ACS Synthetic Biology,
Journal Year:
2022,
Volume and Issue:
12(1), P. 164 - 177
Published: Dec. 15, 2022
ProcM-like
enzymes
are
class
II
promiscuous
lanthipeptide
synthetases
that
an
attractive
tool
in
synthetic
biology
for
producing
lanthipeptides
with
biotechnological
or
clinically
desired
properties.
SyncM
is
a
recently
described
modification
enzyme
from
this
family
used
to
develop
versatile
expression
platform
engineering
lanthipeptides.
Most
remarkably,
can
modify
up
79
SyncA
substrates
single
strain.
Six
SyncAs
were
previously
characterized
pool
of
substrates.
They
showed
particular
characteristics,
such
as
the
presence
one
two
lanthionine
rings,
different
flanking
residues
influencing
ring
formation,
and
directions,
demonstrating
relaxed
specificity
toward
its
precursor
peptides.
To
gain
deeper
understanding
potential
biosynthetic
tool,
we
further
explored
enzyme′s
capabilities
limits
dehydration
formation.
We
scaffolds
peptide
engineering,
including
changes
ring′s
directionality
(relative
position
Ser/Thr
Cys
peptide)
size.
aimed
rationally
design
mimetics
cyclic
antimicrobials
introduce
macrocycles
prochlorosin-related
nonrelated
This
study
highlights
largest
15
amino
acids
(ring-forming
included)
date.
Taking
advantage
acid
substrate
tolerance
SyncM,
designed
first
single-SyncA-based
antimicrobial.
The
insights
gained
work
will
aid
future
bioengineering
studies.
Additionally,
it
broadens
SyncM′s
application
scope
introducing
other
bioactive
molecules.
FEMS Microbiology Reviews,
Journal Year:
2023,
Volume and Issue:
47(3)
Published: May 1, 2023
It
is
almost
a
century
since
nisin
was
discovered
in
fermented
milk
cultures,
coincidentally
the
same
year
that
penicillin
first
described.
Over
last
100
years
this
small,
highly
modified
pentacyclic
peptide
has
not
only
found
success
food
industry
as
preservative
but
also
served
paradigm
for
our
understanding
of
genetic
organization,
expression
and
regulation
genes
involved
lantibiotic
biosynthesis
-
one
few
cases
extensive
post-translation
modification
prokaryotes.
Recent
developments
complex
have
shed
light
on
cellular
location
transport
machinery
co-ordinated
series
spatio-temporal
events
required
to
produce
active
provide
resistance
immunity.
The
continued
unearthing
new
natural
variants
from
within
human
animal
gastrointestinal
tracts
sparked
interest
potential
application
influence
microbiome,
given
growing
recognition
role
microbiota
plays
health
disease.
Moreover,
interdisciplinary
approaches
taken
advantage
biotechnological
advancements
bioengineer
novel
expand
functionality
applications
biomedical
field.
This
review
will
discuss
latest
progress
these
aspects
research.
Nature Communications,
Journal Year:
2024,
Volume and Issue:
15(1)
Published: May 21, 2024
Ribosomally
synthesized
and
post-translationally
modified
peptides
(RiPPs)
are
a
major
class
of
natural
products
with
diverse
chemical
structures
potent
biological
activities.
A
vast
majority
RiPP
gene
clusters
remain
unexplored
in
microbial
genomes,
which
is
partially
due
to
the
lack
rapid
efficient
heterologous
expression
systems
for
characterization
biosynthesis.
Here,
we
report
unified
biocatalysis
(UniBioCat)
system
based
on
cell-free
biosynthesis
engineering
RiPPs.
We
demonstrate
UniBioCat
by
reconstituting
full
biosynthetic
pathway
de
novo
salivaricin
B,
lanthipeptide
RiPP.
Next,
delete
several
protease/peptidase
genes
from
source
strain
enhance
performance
UniBioCat,
then
can
synthesize
screen
B
variants
enhanced
antimicrobial
activity.
