bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: July 18, 2023
Abstract
Insights
into
single
cell
expression
data
are
generally
collected
through
well
conserved
biological
markers
that
separate
cells
known
and
unknown
populations.
Unfortunately
for
non-model
organisms
lack
markers,
it
is
often
impossible
to
partition
biologically
relevant
clusters
which
hinders
analysis
the
species.
Tribolium
castaneum
,
red
flour
beetle,
lacks
spermatogenesis
found
in
insect
species
like
Drosophila
melanogaster
.
Using
sequencing
from
adult
beetle
testes,
we
implement
a
strategy
elucidating
meaningful
populations
by
using
transient
stage
identification
weighted
principal
component
leiden
clustering.
We
identify
correspond
observable
points
sperm
differentiation
find
specific
each
stage.
also
develop
an
innovative
method
differentiate
diploid
haploid
based
on
scRNA-Seq
reads
use
corroborate
our
predicted
demarcation
of
meiotic
stages.
Our
results
demonstrate
molecular
pathways
underlying
Coleoptera
highly
diverged
those
Diptera,
relying
several
genes
with
female
pathway
annotations.
X
chromosome
almost
completely
silenced
throughout
pre-meiotic
cells.
Further
evidence
suggests
machinery
homologous
dosage
compensation
complex
(DCC)
may
mediate
escape
sex
inactivation
postmeiotic
reactivation
chromosome.
PLoS Pathogens,
Journal Year:
2023,
Volume and Issue:
19(8), P. e1010934 - e1010934
Published: Aug. 7, 2023
The
genetic
causes
of
phenotypic
variation
often
differ
depending
on
the
population
examined,
particularly
if
populations
were
founded
by
relatively
small
numbers
genotypes.
Similarly,
among
similar
traits
(resistance
to
different
xenobiotic
compounds
or
pathogens)
may
also
be
completely
only
partially
overlapping.
Differences
in
for
same
trait
suggests
context
dependence
how
selection
acts
those
traits.
Similarities
traits,
other
hand,
pleiotropy
which
would
influence
natural
shapes
a
trait.
We
characterized
immune
defense
against
Drosophila
pathogen,
Gram-positive
bacterium
Lysinibacillus
fusiformis
,
three
and
found
almost
no
overlap
architecture
survival
post
infection.
However,
when
comparing
our
results
experiment
with
fungal
B
.
bassiana
we
convincing
shared
QTL
peak
both
pathogens.
This
contains
Bomanin
cluster
effectors.
Loss
function
mutants
RNAi
knockdown
experiments
confirms
role
some
these
genes
that
act
entire
(and
linked
region
under
QTL)
specific
peptides
Royal Society Open Science,
Journal Year:
2024,
Volume and Issue:
11(10)
Published: Oct. 1, 2024
Frequent
and
extreme
temperatures
associated
with
climate
change
pose
a
major
threat
to
biodiversity,
particularly
for
organisms
whose
metabolism
is
strictly
linked
ambient
temperatures.
Many
studies
have
explored
thermal
effects
on
survival,
but
heat-induced
fertility
loss
emerging
as
greater
population
persistence.
However,
while
evidence
accumulating
that
both
juvenile
adult
stages
heat
exposure
can
impair
in
their
own
ways,
much
less
known
about
the
immediate
longer-term
fitness
consequences
of
repeated
stress
across
life
stages.
To
address
this
knowledge
gap,
we
used
male
Drosophila
melanogaster
investigate
(i)
cumulative
stages,
(ii)
potential
recovery
from
these
exposures,
(iii)
underlying
mechanisms.
We
found
individual
combined
chronic
acute
traits.
These
tended
exacerbate
over
several
days
after
brief
exposure,
indicating
substantial
short-lived
organisms.
Our
findings
highlight
persistent
fitness.
Such
could
accelerate
declines,
more
vulnerable
species,
emphasizing
importance
considering
reproduction
its
accurate
models
species
Authorea (Authorea),
Journal Year:
2022,
Volume and Issue:
unknown
Published: July 12, 2022
The
predicted
temperature
increase
caused
by
climate
change
is
a
threat
to
biodiversity.
Male
reproduction
particularly
sensitive
elevated
temperatures
resulting
in
sterility.
Here
we
investigate
induced
changes
reproductive
tissues
and
the
fertility
reduction
male
Drosophila
melanogaster.
We
challenged
males
during
development
either
allowed
them
recover
or
not
early
adulthood,
while
measuring
several
determinants
of
success.
found
significant
differences
recovery
rate,
organ
sizes,
sperm
production
other
key
traits
among
from
our
different
treatments.
