BMC Microbiology,
Journal Year:
2021,
Volume and Issue:
21(1)
Published: April 9, 2021
Experimental
evolution
has
a
long
history
of
uncovering
fundamental
insights
into
evolutionary
processes,
but
largely
neglected
one
underappreciated
component--the
microbiome.
As
eukaryotic
hosts
evolve,
the
microbiome
may
also
respond
to
selection.
However,
microbial
contribution
host
remains
poorly
understood.
Here,
we
re-analyzed
genomic
data
characterize
metagenomes
from
ten
Evolve
and
Resequence
(E&R)
experiments
in
Drosophila
melanogaster
determine
how
changed
response
selection.Bacterial
diversity
was
significantly
different
5/10
studies,
primarily
traits
associated
with
metabolism
or
immunity.
Duration
selection
did
not
influence
bacterial
diversity,
highlighting
importance
associations
specific
traits.Our
re-analysis
suggests
often
responds
selection;
thus,
contribute
E&R
experiments.
We
outline
important
considerations
for
incorporating
The
approach
provide
critical
host-microbiome
interactions
insight
basis
adaptation.
The Science of The Total Environment,
Journal Year:
2021,
Volume and Issue:
803, P. 149923 - 149923
Published: Aug. 26, 2021
While
it
is
often
assumed
that
oncogenic
processes
in
metazoans
can
influence
species
interactions,
empirical
evidence
lacking.
Here,
we
use
the
cnidarian
Hydra
oligactis
to
experimentally
explore
consequences
of
tumor
associated
phenotypic
alterations
for
its
predation
ability,
relationship
with
commensal
ciliates
and
vulnerability
predators.
Unexpectedly,
hydra's
ability
was
higher
tumorous
polyps
compared
non-tumorous
ones.
Commensal
colonized
preferentially
hydras
than
ones,
had
a
replication
rate
on
former.
Finally,
choice
experiment,
were
eaten
by
fish
predator.
This
study,
first
time,
provides
neoplastic
growth
has
potential,
through
effect(s)
host
phenotype,
alter
biotic
interactions
within
ecosystems
should
thus
be
taken
into
account
ecologists.
PLoS Genetics,
Journal Year:
2022,
Volume and Issue:
18(5), P. e1010206 - e1010206
Published: May 23, 2022
It
is
becoming
increasingly
clear
that
microbial
symbionts
influence
key
aspects
of
their
host’s
fitness,
and
vice
versa
.
This
may
fundamentally
change
our
thinking
about
how
microbes
hosts
interact
in
influencing
fitness
adaptation
to
changing
environments.
Here
we
explore
reductions
population
size
commonly
experienced
by
threatened
species
microbiome
diversity.
Consequences
such
are
normally
interpreted
terms
a
loss
genetic
variation,
increased
inbreeding
associated
depression.
However,
effects
bottlenecks
might
also
be
mediated
through
diversity,
as
functionally
important
microbes.
utilise
50
Drosophila
melanogaster
lines
with
different
histories
these
questions.
The
were
phenotyped
for
egg-to-adult
viability
genomes
sequenced
estimate
variation.
bacterial
16S
rRNA
gene
was
amplified
investigate
We
found
1)
host
constrained
richness
2)
core
microbiomes
low
variation
constituted
from
subsets
flies
higher
3)
both
diversity
contributed
4)
connectivity
robustness
networks
the
inbred
regardless
5)
reduced
weaker
evolutionary
responses
stressful
environments,
6)
unrelated
Wolbachia
density.
These
findings
suggest
reduce
hologenomic
(combined
variation).
Thus,
while
current
biodiversity
crisis
focuses
on
sizes
eukaryotes,
an
additional
focal
point
should
carried
which
turn
adaptability
consequences
persistence
populations.
