Xanthoceras
sorbifolium
is
a
crucial
oil
tree
species
in
northern
China.
Additionally,
fatty
acid
constituents
its
fruits
possess
remarkable
medicinal
value.
Hence,
probing
the
regulatory
role
of
FAD
family
members
components
accumulation
X.
crucial.
Drawing
on
genome
data,
22
XsFAD
distributed
across
10
chromosomes
were
identified.
The
physicochemical
properties
and
subcellular
localization
predictions
thereof
analyzed.
Phylogenetic
conserved
domain
analyses
demonstrated
that
same
subfamily
are
highly
both
gene
structure
domains.
Cis-acting
element
analysis
indicated
susceptible
to
light.
Furthermore,
transcriptome
data
qRT-PCR
findings
corroborated
play
an
active
fruit
ripening
metabolism.
bioinformatic
preliminary
verification
functions
establish
conditions
for
in-depth
research
key
future.
study
will
be
conducive
determine
acids
substances
screening
germplasm
resources
with
superior
traits.
Horticultural Plant Journal,
Journal Year:
2024,
Volume and Issue:
unknown
Published: May 1, 2024
Rosa
banksiae,
known
as
Lady
Banks'
rose,
is
a
perennial
ornamental
crop
and
versatile
herb
in
traditional
Chinese
medicine.
Given
the
lack
of
genomic
resources,
we
assembled
HiFi
Nanopore
sequencing-derived
458.58
Mb
gap-free
telomere-to-telomere
high-quality
R.
banksiae
genome
with
scaffold
N50
=
63.90
Mb.
The
exhibited
no
lineage-specific
whole-genome
duplication
compared
other
Rosaceae.
phylogenomic
analysis
13
Rosaceae
Arabidopsis
through
comparative
genomics
study
showed
that
numerous
gene
families
were
both
before
after
diversification
Some
these
genes
are
candidates
for
new
have
evolved
from
parental
fusion
events.
Fusion
divided
into
three
types:
Type-I
Type-II
contain
two
generated
by
duplication,
distributed
same
different
regions
genome,
respectively;
Type-III
can
only
be
detected
one
gene.
Here,
found
to
more
relaxed
selection
pressure
lower
Ks
values
than
Type-II,
indicating
newly
may
play
important
roles
driving
phenotypic
evolution.
Functional
formed
regulate
phenotype
traits
plant
growth
development,
suggesting
functional
significance
genes.
This
identifies
could
responsible
evolution
provides
information
on
evolutionary
history
recently
diverged
species
genus.
Our
data
represents
major
progress
understanding
pattern
an
invaluable
resource
studies
plants.
Agronomy,
Journal Year:
2025,
Volume and Issue:
15(4), P. 906 - 906
Published: April 5, 2025
Soybean,
an
economically
valuable
oil
and
protein
crop,
is
vulnerable
to
numerous
biotic
stresses
throughout
its
growth
period.
Soybean
mosaic
virus
(SMV),
a
destructive
plant
pathogen,
induces
substantial
yield
reduction
seed
quality
deterioration
globally.
In
China,
total
of
22
distinct
SMV
strains
have
been
documented,
with
SMV-SC4
being
widely
spread
strain.
The
Chinese
cultivar
Kefeng-1
(KF)
resistant
this
To
investigate
the
resistance
mechanism,
transcriptional
analysis
was
performed
at
0,
6,
24,
48
h
post-inoculation
SC4
in
KF
(Resistant)
NN1138-2
(NN)
(Susceptible).
A
1201
core
differentially
expressed
genes
(DEGs)
were
identified
as
active
ones
against
infection,
most
originating
from
early
infection
stages.
Gene
ontology
enrichment
indicated
that
DEGs
directly
involved
signal
transduction
those
related
stress
response
contributed
indirectly,
including
phosphorylation,
kinase
activity,
oxidation–reduction,
oxidoreductase
catalytic
metal
ion
transport,
auxin.
27
“Signal
transduction”
them
disease
conserved
domains,
52
activity
involving
removing
ROS
attack,
8
“Response
auxin”,
phytohormone
plays
role
addition
development.
These
more
versus
susceptible
cultivar.
