High soilpHenhances the network interactions among bacterial and archaeal microbiota in alpine grasslands of the Tibetan Plateau DOI
Beibei Chen, Shuo Jiao,

Shuaiwei Luo

et al.

Environmental Microbiology, Journal Year: 2020, Volume and Issue: 23(1), P. 464 - 477

Published: Nov. 20, 2020

Soil functions and processes are driven by complex microbial interactions. It is, therefore, critical to understand the coexistence patterns of soil microbiota, especially in fragile alpine ecosystems. We identified biogeographic network-level topological features co-occurrence network Tibetan grasslands, based on high-throughput sequencing. verified that pH was most important environmental variable for predicting networks. Associations among microbiota were enhanced with increasing (5.17-8.92), stable at neutral pH. Moreover, node-level suggested archaeal operational taxonomic units, compared bacterial hold a central role network. Network-level revealed closer connections steppe ecosystem than meadow ecosystem. Therefore, our study demonstrated served as filter influenced potential associations ecological signature grasslands. These findings provide new perspective distinct networks, explore thus help manage communities provisioning services.

Language: Английский

Soil multitrophic network complexity enhances the link between biodiversity and multifunctionality in agricultural systems DOI
Shuo Jiao, Yahai Lu, Gehong Wei

et al.

Global Change Biology, Journal Year: 2021, Volume and Issue: 28(1), P. 140 - 153

Published: Oct. 7, 2021

Belowground biodiversity supports multiple ecosystem functions and services that humans rely on. However, there is a dearth of studies exploring the determinants biodiversity-ecosystem function (BEF) relationships, particularly in intensely managed agricultural ecosystems. Here, we reported significant positive relationships between soil organism groups 228 fields, relating to crop yield, nutrient provisioning, element cycling, pathogen control. The were influenced by types organisms phylotypes with larger sizes or at higher trophic levels, for example, invertebrates protist predators, appeared exhibit weaker no BEF when compared those smaller lower archaea, bacteria, fungi, phototrophs. Particularly, highlighted role network complexity, reflected co-occurrence patterns among multitrophic-level organisms, enhancing link functions. Our results represent advance forecasting impacts belowground multitrophic on systems, suggest complexity should be considered key factor productivity sustainability under land-use intensification.

Language: Английский

Citations

259

Crop cover is more important than rotational diversity for soil multifunctionality and cereal yields in European cropping systems DOI
Gina Garland, Anna Edlinger, Samiran Banerjee

et al.

Nature Food, Journal Year: 2021, Volume and Issue: 2(1), P. 28 - 37

Published: Jan. 13, 2021

Language: Английский

Citations

185

Soil Microbial Biogeography in a Changing World: Recent Advances and Future Perspectives DOI Creative Commons
Haiyan Chu, Gui‐Feng Gao,

Yuying Ma

et al.

mSystems, Journal Year: 2020, Volume and Issue: 5(2)

Published: April 20, 2020

Soil microbial communities are fundamental to maintaining key soil processes associated with litter decomposition, nutrient cycling, and plant productivity thus integral human well-being. Recent technological advances have exponentially increased our knowledge concerning the global ecological distributions of across space time provided evidence for their contribution ecosystem functions. However, major gaps in biogeography remain be addressed over coming years as technology research questions continue evolve. In this minireview, we state recent future directions study discuss need a clearer concept species, projections toward change scenarios, importance embracing culture isolation approaches determine functional profiles. This will critical better predict functions changing world.

Language: Английский

Citations

141

Environmental adaptation is stronger for abundant rather than rare microorganisms in wetland soils from the Qinghai‐Tibet Plateau DOI
Wenjie Wan, Geoffrey Michael Gadd, Yuyi Yang

et al.

Molecular Ecology, Journal Year: 2021, Volume and Issue: 30(10), P. 2390 - 2403

Published: March 14, 2021

Disentangling the biogeographic patterns of rare and abundant microbes is essential in order to understand generation maintenance microbial diversity with respect functions they provide. However, little known about ecological assembly processes environmental adaptation across large spatial-scale wetlands. Using Illumina sequencing multiple statistical analyses, we characterized taxonomic phylogenetic bacteria fungi Qinghai-Tibet Plateau wetland soils. Abundant taxa exhibited broader thresholds stronger signals for traits than ones. By contrast, showed higher sensitivity changes closer clustering The null model analysis revealed that dispersal limitation belonging stochastic process dominated community assemblies bacteria, fungi, while variable selection deterministic governed bacteria. Neutral variation partitioning further confirmed were less environmentally constrained. Soil ammonia nitrogen was crucial factor mediating balance between stochasticity determinism both microbes. may have better potential are dispersed by Our findings extend knowledge ongoing change could facilitate prediction biodiversity loss caused probably climate human activity

Language: Английский

Citations

130

Coexistence patterns of soil methanogens are closely tied to methane generation and community assembly in rice paddies DOI Creative Commons
Dong Li,

Haowei Ni,

Shuo Jiao

et al.

