NAD_MCNN: Combining Protein Language Models and Multiwindow Convolutional Neural Networks for Deacetylase NAD+ Binding Site Prediction DOI
Van‐The Le, Yuchen Liu,

Yan‐Yun Chang

et al.

Chemical Biology & Drug Design, Journal Year: 2025, Volume and Issue: 105(4)

Published: April 1, 2025

Sirtuins, a class of NAD+ -dependent deacetylases, play key role in aging, metabolism, and longevity. Their interaction with at the catalytic site is crucial for function, but experimental methods to map binding sites are time consuming. To address this, we developed computational method integrating pretrained protein language models multiwindow convolutional neural networks (CNNs). This captures sequence information diverse local patterns, achieving state-of-the-art performance, AUC 0.9733 human sirtuin proteins 0.9701 other NAD-dependent deacylation enzymes. These findings offer insights into sirtuins aging their broader biological functions while providing new path identifying therapeutic targets aging-related diseases.

Language: Английский

AdipoRon ameliorates chronic ethanol induced cardiac necroptosis by reducing ceramide mediated mtROS DOI

Yile Qian,

Yanyu Qi,

Junyi Lin

et al.

Free Radical Biology and Medicine, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

Language: Английский

Citations

1

SIRT3 attenuates doxorubicin-induced cardiotoxicity by inhibiting NLRP3 inflammasome via autophagy DOI

Zhengzhu Sun,

Chongfeng Fang,

Shasha Xu

et al.

Biochemical Pharmacology, Journal Year: 2022, Volume and Issue: 207, P. 115354 - 115354

Published: Nov. 24, 2022

Language: Английский

Citations

31

Exogenous NADPH exerts a positive inotropic effect and enhances energy metabolism via SIRT3 in pathological cardiac hypertrophy and heart failure DOI Creative Commons
Ke Qian, Jie Tang, Yuejuan Ling

et al.

EBioMedicine, Journal Year: 2023, Volume and Issue: 98, P. 104863 - 104863

Published: Nov. 9, 2023

BackgroundTherapies are urgently required to ameliorate pathological cardiac hypertrophy and enhance function in heart failure. Our preliminary experiments have demonstrated that exogenous NADPH exhibits a positive inotropic effect on isolated heart. This study aims investigate the effects of failure, as well underlying mechanisms involved.MethodsEndogenous plasma contents were determined patients with chronic failure control adults. The investigated toad or rat isoproterenol (ISO)–induced transverse aortic constriction (TAC)–induced studied using SIRT3 knockout mice, echocardiography, Western blotting, transmission electron microscopy, immunoprecipitation.FindingsThe endogenous content blood animals was significantly reduced compared age-sex matched subjects. Exogenous showed normal failing hearts, while antagonism ATP receptor partially abolished NADPH. administration weight indices, improved mice increased expression activity, deacetylated target proteins, mitochondrial facilitated production hypertrophic myocardium. Importantly, inhibition NADPH, anti-heart Knockout mice.InterpretationExogenous shows improves energy metabolism via thus may be one potential candidates for treatment failure.FundingThis work supported by grants from National Natural Science Foundation China (No. 81973315, 82173811, 81730092), Jiangsu Higher Education (20KJA310008), Key Laboratory Neuropsychiatric Diseases (BM2013003) Priority Academic Program Development Institutes (PAPD).

Language: Английский

Citations

20

SIRT3 regulates mitochondrial function: A promising star target for cardiovascular disease therapy DOI Creative Commons
Qin Zhang, Siyuan Zhou, Xing Chang

et al.

Biomedicine & Pharmacotherapy, Journal Year: 2023, Volume and Issue: 170, P. 116004 - 116004

Published: Dec. 11, 2023

Dysregulation of mitochondrial homeostasis is common to all types cardiovascular diseases. SIRT3 regulates apoptosis and autophagy, material energy metabolism, oxidative stress, inflammation, fibrosis. As an important mediator node in the network mechanisms, essential many activities. This review explains how tricarboxylic acid cycle treat A novel description impact lifestyle factors on expression from angles nutrition, exercise, temperature provided.

Language: Английский

Citations

19

SIRT3 promotes metabolic maturation of human iPSC-derived cardiomyocytes via OPA1-controlled mitochondrial dynamics DOI Creative Commons
Rui Wang, Hao Xu, Bin Tan

et al.

