
Research Square (Research Square), Journal Year: 2021, Volume and Issue: unknown
Published: April 27, 2021
Language: Английский
Research Square (Research Square), Journal Year: 2021, Volume and Issue: unknown
Published: April 27, 2021
Language: Английский
Reviews in Medical Virology, Journal Year: 2021, Volume and Issue: 31(6)
Published: March 16, 2021
The Spike protein is the target of both antibody-based therapeutics (convalescent plasma, polyclonal serum, monoclonal antibodies) and vaccines. Mutations in could affect efficacy those treatments. Hence, monitoring mutations necessary to forecast readapt inventory therapeutics. Different phylogenetic nomenclatures have been used for currently circulating SARS-CoV-2 clades. has different hotspots mutation deletion, most dangerous immune escape being ones within receptor binding domain (RBD), such as K417N/T, N439K, L452R, Y453F, S477N, E484K, N501Y. Convergent evolution led combinations among In this review we focus on main variants concern, that is, so-called UK (B.1.1.7), South African (B.1.351) Brazilian (P.1) strains.
Language: Английский
Citations
162Cell Host & Microbe, Journal Year: 2021, Volume and Issue: 29(5), P. 806 - 818.e6
Published: April 16, 2021
Language: Английский
Citations
65International Journal of Molecular Sciences, Journal Year: 2021, Volume and Issue: 23(1), P. 29 - 29
Published: Dec. 21, 2021
The accelerated SARS-CoV-2 evolution under selective pressure by massive deployment of neutralizing antibody-based therapeutics is a concern with potentially severe implications for public health. We review here reports documented immune escape after treatment monoclonal antibodies and COVID-19-convalescent plasma (CCP). While the former mainly associated specific single amino acid mutations at residues within receptor-binding domain (e.g., E484K/Q, Q493R, S494P), few cases evasion CCP were recurrent deletions N-terminal spike protein ΔHV69-70, ΔLGVY141-144 ΔAL243-244). continuous genomic monitoring non-responders needed to better understand frequencies fitness emerging variants.
Language: Английский
Citations
56bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2021, Volume and Issue: unknown
Published: Feb. 19, 2021
Abstract Back and forth transmission of SARS-CoV-2 between humans animals may lead to wild reservoirs virus that can endanger efforts toward long-term control COVID-19 in people, protecting vulnerable animal populations are particularly susceptible lethal disease. Predicting high risk host species is key targeting field surveillance lab experiments validate zoonotic potential. A major bottleneck predicting hosts the small number with available molecular information about structure ACE2, a cellular receptor required for viral cell entry. We overcome this by combining species’ ecological biological traits 3D modeling protein interactions using machine learning methods. This approach enables predictions capacity over 5,000 mammals — an order magnitude more than previously possible. The accuracy achieved strongly corroborated vivo empirical studies. identify numerous common mammal whose predicted close proximity further enhance spillover spillback SARS-CoV-2. Our results reveal priority areas geographic overlap global hotspots potential new With sequence data only fraction species, predictive integrating across multiple scales offers conceptual advance expand our viruses similarly unknown potentially broad ranges.
Language: Английский
Citations
29Human Vaccines & Immunotherapeutics, Journal Year: 2021, Volume and Issue: 18(2)
Published: May 19, 2021
Passive immunization with polyclonal hyper immunoglobulin (HIG) therapy represents a proven strategy by transferring immunoglobulins to patients confer immediate protection against range of pathogens including infectious agents and toxins. Distinct from active immunization, the is passive will clear system; therefore, administration an effective dose must be maintained for prophylaxis or treatment until natural adaptive immune response mounted pathogen/agent cleared. The current review provides overview this technology, key considerations address different pathogens, suggested improvements. reflect on learnings development HIGs in public health threats due Zika, influenza, severe acute respiratory syndrome coronavirus 2.
