Scientific Reports,
Journal Year:
2023,
Volume and Issue:
13(1)
Published: July 25, 2023
Abstract
Astyanax
mexicanus
is
a
well-known
model
species,
that
has
two
morphotypes,
cavefish,
from
subterranean
rivers
and
surface
fish,
rivers.
They
are
morphologically
distinct
due
to
many
troglomorphic
traits
in
the
such
as
absence
of
eyes.
Most
studies
on
A
.
focused
eye
development
protein-coding
genes
involved
process.
However,
lncRNAs
did
not
get
same
attention
very
little
known
about
them.
This
study
aimed
fill
this
knowledge
gap,
identifying,
describing,
classifying,
annotating
expressed
embryo’s
tissue
cavefish
fish.
To
do
so,
we
constructed
concise
workflow
assemble
evaluate
transcriptomes,
annotate
genes,
ncRNAs
families,
predict
coding
potential,
identify
putative
lncRNAs,
map
them
interactions.
approach
resulted
identification
33,069
19,493
respectively
mapped
Thousands
these
were
annotated
identified
conserved
human
several
species
Hundreds
validated
silico,
through
ESTs.
We
associated
with
related
development.
case
few
sox2
,
which
suggest
being
isomorphs
SOX2-OT
lncRNA
can
regulate
expression
work
one
first
focus
description
highlighting
targets
opening
an
important
precedent
for
future
focusing
Zebrafish,
Journal Year:
2023,
Volume and Issue:
20(2), P. 86 - 94
Published: April 1, 2023
Animal
model
systems
are
dependent
on
the
standardization
of
husbandry
protocols
that
maximize
growth
and
reduce
generation
time.
The
Mexican
tetra,
Astyanax
mexicanus,
exists
as
eyed
surface
blind
cave
dwelling
populations.
opportunity
for
comparative
approaches
between
independently
evolved
populations
has
led
to
rapid
A.
mexicanus
a
evolution
biomedical
research.
However,
slow
inconsistent
rate
remains
major
limitation
expanded
application
mexicanus.
Fortunately,
this
temporal
can
be
addressed
through
changes
accelerate
rates
while
maintaining
optimal
health
outcomes.
Here,
we
describe
protocol
produces
in
diet,
feeding
frequency,
sorting
progressive
tank
size.
This
produced
robust
decreased
age
sexual
maturity
comparison
our
previous
protocol.
To
determine
whether
impacted
behavior,
tested
fish
exploration
schooling
assays.
We
found
no
difference
behavior
two
groups,
suggesting
increased
will
not
impact
natural
variation
behavioral
traits.
Taken
together,
standardized
development
genetic
model.
PLoS ONE,
Journal Year:
2022,
Volume and Issue:
17(4), P. e0265894 - e0265894
Published: April 6, 2022
Fish
display
a
remarkable
diversity
of
social
behaviors,
both
within
and
between
species.
While
behaviors
are
likely
critical
for
survival,
surprisingly
little
is
known
about
how
they
evolve
in
response
to
changing
environmental
pressures.
With
its
highly
surface
form
multiple
populations
largely
asocial,
blind,
cave-dwelling
form,
the
Mexican
tetra,
Astyanax
mexicanus
,
provides
powerful
model
study
evolution
behavior.
Here
we
use
motion
tracking
analysis
swimming
kinematics
quantify
four
populations.
In
light,
fish
school,
maintaining
close
proximity
alignment
with
each
other.
dark,
no
longer
coherent
schools,
however,
still
show
evidence
an
attempt
align
maintain
when
find
themselves
near
another
fish.
contrast,
cavefish
from
three
independently-evolved
(Pachón,
Molino,
Tinaja)
preference
or
alignment,
instead
exhibiting
that
suggest
active
avoidance
Two
cave
studied
also
slow
down
more
present
tank,
behavior
which
not
observed
light
suggesting
divergent
responses
conspecifics.
Using
data-driven
computer
simulations,
reduction
speed
sufficient
alter
way
explore
their
environment:
it
can
increase
time
spent
exploring
away
walls.
Thus,
absence
schooling
merely
consequence
inability
see,
but
may
rather
be
genuine
behavioral
adaptation
impacts
environment.
Animals
are
adapted
to
their
natural
habitats
and
lifestyles.
Their
brains
perceive
the
external
world
via
sensory
systems,
compute
information
together
with
that
of
internal
states
autonomous
activity,
generate
appropriate
behavioral
outputs.
However,
how
do
these
processes
evolve
across
evolution?
Here,
focusing
on
sense
olfaction,
we
have
studied
evolution
in
olfactory
sensitivity,
preferences,
responses
six
different
food-related
amino
acid
odors
two
eco-morphs
fish
Astyanax
mexicanus
.
To
this
end,
developed
a
high-throughput
setup
pipeline
quantitative
qualitative
behavior
analysis,
tested
489
six-week-old
larvae.
The
blind,
dark-adapted
morphs
species
showed
markedly
distinct
basal
swimming
patterns
odors,
higher
strong
preference
for
alanine,
as
compared
river-dwelling
eyed
conspecifics.
In
addition,
discovered
an
individual
‘swimming
personality’,
personality
influences
capability
respond
efficiently
find
source.
Importantly,
traits
favored
significant
were
surface
cavefish.
