
entangled
in
constant
evolutionary
arms
race
control
apoptosis.
Until
now,
the
context
antiviral
immune
system
has
been
almost
exclusively
studied
vertebrates.
This
limited
phyletic
sampling
makes
it
impossible
determine
whether
similar
mechanism
existed
last
common
ancestor
animals.
Here,
we
established
assays
probe
sea
anemone
Nematostella
vectensis
,
model
species
Cnidaria,
phylum
that
diverged
approximately
600
million
years
ago
from
rest
We
show
polyinosinic:polycytidylic
acid
(poly
I:C),
synthetic
long
double-stranded
RNA
mimicking
viral
primary
ligand
for
vertebrate
RLR
melanoma
differentiation-associated
protein
5
(MDA5),
sufficient
induce
N.
.
Furthermore,
at
transcriptomic
level,
related
genes
significantly
enriched
upon
poly(I:C)
exposure
as
well
bilaterian
invertebrates.
Our
phylogenetic
analysis
caspase
family
reveals
conservation
all
four
involved
mammals
revealed
cnidarian-specific
gene
which
was
strongly
upregulated.
Altogether,
our
findings
suggest
response
challenge
functionally
conserved
can
be
traced
back
Bilateria
Cnidaria.
Frontiers in Zoology,
Journal Year:
2024,
Volume and Issue:
21(1)
Published: March 18, 2024
Abstract
Background
The
recent
combination
of
genomics
and
single
cell
transcriptomics
has
allowed
to
assess
a
variety
non-conventional
model
organisms
in
much
more
depth.
Single
transcriptomes
can
uncover
hidden
cellular
complexity
lineage
relationships
within
organisms.
developmental
atlases
the
sea
anemone
Nematostella
vectensis
,
representative
basally
branching
Cnidaria,
provided
new
insights
into
development
all
types
(Steger
et
al
Cell
Rep
40(12):111370,
2022;
Sebé-Pedrós
al.
173(6):1520–1534.e20).
However,
mapping
reads
still
suffers
from
relatively
poor
gene
annotations
draft
genome
consisting
many
scaffolds.
Results
Here
we
present
wildtype
resource
atlas,
by
re-mapping
sequence
data
first
published
Steger
(2022)
Cole
(Nat
Commun
14(1):1747,
2023),
chromosome-level
assembly
corresponding
models
Zimmermann
14,
8270
(2023).
https://doi.org/10.1038/s41467-023-44080-7
).
We
expand
pre-existing
dataset
through
incorporation
additional
derived
capture
sequencing
suspensions
four
samples:
24
h
gastrula,
2d
planula,
an
inter-parietal
region
bodywall
young
unsexed
animal,
another
adult
mesentery
mature
male
animal.
Conclusion
Our
analyses
full
cell-state
inventory
provide
transcriptomic
signatures
for
127
distinct
states,
which
47
correspond
neuroglandular
subtypes.
also
identify
two
putatively
immune-related
profiles
that
segregate
between
inner
outer
layers.
Furthermore,
annotation
Nv2
markedly
improved
on
transcriptome
will
therefore
be
great
value
community
anyone
using
dataset.
Molecular Biology and Evolution,
Journal Year:
2024,
Volume and Issue:
41(3)
Published: Feb. 20, 2024
Viruses
represent
a
major
threat
to
all
animals,
which
defend
themselves
through
induction
of
large
set
virus-stimulated
genes
that
collectively
control
the
infection.
In
vertebrates,
these
include
interferons
play
critical
role
in
amplification
response
Virus-
and
interferon-stimulated
restriction
factors
targeting
different
steps
viral
replication
cycle,
addition
molecules
associated
with
inflammation
adaptive
immunity.
Predictably,
antiviral
evolve
dynamically
pressure.
As
result,
each
animal
has
unique
arsenal
genes.
Here,
we
exploit
capacity
experimentally
activate
evolutionarily
conserved
stimulator
IFN
(STING)
signaling
pathway
by
injection
cyclic
dinucleotide
2'3'-cyclic
guanosine
monophosphate-adenosine
monophosphate
into
flies
define
repertoire
STING-regulated
10
Drosophila
species,
spanning
40
million
years
evolution.
Our
data
reveal
factors,
including
STING
itself,
cGAS-like-receptor,
factor
pastel,
protein
Vago,
but
also
2
key
components
RNA
interference
pathway,
Dicer-2,
Argonaute2.
addition,
identify
unknown
species-
or
lineage-specific
have
not
been
previously
resistance
viruses.
provide
insight
core
pave
way
for
characterization
effectors.