Finally,
show
that
generalizable
synthesizing
evaluating
bioactivity
ten
uncharacterized
lanthipeptides.
expect
accelerate
discovery,
characterization,
synthesis
Pharmaceutics,
Journal Year:
2023,
Volume and Issue:
15(7), P. 1893 - 1893
Published: July 5, 2023
Bacillus
licheniformis
produces
several
classes
of
antimicrobial
substances,
including
bacteriocins,
which
are
peptides
or
proteins
with
different
structural
composition
and
molecular
mass:
ribosomally
synthesized
by
bacteria
(1.4-20
kDa),
non-ribosomally
cyclic
lipopeptides
(0.8-42
kDa)
exopolysaccharides
(>1000
kDa).
Different
bacteriocins
act
against
Gram-positive
Gram-negative
bacteria,
fungal
pathogens
amoeba
cells.
The
main
mechanisms
bacteriocin
lytic
activity
include
interaction
membranes
target
cells
resulting
in
alterations,
pore-forming,
inhibition
cell
wall
biosynthesis.
DNase
RNase
for
some
bacteriocines
also
postulated.
Non-ribosomal
special
non-ribosomal
multimodular
peptide
synthetases
contain
unnatural
amino
acids
fatty
acids.
Their
harmful
effect
is
due
to
their
ability
form
pores
biological
membranes,
destabilize
lipid
packaging,
disrupt
the
peptidoglycan
layer.
Lipopeptides,
as
biosurfactants,
able
destroy
bacterial
biofilms.
Secreted
polysaccharides
high
weight
compounds,
composed
repeated
units
sugar
moieties
attached
a
carrier
lipid.
antagonistic
action
was
revealed
relation
viruses,
fungi.
Exopolysaccharides
inhibit
formation
biofilms
pathogenic
prevent
colonization
on
various
surfaces.
However,
mechanism
many
secreted
antibacterial
substances
remains
unknown.
most
has
been
studied
vitro
only,
but
have
characterized
vivo
they
found
practical
applications
medicine
veterinary.
that
surfactant
properties
used
industries.
In
this
review,
attention
paid
antimycobacterials
produced
B.
possible
approach
combat
multidrug-resistant
latent
tuberculosis.
particular,
licheniformins
bacitracins
shown
strong
antimycobacterial
activity.
medical
application
antibacterials
promising
limited
toxicity
animals
humans.
As
such,
similar
enhancement
natural
achieved
using
genetic
engineering,
reduction
same
appears
feasible.
unique
capability
synthesize
produce
range
compounds
means
organism
can
universal
vehicle
antibiotic
probiotic
cultures
strains
types
pathogens,
mycobacteria.
ACS Infectious Diseases,
Journal Year:
2024,
Volume and Issue:
10(5), P. 1483 - 1519
Published: May 1, 2024
The
development
of
effective
antibacterial
solutions
has
become
paramount
in
maintaining
global
health
this
era
increasing
bacterial
threats
and
rampant
antibiotic
resistance.
Traditional
antibiotics
have
played
a
significant
role
combating
infections
throughout
history.
However,
the
emergence
novel
resistant
strains
necessitates
constant
innovation
research.
We
analyzed
data
on
antibacterials
from
CAS
Content
Collection,
largest
human-curated
collection
published
scientific
knowledge,
which
proven
valuable
for
quantitative
analysis
knowledge.
Our
focuses
mining
Collection
recent
publications
(since
2012).
This
article
aims
to
explore
intricate
landscape
research
while
reviewing
advancement
traditional
emerging
strategies.
By
delving
into
resistance
mechanisms,
paper
highlights
need
find
alternate
strategies
address
growing
concern.
Journal of Basic Microbiology,
Journal Year:
2024,
Volume and Issue:
64(5)
Published: Feb. 2, 2024
Abstract
In
recent
years,
antibiotic
therapy
has
encountered
significant
challenges
due
to
the
rapid
emergence
of
multidrug
resistance
among
bacteria
responsible
for
life‐threatening
illnesses,
creating
uncertainty
about
future
management
infectious
diseases.
The
escalation
antimicrobial
in
post‐COVID
era
compared
pre‐COVID
raised
global
concern.
prevalence
nosocomial‐related
infections,
especially
outbreaks
drug‐resistant
strains
Staphylococcus
aureus
,
have
been
reported
worldwide,
with
India
being
a
notable
hotspot
such
occurrences.