Microbial Ecology,
Journal Year:
2022,
Volume and Issue:
85(4), P. 1564 - 1577
Published: April 28, 2022
Gut
microbial
communities
provide
essential
functions
to
their
hosts
and
are
known
influence
both
ecology
evolution.
However,
our
knowledge
of
these
complex
associations
is
still
very
limited
in
reptiles.
Here
we
report
the
16S
rRNA
gene
faecal
microbiota
profiles
two
lizard
species
endemic
Balearic
archipelago
(Podarcis
lilfordi
P.
pityusensis),
encompassing
allopatric
range
distribution
through
a
noninvasive
sampling,
as
an
alternative
previous
studies
that
implied
killing
specimens
IUCN
endangered
near-threatened
species,
respectively.
Both
showed
microbiome
composition
consistent
with
omnivorous
trophic
ecology,
high
representation
cellulolytic
bacteria
taxa.
We
also
identified
species-specific
core
signatures
retrieved
islet
ascription,
seasonality
main
factors
explaining
bacterial
community
composition.
The
different
Podarcis
populations
characterised
by
harbouring
proportion
unique
taxa,
thus
reinforcing
view
divergent
evolutionary
entities.
Molecular Ecology,
Journal Year:
2022,
Volume and Issue:
31(22), P. 5765 - 5783
Published: Sept. 16, 2022
Understanding
the
role
of
genetic
and
nongenetic
variants
in
modulating
phenotypes
is
central
to
our
knowledge
adaptive
responses
local
conditions
environmental
change,
particularly
species
with
such
low
population
diversity
that
it
likely
limit
their
evolutionary
potential.
A
first
step
towards
uncovering
molecular
mechanisms
underlying
population-specific
environment
carry
out
association
studies.
We
associated
climatic
variation
genetic,
epigenetic
microbiome
populations
a
social
spider
extremely
standing
diversity.
identified
are
strongly
variation,
average
temperature,
pattern
consistent
adaptation.
Variation
DNA
methylation
many
genes
was
correlated
wide
set
climate
parameters,
thereby
revealing
different
associations
than
variants,
which
show
strong
correlations
more
restricted
range
parameters.
levels
were
largely
independent
cis-genetic
overall
structure,
suggesting
can
work
as
an
mechanism.
Microbiome
composition
also
but
most
precipitation-related
factors.
Our
results
suggest
for
both
shaping
phenotypic
environments.
Ecology and Evolution,
Journal Year:
2024,
Volume and Issue:
14(7)
Published: July 1, 2024
Abstract
The
microbiome
contributes
to
many
different
host
traits,
but
its
role
in
adaptation
remains
enigmatic.
fitness
benefits
of
the
often
depend
on
ecological
conditions,
theory
suggests
that
fluctuations
both
and
environment
modulate
these
benefits.
Moreover,
vertically
transmitted
bacteria
might
constrain
ability
respond
changing
environments.
Drosophila
melanogaster
provides
an
excellent
system
investigate
impacts
interactions
between
environment.
To
address
this
question,
we
created
field
mesocosms
D.
undergoing
seasonal
environmental
change
with
without
bacteria,
Wolbachia
pipientis
.
Sampling
temporal
patterns
revealed
constrained
microbial
diversity.
Furthermore,
a
dominant
member
microbiome,
Commensalibacter
,
were
associated
differences
two
higher‐order
starvation
resistance
lifespan.
Our
work
here
interplay
abiotic
context
microbe–microbe
may
shape
key
phenotypes
underlie
We
conclude
by
exploring
consequences
complex
for
our
understanding
eco‐evolutionary
processes
host‐microbiome
interactions.
Animal Microbiome,
Journal Year:
2025,
Volume and Issue:
7(1)
Published: Jan. 3, 2025
Abstract
Background
Evolutionary
tradeoffs
between
life-history
strategies
are
important
in
animal
evolution.
Because
microbes
can
influence
multiple
aspects
of
host
physiology,
including
growth
rate
and
susceptibility
to
disease
or
stress,
changes
animal-microbial
symbioses
have
the
potential
mediate
tradeoffs.