Microbiome, Journal Year: 2021, Volume and Issue: 9(1)

Published: Jan. 22, 2021

Soil methanogens participate in complex interactions, which determine the community structures and functions. Studies continue to seek coexistence patterns of soil methanogens, influencing factors contribution methane (CH4) production, are regulated primarily by species functional significance these interactions. Here, emissions were measured rice paddies across Asian continent, interactions involved methanogenic archaeal communities represented as pairwise links co-occurrence networks.The network topological properties, positively correlated with mean annual temperature, most important predictor CH4 among all biotic abiotic factors. The groups commonly co-occurring 39 local networks contributed emission (53.3%), much higher than endemic (36.8%). potential keystone taxa, belonging Methanobacterium, Methanocella, Methanothrix, Methanosarcina, possessed high linkages generation genes mcrA, fwdB, mtbA, mtbC. Moreover, coexisting taxa showed a very different assembly pattern, ~ 30% determinism 70% stochasticity. In contrast, proportion stochasticity (93~99%) characterized endemically taxa.These results suggest that microbes closely tied their significance, importance common further imply may contribute more diversity Video abstract.

Language: Английский

Citations

107

Core phylotypes enhance the resistance of soil microbiome to environmental changes to maintain multifunctionality in agricultural ecosystems DOI Creative Commons
Shuo Jiao, Jiejun Qi,

Chujie Jin

et al.

Global Change Biology, Journal Year: 2022, Volume and Issue: 28(22), P. 6653 - 6664

Published: Aug. 13, 2022

Agricultural ecosystems are facing increasing environmental changes. Revealing ecological stability of belowground organisms is key to developing management strategies that maintain agricultural ecosystem services in a changing world. Here, we collected soils from adjacent pairs maize and rice fields along large spatial scale across Eastern Southeast China investigate the importance core microbiota as predictor resistance soil microbiome (e.g. bacteria, fungi protist) climate changes nutrient fertilization, their effect on multiple functions, representing for crop growth health agro-ecosystems. Soil exhibited stronger than soils, by considering aspects index, example, community, phylogenetic conservation network complexity. Community showed geographic pattern, with higher at lower latitudes, suggesting warmer regions. Particularly, highlighted role phylotypes enhancing community microbiome, which was essential maintenance multifunctionality ecosystems. Our results represent significant advance linking therefore forecasting agro-ecosystems dynamics response ongoing These suggest should be considered factor sustainability productivity under global change scenarios.

Language: Английский

Citations

101

Microbial resistance in rhizosphere hotspots under biodegradable and conventional microplastic amendment: Community and functional sensitivity DOI
Bin Song,

Siyi Shang,

Feng Cai

et al.

Soil Biology and Biochemistry, Journal Year: 2023, Volume and Issue: 180, P. 108989 - 108989

Published: Feb. 24, 2023

Language: Английский

Citations

65

Fertilization changes soil microbiome functioning, especially phagotrophic protists DOI
Zhi-Bo Zhao, Ji‐Zheng He, Zhi Quan

et al.

Soil Biology and Biochemistry, Journal Year: 2020, Volume and Issue: 148, P. 107863 - 107863

Published: May 24, 2020

Language: Английский

Citations

112

Biogeography and diversity patterns of abundant and rare bacterial communities in rice paddy soils across China DOI

Jinyu Hou,

Longhua Wu,

Wuxing Liu

et al.

The Science of The Total Environment, Journal Year: 2020, Volume and Issue: 730, P. 139116 - 139116

Published: May 4, 2020

Language: Английский

Citations

86

Linking phylogenetic niche conservatism to soil archaeal biogeography, community assembly and species coexistence DOI
Shuo Jiao, Weimin Chen, Gehong Wei

et al.

Global Ecology and Biogeography, Journal Year: 2021, Volume and Issue: 30(7), P. 1488 - 1501

Published: May 19, 2021

Abstract Aim A predictive understanding of the mechanisms underlying microbial biogeographical patterns is great interest, particularly with respect to phylogenetic distributions their ecological adaptations. Here, we test whether information can predict distributions, community assembly and species co‐occurrence soil archaea. Location Northern China. Time period July August 2017. Major taxa studied Archaeal communities. Methods By conducting a large‐scale (transect intervals 1,257.6 km) study across agricultural field, forest, wetland, grassland desert biomes, applied framework niche conservatism investigate archaeal biogeography, network topology. We examined signal based on Blomberg's K environmental preference given taxon was related phylogeny, corresponding degree for niches complex gradients. evaluated processes communities null model Sloan neutral analyses. then explored major factors that influenced coexistence Results Soil exhibited strong climate‐related preferences. Mean annual precipitation (MAP) had strongest signal, this mediated both coexistence, stronger deterministic less in environments lower precipitation. Phylogenetic diversity closely linked balance processes; is, stochastic were dominant low‐diversity communities, whereas variable selection promoted high diversity. Main conclusions conclude archaea drives distributions. Our findings represent considerable advance linking therefore forecasting evolutionary adaptations response ongoing changes.

Language: Английский

Citations

77