Spermatogenesis
hence
maturation
was
impaired
before
reaching
upper
thermal
sterility
threshold.
While
some
effects
were
reversible,
this
did
compensate
earlier
damage
imposed.
Surprisingly,
developmental
heat
stress
damaging
accessory
gland
growth
female
post
mating
responses
mediated
seminal
fluid
proteins
regardless
possibility
recovery.
suggest
that
sub-lethal
subsequent
combination
malfunctioning
traits:
inefficient
functionality
alteration
spermatogenesis.
Research Square (Research Square),
Journal Year:
2023,
Volume and Issue:
unknown
Published: May 2, 2023
Abstract
Current
pest
management
relies
extensively
on
pesticide
application
worldwide,
despite
the
frequent
rise
of
resistance
in
crop
pests.
This
is
particularly
worrisome
because
often
not
costly
enough
to
be
lost
populations
after
application,
resulting
increased
dependency
application.
As
climate
warming
increases,
effort
should
put
into
understanding
how
thermal
tolerance
will
affect
persistence
populations.
To
address
this,
we
measured
two
spider
mite
Tetranychus
urticae
that
differ
solely
presence
or
absence
a
target-site
mutation
conferring
etoxazole
pesticide.
We
found
developmental
time
and
fertility,
but
survival,
were
negatively
affected
by
increasing
temperatures
susceptible
population.
Furthermore,
no
difference
between
resistant
all
life-history
traits
when
both
sexes
developed
at
control
temperature,
nor
females
high
temperature.
Resistant
heat-stressed
males,
contrast,
showed
lower
fertility
than
ones,
indicating
sex-specific
trade-off
resistance.
suggests
global
can
lead
reduced
natural
However,
females,
being
as
temperature
individuals,
may
buffer
toll
male
fertility.
In
addition,
decrease
accelerate
adaptation
pesticide,
which
promote
maintenance
under
warming.
Evolutionary Applications,
Journal Year:
2024,
Volume and Issue:
17(9)
Published: Sept. 1, 2024
ABSTRACT
Current
pest
management
relies
extensively
on
pesticide
application
worldwide,
despite
the
frequent
rise
of
resistance
in
crop
pests.
This
is
particularly
worrisome
because
often
not
costly
enough
to
be
lost
populations
after
application,
resulting
increased
dependency
application.
As
climate
warming
increases,
effort
should
put
into
understanding
how
heat
tolerance
will
affect
persistence
populations.
To
address
this,
we
measured
two
spider
mite
Tetranychus
urticae
that
differ
presence
or
absence
a
target‐site
mutation
conferring
etoxazole
pesticide.
We
found
developmental
time
and
fertility,
but
survival,
were
negatively
affected
by
increasing
temperatures
susceptible
population.
Furthermore,
no
difference
between
resistant
all
life‐history
traits
when
both
sexes
developed
at
control
temperature,
nor
females
high
temperature.
Resistant
heat‐stressed
males,
contrast,
showed
lower
fertility
than
ones,
indicating
sex‐specific
trade‐off
resistance.
suggests
global
could
lead
reduced
natural
However,
females,
being
as
temperature
individuals,
may
buffer
toll
male
shorter
accelerate
adaptation
cost
thereof.
Ultimately,
complex
dynamic
these
factors
determine
whether
can
persist
under
warming.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Oct. 21, 2022
Abstract
The
genetic
causes
of
phenotypic
variation
often
differ
depending
on
the
population
examined,
particularly
if
populations
were
founded
by
relatively
small
numbers
genotypes.
Similarly,
among
similar
traits
(resistance
to
different
xenobiotic
compounds
or
pathogens)
may
also
be
completely
only
partially
overlapping.
Differences
in
for
same
trait
suggests
considerable
context
dependence
how
selection
might
act
those
traits.
Similarities
traits,
other
hand,
pleiotropy
which
would
influence
natural
shape
a
trait.
We
characterized
immune
defense
against
Drosophila
pathogen,
Gram-positive
Lysinibacillus
fusiformis
,
three
and
found
almost
no
overlap
architecture
survival
post
infection.
However,
when
comparing
our
results
experiment
with
fungal
B.
bassiana
we
convincing
shared
QTL
peak
both
pathogens.
This
contains
Bomanin
cluster
effectors.
RNAi
knockdown
experiments
confirms
role
some
these
genes
that
entire
(and
linked
region
under
QTL)
specific
peptides
Author
Summary
Like
most
way
individuals
respond
infection
vary
within
population.