Scleractinian
corals
provide
a
biodiverse,
data-rich,
ecologically-relevant
system
explore
this
idea.
Results
Using
comparative
approach,
we
tested
if
coral
microbiomes
correlate
with
across
425
million
years
evolution
by
conducting
cross-species
microbiome
survey
(the
“Global
Coral
Microbiome
Project”)
combining
results
long-term
global
prevalence
trait
data.
Interpreting
these
data
their
phylogenetic
context,
show
that
microbial
dominance
predicts
susceptibility,
traced
dominance-disease
association
single
putatively
beneficial
symbiont
genus,
Endozoicomonas.
Endozoicomonas
relative
abundance
tissue
explained
30%
variation
60%
40
genera,
while
also
correlating
strongly
high
rates.
Conclusions
These
demonstrate
symbiosis
correlates
both
rate,
suggest
mediating
role.
Exploration
mechanistic
basis
for
findings
will
be
our
understanding
how
Insect Science,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 18, 2025
Abstract
Insects
and
their
associated
microbiota
have
developed
a
sustained
mutually
beneficial
relationship,
characterized
by
the
influence
of
symbiotic
microorganisms
on
host's
physiological
processes
fitness
parameters.
The
Mediterranean
fruit
fly,
Ceratitis
capitata
(Diptera:
Tephritidae),
is
one
world's
most
ubiquitous,
invasive,
harmful
agricultural
pests.
In
Tunisia,
medfly
widely
distributed
across
all
bioclimatic
zones.
However,
in
absence
surveillance,
infestations
can
escalate
drastically,
causing
damage
levels
as
high
100%.
Our
study
aimed
to
characterize
microbiome
profile
Tunisian
populations
from
Zaghouan,
Tozeur,
Siliana,
Bizerte
understand
microbial
dynamics
implicated
invasiveness
adaptability
potential
if
SIT
applied.
We
conducted
amplicon
sequencing
using
MiSeq
Illumina
culture‐dependent
approach.
findings
revealed
notable
differences
communities
regions.
For
instance,
Serratia
was
prevalent
Tozeur
populations,
while
Klebsiella
showed
abundance
Bizerte.
composition
bacterial
within
influenced
several
factors
including
environmental
conditions,
geographical
location,
developmental
stage,
sex
insects.
Investigating
intricate
relationship
between
insects
pivotal
for
understanding
biology
developing
effective
pest
management
strategies.
Additionally,
isolation
bacteria
adult
larval
medflies
collected
region
presence
species
that
could
be
utilized
attractants
or
supplements
artificial
diets
case
application
aiming
at
producing
competitive
sterile
males.
Proceedings of the Royal Society B Biological Sciences,
Journal Year:
2025,
Volume and Issue:
292(2043)
Published: March 1, 2025
Can
the
microbiome
serve
as
a
reservoir
of
adaptive
potential
for
hosts?
To
address
this
question,
we
leveraged
approximately
150
generations
experimental
evolution
in
Drosophila
melanogaster
on
stressful,
high-sugar
diet.
We
performed
fully
reciprocal
transplant
experiment
using
control
and
bacteria.
If
confers
benefits
to
hosts,
then
recipients
should
gain
fitness
compared
with
controls.
Interestingly,
found
that
such
exist,
but
their
magnitude
depends
evolutionary
history—mismatches
between
fly
reduced
fecundity
potentially
exerted
costs,
especially
stressful
The
dominant
bacteria
(
Acetobacter
pasteurianus
)
uniquely
encoded
several
genes
enable
uric
acid
degradation,
mediating
toxic
effects
accumulation
due
diet
flies.
Our
study
demonstrates
host
genotype
×
environment
interactions
have
substantial
phenotype,
highlighting
how
ecological
context
together
shape
microbiome.