Hematoxylin and eosin staining of intact tissues via delipidation and ultrasound DOI Creative Commons

Yawu Li,

Ning Li, Xiang Yu

et al.

Scientific Reports, Journal Year: 2018, Volume and Issue: 8(1)

Published: Aug. 10, 2018

Acquiring information on the precise distribution of a tumor is essential to evaluate intratumoral heterogeneity. Conventional hematoxylin and eosin staining, which has been used by pathologists for more than 100 years, gold standard diagnosis. However, it difficult stain entire tissues with then acquire three-dimensional cells in solid tumors due difficulties staining rinsing. In this paper, we propose modified method, delipidation ultrasound waves were applied enhance tissue permeability accelerate dye diffusion. This improved method termed iHE (intact staining). We intact organs mice, sectioned imaged sequentially. The results showed that whole was stained homogeneously. Combined micro-optical sectioning tomography (MOST), can be 3D volume imaging heterogeneity spatially. Therefore, may help accurately diagnose invasion stage guide clinical treatments.

Language: Английский

Tissue clearing and its applications in neuroscience DOI Open Access
Hiroki R. Ueda, Ali Ertürk,

Kwanghun Chung

et al.

Nature reviews. Neuroscience, Journal Year: 2020, Volume and Issue: 21(2), P. 61 - 79

Published: Jan. 2, 2020

Language: Английский

Citations

499

Protection of tissue physicochemical properties using polyfunctional crosslinkers DOI

Young-Gyun Park,

Chang Ho Sohn, Ritchie Chen

et al.

Nature Biotechnology, Journal Year: 2018, Volume and Issue: 37(1), P. 73 - 83

Published: Dec. 17, 2018

Language: Английский

Citations

381

Tissue clearing of both hard and soft tissue organs with the PEGASOS method DOI Creative Commons
Dian Jing, Shiwen Zhang,

Wenjing Luo

et al.

Cell Research, Journal Year: 2018, Volume and Issue: 28(8), P. 803 - 818

Published: May 29, 2018

Tissue clearing technique enables visualization of opaque organs and tissues in 3-dimensions (3-D) by turning tissue transparent. Current methods are restricted limited types that can be cleared with each individual protocol, which inevitably led to the presence blind-spots within whole body or parts imaging. Hard including bones teeth still most difficult cleared. In addition, loss endogenous fluorescence remains a major concern for solvent-based methods. Here, we developed polyethylene glycol (PEG)-associated solvent system (PEGASOS), rendered nearly all transparent preserved fluorescence. Bones could turned invisible after clearing. The PEGASOS method adult mouse were able image an head composed bones, teeth, brain, muscles, other no blind areas. transparency enabled us reconstruct intact mandible, femur, knee joint 3-D. managed brain at sub-cellular resolution trace neurons axons over long distance. We also visualized dorsal root ganglions directly through vertebrae. Finally, revealed distribution pattern neural network 3-D marrow space bone. These results suggest is useful tool general biomedical research.

Language: Английский

Citations

331

Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents DOI Creative Commons
Kazuki Tainaka, Tatsuya C. Murakami, Etsuo A. Susaki

et al.

Cell Reports, Journal Year: 2018, Volume and Issue: 24(8), P. 2196 - 2210.e9

Published: Aug. 1, 2018

We describe a strategy for developing hydrophilic chemical cocktails tissue delipidation, decoloring, refractive index (RI) matching, and decalcification, based on comprehensive profiling. More than 1,600 chemicals were screened by high-throughput evaluation system each process. The profiling revealed important factors: salt-free amine with high octanol/water partition-coefficient (logP) N-alkylimidazole aromatic amide RI protonation of phosphate ion decalcification. strategic integration optimal provided series CUBIC (clear, unobstructed brain/body imaging computational analysis) protocols, which efficiently clear mouse organs, body including bone, even large primate human tissues. updated protocols are scalable reproducible, they enable three-dimensional the mammalian This represents future paradigm rational design clearing that can be used

Language: Английский

Citations

302

A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing DOI
Tatsuya C. Murakami, Tomoyuki Mano,

Shu Saikawa

et al.

Nature Neuroscience, Journal Year: 2018, Volume and Issue: 21(4), P. 625 - 637

Published: March 1, 2018

Language: Английский

Citations

276

Whole-Body Profiling of Cancer Metastasis with Single-Cell Resolution DOI Creative Commons
Shimpei I. Kubota, Kei Takahashi, Jun Nishida

et al.

Cell Reports, Journal Year: 2017, Volume and Issue: 20(1), P. 236 - 250

Published: July 1, 2017

Highlights•RI-optimized CUBIC protocol enables whole-body examination of cancer models•CUBIC is applicable to analysis micrometastases at single-cell resolution•CUBIC bridges the resolution gap between in vivo imaging and histology•CUBIC-cancer useful for profiling biological processes whole organsSummaryStochastic proliferative events initiated from a single cell can disrupt homeostatic balance lead fatal disease such as metastasis. To overcome metastasis, it necessary detect quantify sparsely distributed metastatic cells throughout body early stages. Here, we demonstrate that clear, unobstructed brain/body cocktails computational (CUBIC)-based (CUBIC-cancer) with refractive index (RI)-optimized comprehensive organs. We applied CUBIC-cancer 13 mouse models using nine lines spatiotemporal quantification progression resolution. suggests epithelial-mesenchymal transition promotes not only extravasation but also survival sites. pharmacotherapeutic anti-tumor drugs. compatible bioluminescence 2D histology. suggest scalable analytical pipeline these three modalities may contribute addressing currently incurable diseases.Graphical abstract

Language: Английский

Citations

233

FDISCO: Advanced solvent-based clearing method for imaging whole organs DOI Creative Commons
Yisong Qi, Tingting Yu, Jianyi Xu

et al.

Science Advances, Journal Year: 2019, Volume and Issue: 5(1)

Published: Jan. 4, 2019

We developed an advanced clearing method with superior fluorescence-preserving capability for 3D imaging of whole organs.

Language: Английский

Citations

223

Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy DOI Creative Commons
Hiroki R. Ueda, Hans‐Ulrich Dodt, Pavel Osten

et al.

Neuron, Journal Year: 2020, Volume and Issue: 106(3), P. 369 - 387

Published: May 1, 2020

Language: Английский

Citations

199

High-dimensional cell-level analysis of tissues with Ce3D multiplex volume imaging DOI
Weizhe Li, Ronald N. Germain, Michael Y. Gerner

et al.

Nature Protocols, Journal Year: 2019, Volume and Issue: 14(6), P. 1708 - 1733

Published: April 26, 2019

Language: Английский

Citations

154

Tissue clearing DOI
Douglas S. Richardson, Webster Guan, Katsuhiko Matsumoto

et al.

Nature Reviews Methods Primers, Journal Year: 2021, Volume and Issue: 1(1)

Published: Dec. 16, 2021

Language: Английский

Citations

109