Language: Английский
Citations
24Vaccines, Journal Year: 2025, Volume and Issue: 13(4), P. 368 - 368
Published: March 30, 2025
Background: While the rapid deployment of SARS-CoV-2 vaccines had a significant impact on ongoing COVID-19 pandemic, viral immune evasion and waning neutralizing antibody titers have degraded vaccine efficacy. Nevertheless, manufacturers public health authorities number options at their disposal to maximize benefits vaccination. In particular, effect booster schedules performance bears further study. Methods: To better understand performance, we used an agent-based modeling framework population pharmacokinetic model simulate boosting frequency durability protection against infection severe acute disease. Results: Our work suggests that repeated dosing frequent intervals (three or more times year) may offset degradation efficacy, preserving utility in managing pandemic. Conclusions: Given practical significance potential improvements utility, clinical research effects vaccination would be highly impactful. These findings are particularly relevant as worldwide reduced boosters once year less.
Language: Английский
Citations
0PLoS ONE, Journal Year: 2021, Volume and Issue: 16(7), P. e0254734 - e0254734
Published: July 16, 2021
As the COVID-19 pandemic drags into its second year, there is hope on horizon, in form of SARS-CoV-2 vaccines which promise disease suppression and a return to pre-pandemic normalcy. In this study we critically examine basis for that hope, using an epidemiological modeling framework establish link between vaccine characteristics effectiveness bringing end unprecedented public health crisis. Our findings suggest social economic conditions without fully suppressing will lead extensive viral spread, resulting high burden even presence reduce risk infection mortality. points feasibility complete with population-level compliance are highly effective at reducing infection. Notably, vaccine-mediated reduction transmission critical suppression, order partially-effective play positive role complementary biomedical interventions measures must be deployed simultaneously.
Language: Английский
Citations
15PLoS ONE, Journal Year: 2021, Volume and Issue: 16(9), P. e0252849 - e0252849
Published: Sept. 9, 2021
Reverse vaccinology is an evolving approach for improving vaccine effectiveness and minimizing adverse responses by limiting immunizations to critical epitopes. Towards this goal, we sought identify immunogenic amino acid motifs linear epitopes of the SARS-CoV-2 spike protein that elicit IgG in COVID-19 mRNA recipients. Paired pre/post vaccination samples from N = 20 healthy adults, post-vaccine additional 13 individuals were used immunoprecipitate targets expressed a bacterial display random peptide library, preferentially recognized peptides mapped primary sequence. The data several distinct vaccine-induced IgG, subset those targeted natural infection, which may mimic 3-dimensional conformation (mimotopes). Dominant identified C-terminal domains S1 S2 subunits (aa 558-569, 627-638, 1148-1159) have been previously associated with neutralization vitro demonstrate identity bat coronavirus SARS-CoV, but limited homology non-pathogenic human coronavirus. should be considered context variants, immune escape therapy design moving forward.
Language: Английский
Citations
12medRxiv (Cold Spring Harbor Laboratory), Journal Year: 2021, Volume and Issue: unknown
Published: Nov. 11, 2021
Abstract Accelerated SARS-CoV-2 evolution under selective pressure by massive deployment of neutralizing antibody-based therapeutics is a concern with potentially severe implications for public health. We review here reports documented immune escape after treatment monoclonal antibodies and COVID19 convalescent plasma (CCP). While the former mainly associated specific single amino acid mutations at residues within receptor-binding domain (e.g., E484K/Q, Q493R, S494P), few cases evasion CCP were recurrent deletions N-terminal Spike protein (e.g, ΔHV69-70, ΔLGVY141-144 ΔAL243-244). Continuous genomic monitoring non-responders needed to better understand frequencies fitness emerging variants.
Language: Английский
Citations
12medRxiv (Cold Spring Harbor Laboratory), Journal Year: 2023, Volume and Issue: unknown
Published: Jan. 29, 2023
Abstract While the rapid deployment of SARS-CoV-2 vaccines had a significant impact on ongoing COVID-19 pandemic, viral immune evasion and waning neutralizing antibody titers have degraded vaccine efficacy. Nevertheless, manufacturers public health authorities number levers at their disposal to maximize benefits vaccination. Here, we use an agent-based modeling framework coupled with outputs population pharmacokinetic model examine boosting frequency durability vaccinal response Our work suggests that repeated dosing frequent intervals (multiple times year) may offset degradation efficacy, preserving utility in managing pandemic. relies assumptions about accumulation tolerability doses. Given practical significance potential improvements utility, clinical research better understand effects vaccination would be highly impactful. These findings are particularly relevant as worldwide seek reduce boosters once year or less. recommendations for draws attention possibility outcomes remain within reach.
Language: Английский
Citations
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