Moreover,
displayed
by
second-generation
cave
×
F2
hybrids
suggested
olfactory-driven
sensitivity
is
genetic
trait.
Our
findings
show
processing
has
rapidly
evolved
cavefish
at
several
levels:
detection
threshold,
odor
preference,
foraging
strategy.
Cavefish
therefore
outstanding
model
understand
genetic,
molecular,
neurophysiological
basis
specialization
response
environmental
change.
Dysregulation
of
sleep
has
widespread
health
consequences
and
represents
an
enormous
burden.
Short-sleeping
individuals
are
predisposed
to
the
effects
neurodegeneration,
suggesting
a
critical
role
for
in
maintenance
neuronal
health.
While
on
cellular
function
not
completely
understood,
growing
evidence
identified
association
between
loss
DNA
damage,
raising
possibility
that
facilitates
efficient
repair.
The
Mexican
tetra
fish,
Astyanax
mexicanus
provides
model
investigate
evolutionary
basis
changes
loss.
Multiple
cave-adapted
populations
these
fish
have
evolved
substantially
less
time
compared
surface
same
species
without
identifiable
impacts
healthspan
or
longevity.
To
whether
is
associated
with
damage
stress,
we
Damage
Response
(DDR)
oxidative
stress
levels
A.
populations.
We
measured
markers
chronic
discovered
elevated
marker
γH2AX
brain,
increased
gut
cavefish,
consistent
deprivation.
Notably,
found
acute
UV-induced
elicited
increase
but
cavefish.
On
transcriptional
level,
only
activated
photoreactivation
repair
pathway
following
UV
damage.
These
findings
suggest
reduction
DDR
cavefish
coincides
examine
pathways
at
created
embryonic
fibroblast
cell
line
from
two
.
observed
both
were
diminished
cells,
corroborating
vivo
response
lost
long-term
impact
changes,
transcriptome
brain
aged
Strikingly,
many
genes
differentially
expressed
young
old
do
transcriptionally
vary
by
age
Taken
together,
developed
resilience
loss,
despite
possessing
hallmarks
Journal of Experimental Biology,
Journal Year:
2020,
Volume and Issue:
223(Suppl_1)
Published: Feb. 1, 2020
ABSTRACT
Neuroscience
has
a
long,
rich
history
in
embracing
unusual
animals
for
research.
Over
the
past
several
decades,
there
been
technology-driven
bottleneck
species
used
neuroscience
However,
an
oncoming
wave
of
technologies
applicable
to
many
hold
promise
enabling
researchers
address
challenging
scientific
questions
that
cannot
be
solved
using
traditional
laboratory
animals.
Here,
we
discuss
how
leveraging
convergent
evolution
physiological
or
behavioral
phenotypes
can
empower
research
mapping
genotype
phenotype
interactions.
We
present
two
case
studies
electric
fish
and
poison
frogs
comparative
work
teach
us
about
evolutionary
constraint
flexibility
at
various
levels
biological
organization.
also
offer
advice
on
potential
pitfalls
establishing
novel
model
systems
Finally,
end
with
discussion
use
charismatic
their
utility
public
outreach.
Overall,
argue
frameworks
help
identify
generalizable
principles
neuroscience.
Current Biology,
Journal Year:
2022,
Volume and Issue:
32(17), P. 3720 - 3730.e3
Published: Aug. 4, 2022
Sensory
systems
display
remarkable
plasticity
and
are
under
strong
evolutionary
selection.
The
Mexican
cavefish,
Astyanax
mexicanus,
consists
of
eyed
river-dwelling
surface
populations
multiple
independent
cave
that
have
converged
on
eye
loss,
providing
the
opportunity
to
examine
evolution
sensory
circuits
in
response
environmental
perturbation.
Functional
analysis
across
transgenic
expressing
GCaMP6s
showed
functional
connectivity
optic
tectum
largely
did
not
differ
between
populations,
except
for
selective
loss
negatively
correlated
activity
within
cavefish
tectum,
suggesting
positively
neural
is
resistant
an
evolved
input
from
retina.
Furthermore,
surface-cave
hybrid
fish
reveals
changes
genetically
distinct
those
encoding
loss.
Together,
these
findings
uncover
components
visual
system
establish
use
imaging
A.
mexicanus
study
circuit
evolution.
Animals
can
evolve
dramatic
sensory
functions
in
response
to
environmental
constraints,
but
little
is
known
about
the
neural
mechanisms
underlying
these
changes.
The
Mexican
tetra,
Astyanax
mexicanus
,
a
leading
model
study
genetic,
behavioral,
and
physiological
evolution
by
comparing
eyed
surface
populations
blind
cave
populations.
We
compared
neurophysiological
responses
of
posterior
lateral
line
afferent
neurons
motor
across
A.
reveal
how
shifts
function
may
shape
behavioral
diversity.
These
studies
indicate
differences
intrinsic
signaling
gain
control
Elevated
endogenous
activity
identified
lower
threshold
cavefish
relative
fish
increased
evoked
potentials
during
hair
cell
deflection
cavefish.
next
measured
effect
inhibitory
corollary
discharges
from
hindbrain
efferent
onto
afferents
locomotion.
discovered
that
three
independently
derived
have
evolved
persistent
locomotion,
suggesting
for
first
time
partial
loss
system
be
an
evolutionary
mechanism
adaptation
vertebrate
system.