Free Radical Biology and Medicine, Journal Year: 2022, Volume and Issue: 195, P. 270 - 282

Published: Dec. 31, 2022

The metabolic patterns and energetics of human induced pluripotent stem cell-derived cardiomyocytes (HiPSC-CMs) are much less than those normal adult cardiomyocytes, which has limited their application in disease therapy regenerative medicine. It been demonstrated that SIRT3, a mitochondria-target deacetylase, controls mitochondrial metabolism physiological pathological conditions. In this research, We investigated the role regulatory mechanism SIRT3 energy HiPSC-CMs. found expression was increased during differentiation maturation Knocking down impaired structure, respiration capacity, fatty acid oxidation but enhanced glycolysis. However, honokiol, pharmacological activator improved ultrastructure energetics, promoted oxidative phosphorylation Furthermore, regulated acetylation OPA1, knockdown OPA1 blocked promotion by meanwhile, knocking fusion, were reversed M1 (a fusion promoter) summary, remodeling targeting OPA1-controlled dynamics HiPSC-CMs, may have revelatory implications treatment cardiovascular diseases HiPSC-CMs to

Language: Английский

Citations

24

AGO2 Protects Against Diabetic Cardiomyopathy by Activating Mitochondrial Gene Translation DOI Open Access

Jiabing Zhan,

Kunying Jin,

Rong Xie

et al.

Circulation, Journal Year: 2023, Volume and Issue: 149(14), P. 1102 - 1120

Published: Dec. 21, 2023

Diabetes is associated with cardiovascular complications. microRNAs translocate into subcellular organelles to modify genes involved in diabetic cardiomyopathy. However, functional properties of AGO2 (Argonaute2), a core member miRNA machinery, remain elusive.

Language: Английский

Citations

13

Research progress on the role and mechanism of Sirtuin family in doxorubicin cardiotoxicity DOI
Xuan Zhang, Chaoming Huang,

Yanhong Hou

et al.

Phytomedicine, Journal Year: 2024, Volume and Issue: 129, P. 155673 - 155673

Published: April 22, 2024

Language: Английский

Citations

5

The role of polyphenols in modulating mitophagy: Implications for therapeutic interventions DOI Creative Commons
Xinyu Lin, Wenkai Liu, Xizhuo Hu

et al.

Pharmacological Research, Journal Year: 2024, Volume and Issue: 207, P. 107324 - 107324

Published: July 24, 2024

This review rigorously assesses the burgeoning research into role of polyphenols in modulating mitophagy, an essential cellular mechanism for targeted removal impaired mitochondria. These natural compounds, known their low toxicity, are underscored potential therapeutic strategies against a diverse array diseases, such as neurodegenerative, cardiovascular, and musculoskeletal disorders. The analysis penetrates deeply molecular mechanisms whereby promote particularly by influencing crucial signaling pathways transcriptional regulators, including phosphatase tensin homolog (PTEN) induced putative kinase 1 (PINK1)/parkin forkhead box O3 (FOXO3a) pathways. Noteworthy discoveries include neuroprotective properties resveratrol curcumin, which affect both autophagic mitochondrial dynamics, pioneering integration with other substances to amplify effectiveness. Furthermore, confronts issue polyphenol bioavailability emphasizes imperative clinical trials corroborate viability. By delivering exhaustive synthesis contemporary insights recent advancements mitophagy research, this endeavors catalyze additional foster creation innovative modalities that exploit distinctive attributes manage prevent disease.

Language: Английский

Citations

5

5-Methoxytryptophan Attenuates Oxidative Stress-Induced Downregulation of PINK1 and Mitigates Mitochondrial Damage and Apoptosis in Cardiac Myocytes DOI
Chi‐Ming Lee, Tsu‐Ming Chien,

Juo-Shan Wang

et al.

Free Radical Biology and Medicine, Journal Year: 2025, Volume and Issue: unknown

Published: March 1, 2025

Language: Английский

Citations

0

Differential impact of doxorubicin dose on cell death and autophagy pathways during acute cardiotoxicity DOI

Philip Kawalec,

Matthew D. Martens, Jared T. Field

et al.

Toxicology and Applied Pharmacology, Journal Year: 2022, Volume and Issue: 453, P. 116210 - 116210

Published: Aug. 24, 2022

Language: Английский

Citations

19