Our
findings
provide
insights
into
molecular
networks
soybean
SMV,
which
may
be
relevant
understanding
viral
infections.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: May 5, 2024
Sugar
beet
(Beta
vulgaris
L.)
is
a
global
source
for
table
sugar
and
animal
fodder.
Here
we
report
highly
contiguous
haplotype
phased
genome
assembly
annotation
line
FC309.
Both
assembled
haplomes
FC309
represent
the
largest
most
genomes
reported
to
date,
as
well
gene
annotations
sets
that
capture
over
1500
additional
protein-coding
loci
compared
prior
annotations.
These
new
genomic
resources
were
used
identify
novel
quantitative
trait
(QTL)
Fusarium
Yellows
resistance
from
genetic
background
using
an
F2
mapping-by-sequencing
approach.
The
highest
QTL
signals
detected
on
Chromosome
3,
spanning
approximately
10
Mbp
in
both
haplomes.
A
parallel
transcriptome
profiling
experiment
identified
candidate
genes
within
3
with
plausible
roles
disease
response,
including
NBS-LRR
expression
trends
suggestive
of
their
role
causal
genes.
Collectively,
presented
here
be
foundational
tool
comparative
genomics,
m
mapping
other
traits
background,
reference
studies
due
its
contiguity,
completeness,
high-quality
Research Square (Research Square),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Oct. 14, 2024
Abstract
The
Middle
American
rust
resistance
gene
Ur-11
present
in
common
bean
(Phaseolus
vulgaris
L.)
confers
to
all
but
one
known
race
of
the
pathogen
Uromyces
appendiculatus
(Pers.)
Unger.
Even
though
progress
has
been
made
understanding
host-pathogen
interactions
between
and
U.
appendiculatus,
causal
alleles
majority
loci,
including
Ur-11,
remain
unknown.
A
genome-wide
association
study
(GWAS)
was
conducted
identify
genomic
regions
associated
with
31
−
22,
which
is
avirulent
virulent
other
genes.
GWAS
using
genotypic
data
consisting
approximately
71k
SNP
markers
phenotypic
based
on
median
reaction
type
(1
9
scale)
a
panel
350
breeding
lines
cultivars,
plus
12
germplasm
locus
derived
from
PI
181996,
located
chromosome
Pv11.
Twenty-seven
clustered
55.16–55.56
Mb
region
P.
UI111
reference.
Multiple
DNA
sequence
alignments
detected
missense
mutation
[c.1,328A
>
G]
PvUI111.11G202400
model
that
encodes
leucine-rich
repeat-containing
protein
response
20.
PCR
allele
competitive
extension
marker
(PACE)
developed
tested
across
~
650
dry
genotypes.
No
recombination
event
observed
for
among
genotypes;
suggesting
polymorphism
it
very
close
or
gene.
This
will
be
useful
reliable
marker-assisted
selection.
DNA Research,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Nov. 26, 2024
Abstract
Sugar
beet
(Beta
vulgaris
L.)
is
a
global
source
for
table
sugar
and
animal
fodder.
Here
we
report
highly
contiguous,
haplotype
phased
genome
assembly
annotation
line
FC309.
Both
assembled
haplomes
FC309
represent
the
largest
most
contiguous
genomes
reported
to
date,
as
well
gene
annotations
sets
that
capture
over
1500
additional
protein-coding
loci
compared
prior
annotations.
These
new
genomic
resources
were
used
identify
novel
quantitative
trait
(QTL)
Fusarium
yellows
resistance
from
genetic
background
using
an
F2
mapping-by-sequencing
approach.
The
highest
QTL
signals
detected
on
Chromosome
3,
spanning
approximately
10Mbp
in
both
haplomes.
A
parallel
transcriptome
profiling
experiment
identified
candidate
genes
within
3
with
plausible
roles
disease
response,
including
NBS-LRR
expression
trends
supporting
role
resistance.
Investigation
of
variants
these
found
one
major
protein
containing
high
effect
interest.
Collectively,
presented
here
be
foundational
tool
comparative
genomics,
mapping
other
traits
background,
reference
studies
due
its
contiguity,
completeness,
high-quality