Proceedings of the National Academy of Sciences,
Journal Year:
2021,
Volume and Issue:
118(51)
Published: Dec. 13, 2021
Significance
Cyclic
dinucleotides
are
signaling
molecules
that
originated
in
bacteria
and
were
subsequently
acquired
co-opted
by
animals
for
immune
signaling.
The
major
cyclic
dinucleotide
pathway
mammals
results
the
production
of
antiviral
called
interferons.
Invertebrates
such
as
sea
anemones
lack
interferons,
thus
it
was
unclear
whether
would
play
a
role
immunity
these
animals.
Here,
we
report
anemone
Nematostella
vectensis
,
activate
both
antibacterial
responses
do
so
through
conserved
pathway.
These
provide
insights
into
evolutionary
origins
innate
suggest
broader
ancestral
evolved
toward
more
specialized
functions
mammals.
While
the
biogenesis
of
microRNAs
(miRNAs)
in
both
animals
and
plants
depends
on
RNase
III
Dicer,
its
partner
proteins
are
considered
distinct
for
each
kingdom.
Nevertheless,
recent
discovery
homologs
Hyponastic
Leaves1
(HYL1),
a
‘plant-specific’
Dicer
partner,
metazoan
phylum
Cnidaria,
challenges
view
that
miRNAs
evolved
convergently
plants.
Here,
we
show
HYL1
homolog
Hyl1-like
(Hyl1La)
is
crucial
development
miRNA
cnidarian
model
Nematostella
vectensis
.
Inhibition
Hyl1La
by
morpholinos
resulted
metamorphosis
arrest
embryos
significant
reduction
levels
most
miRNAs.
Further,
meta-analysis
morphants
components,
like
Dicer1,
shows
clustering
their
profiles
with
morphants.
Strikingly,
immunoprecipitation
followed
quantitative
PCR
revealed
contrast
to
plant
HYL1,
interacts
only
precursor
not
primary
This
was
complemented
an
vitro
binding
assay
synthetic
miRNA.
Altogether,
these
results
suggest
last
common
ancestor
carried
took
essential
part
indicate
early
emergence
system
before
separated.
Science Advances,
Journal Year:
2024,
Volume and Issue:
10(11)
Published: March 13, 2024
The
ability
of
an
animal
to
effectively
capture
prey
and
defend
against
predators
is
pivotal
for
survival.
Venom
often
a
mixture
many
components
including
toxin
proteins
that
shape
predator-prey
interactions.
Here,
we
used
the
sea
anemone
Molecular Biology and Evolution,
Journal Year:
2024,
Volume and Issue:
41(5)
Published: April 26, 2024
Abstract
Gene
duplication
is
a
major
force
driving
evolutionary
innovation.
A
classic
example
generating
new
animal
toxins
via
of
physiological
protein-encoding
genes
and
recruitment
into
venom.
While
this
process
drives
the
innovation
many
venoms,
reverse
nonvenomous
cells
remains
unresolved.
Using
comparative
genomics,
we
find
members
Membrane
Attack
Complex
Perforin
Family
(MAC)
have
been
recruited
venom-injecting
(cnidocytes),
in
soft
stony
corals
sea
anemones,
suggesting
that
ancestral
MAC
was
cnidocyte
expressed
toxin.
Further
investigation
model
anemone
Nematostella
vectensis
reveals
three
undergone
Nematostella-specific
duplications
leading
to
their
endomesodermal
cells.
Furthermore,
simultaneous
knockdown
all
endomesodermally
MACs
leads
mis-development,
supporting
these
paralogs
function.
By
resolving
history
function
Nematostella,
provide
first
proof
for
from
venom
organismal
development.
Cell Reports,
Journal Year:
2024,
Volume and Issue:
43(9), P. 114678 - 114678
Published: Aug. 27, 2024
Viruses
pose
a
significant
threat
to
cellular
organisms.Innate
antiviral
immunity
encompasses
both
RNA-and
protein-based
mechanisms
designed
sense
and
respond
infections,
fundamental
aspect
present
in
all
living
organisms.A
potent
RNA-based
mechanism
is
RNA
interference,
where
small
RNA-programmed
nucleases
target
viral
RNAs.Protein-based
often
rely
on
the
induction
of
transcriptional
responses
triggered
by
recognition
infections
through
innate
immune
receptors.These
involve
upregulation
genes
aimed
at
countering
infections.In
this
review,
we
delve
into
recent
advances
understanding
diversification
animals.An
evolutionary
perspective
gains
losses
diverse
animals
coupled
mechanistic
studies
model
organisms
such
as
fruit
fly
Drosophila
melanogaster
essential
provide
deep
that
can
be
translated
new
strategies
treatment
diseases.