Some
this
is
caused
differences
host
organism.
Over
past
decade,
two
prominent
resources
developed
assess
complex
fruit
fly,
melanogaster
map
variants
responsible.
recently
described
strain
bacteria,
was
isolated
from
flies
moderately
virulent
are
infected.
mapped
resistance
L.
using
mapping
resources.
find
resources,
changes
associated
defense.
resource,
genome
pathogen.
These
suggest
adapt
differently
pathogens,
but
distinct
pathogens
share
single
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Nov. 1, 2022
ABSTRACT
Climates
are
changing
rapidly,
demanding
equally
rapid
adaptation
of
natural
populations.
Whether
sexual
selection
can
aid
such
is
under
debate;
while
should
promote
when
individuals
with
high
mating
success
also
best
adapted
to
their
local
surroundings,
the
expression
sexually
selected
traits
incur
costs.
Here
we
asked
what
demographic
consequences
costs
may
be
once
climates
change
become
harsher
and
strength
increases.
We
investigated
how
an
evolutionary
history
strong
postcopulatory
(sperm
competition)
affects
male
fertility
acute
adult
heat
stress.
Harnessing
empirical
potential
long-term
experimental
evolution
in
seed
beetle
Callosobruchus
maculatus
,
assessed
thermal
sensitivity
(TSF)
replicated
lines
maintained
for
68
generations
three
alternative
regimes
manipulating
opportunity
selection.
find
that
males
evolving
suffer
from
increased
TSF,
sperm
competition
(P2:
offense)
genetically
correlated
TSF.
Interestingly,
females
regime
selection,
who
experienced
relaxed
on
own
reproductive
effort,
had
benign
settings
but
suffered
like
brothers.
This
implies
female
TSF
evolved
through
genetic
correlation
males.
Paternal
not
maternal
stress
reduced
offspring
no
evidence
adaptive
transgenerational
plasticity
among
heat-exposed
offspring,
indicating
observed
effects
compound
over
generations.
Our
results
suggest
trade-offs
between
increasing
revealed
harsh
environments.
put
polyandrous
species
risk
during
extreme
waves
expected
future
climate
change.
IMPACT
STATEMENT
How
will
populations
respond
a
warming
world?
Of
concern
negative
elevated
temperatures
fertility,
which
many
substantially
lower
than
ones
causing
death.
Incorporating
knowledge
species-specific
limits
has
improved
estimates
current
species’
ranges
renders
more
pessimistic
view
responses
Sexual
process
interact
strongest
species,
mate
multiply
multiple
compete
fertilization
eggs.
Therefore,
often
invest
heavily
competition.
However,
given
finite
resources,
investment
come
at
expense
other
processes
needed
maintain
integrity
germline,
compromised
reduce
quality.
investment,
fuelled
by
affect
warming?
To
address
this
question,
first
different
laboratory
independently
manipulated
levels
exposed
adults
these
measured
females.
leads
debt
was
apparent
females,
themselves
were
investment.
Thus,
genes
seems
have
impaired
both
sexes
Forecasts
response
do
incorporate
therefore
underestimate
vulnerability
temperatures.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: July 18, 2023
Abstract
Insights
into
single
cell
expression
data
are
generally
collected
through
well
conserved
biological
markers
that
separate
cells
known
and
unknown
populations.
Unfortunately
for
non-model
organisms
lack
markers,
it
is
often
impossible
to
partition
biologically
relevant
clusters
which
hinders
analysis
the
species.
Tribolium
castaneum
,
red
flour
beetle,
lacks
spermatogenesis
found
in
insect
species
like
Drosophila
melanogaster
.
Using
sequencing
from
adult
beetle
testes,
we
implement
a
strategy
elucidating
meaningful
populations
by
using
transient
stage
identification
weighted
principal
component
leiden
clustering.
We
identify
correspond
observable
points
sperm
differentiation
find
specific
each
stage.
also
develop
an
innovative
method
differentiate
diploid
haploid
based
on
scRNA-Seq
reads
use
corroborate
our
predicted
demarcation
of
meiotic
stages.
Our
results
demonstrate
molecular
pathways
underlying
Coleoptera
highly
diverged
those
Diptera,
relying
several
genes
with
female
pathway
annotations.
X
chromosome
almost
completely
silenced
throughout
pre-meiotic
cells.
Further
evidence
suggests
machinery
homologous
dosage
compensation
complex
(DCC)
may
mediate
escape
sex
inactivation
postmeiotic
reactivation
chromosome.