Various
virulence
factors
and
mutations
characterize
nosocomial
infections
involving
S.
.
lack
proper
alternative
treatments
leading
increased
drug
emphasizes
need
investigate
examine
research
combat
pandemics.
current
genomics
era,
application
advanced
technologies
as
next‐generation
sequencing
(NGS),
machine
learning
(ML),
quantum
computing
(QC)
genomic
analysis
prediction
significantly
pace
diagnosing
pathogens
insights
into
genetic
intricacies.
Despite
prompt
diagnosis,
elimination
remains
unattainable
absence
effective
therapies.
Researchers
are
exploring
various
therapeutic
approaches,
including
phage
therapy,
peptides,
photodynamic
vaccines,
host‐directed
therapies,
more.
proposed
review
mainly
focuses
on
journey
over
past
decade,
detailing
its
mechanisms,
subcontinent,
innovations
diagnosis
strains,
applicants
NGS
ML
along
QC,
it
helps
design
novel
therapeutics
approaches
against
infection.
Frontiers in Microbiology,
Journal Year:
2023,
Volume and Issue:
14
Published: March 28, 2023
The
human
oral
cavity
contains
a
diversity
of
microbial
habitats
that
have
been
adopted
and
adapted
to
as
homeland
by
an
amazingly
heterogeneous
population
microorganisms
collectively
referred
the
microbiota.
These
microbes
generally
co-habit
in
harmonious
homeostasis.
However,
under
conditions
imposed
stress,
with
changes
host’s
physiology
or
nutritional
status,
response
foreign
antimicrobial
incursions,
some
components
“microbiome”
(viz.
situ
microbiota)
may
enter
dysbiotic
state.
This
microbiome
dysbiosis
can
manifest
variety
guises
including
streptococcal
sore
throats,
dental
caries,
thrush,
halitosis
periodontal
disease.
Most
strategies
currently
available
for
management
treatment
diseases
focus
on
repetitive
“broad
sweep”
short-term
culling
microbe
populations,
hopefully
perceived
principal
pathogens.
Both
physical
chemical
techniques
are
used.
application
more
focused
approaches
harnessing
elimination
key
pathogens
is
now
feasible
through
use
probiotic
strains
naturally
colonization
also
equipped
produce
anti-competitor
molecules
such
bacteriocins
bacteriocin-like
inhibitory
substances
(viz
BLIS).
Some
these
probiotics
capable
suppressing
proliferation
recognized
mouth,
thereby
assisting
restoration
BLIS
K12
M18,
progenitors
BLIS-producing
probiotics,
members
commensal
species
Streptococcus
salivarius.
More
recently
however,
number
other
non-streptococcal
candidate
promoted.
What
becoming
increasingly
apparent
future
applications
will
probably
extend
well
beyond
attempted
limitation
direct
pathological
consequences
encompass
plethora
systemic
disorders
host.
background
evolving
prospects
beneficial
modulation
via
S.
salivarius
comprises
present
review.
The ISME Journal,
Journal Year:
2024,
Volume and Issue:
18(1)
Published: Jan. 1, 2024
Abstract
Many
bacteria
produce
antimicrobial
compounds
such
as
lantibiotics
to
gain
advantage
in
the
competitive
natural
environments
of
microbiomes.
Epilancins
constitute
an
until
now
underexplored
family
with
unknown
ecological
role
and
unresolved
mode
action.
We
discovered
production
epilancin
nasal
isolate
Staphylococcus
epidermidis
A37.
Using
bioinformatic
tools,
we
found
that
epilancins
are
frequently
encoded
within
staphylococcal
genomes,
highlighting
their
relevance.
demonstrate
A37
contributes
competition
specifically
against
corynebacterial
competitors.
Combining
microbiological
approaches
quantitative
vivo
vitro
fluorescence
microscopy
cryo-electron
tomography,
show
enters
cytoplasm
through
a
partially
transmembrane-potential-driven
uptake
without
impairing
cell
membrane
function.
Upon
intracellular
aggregation,
induces
formation
vesicles,
which
heavily
loaded
compound
essential
for
antibacterial
activity
epilancin.
Our
work
sheds
light
on
staphylococci
mediated
by
action
previously
lantibiotics.