BMC Genomics,
Journal Year:
2024,
Volume and Issue:
25(1)
Published: Dec. 24, 2024
STARR-seq
and
other
massively-parallel
reporter
assays
are
widely
used
to
discover
functional
enhancers
in
transfected
cell
models,
which
can
be
confounded
by
plasmid
vector-induced
type-I
interferon
immune
responses
lack
the
multicellular
environment
endogenous
chromatin
state
of
complex
mammalian
tissues.
We
describe
HDI-STARR-seq,
combines
library
delivery
liver,
hydrodynamic
tail
vein
injection
(HDI),
with
RNA
transcriptional
initiation
driven
a
minimal
Albumin
promoter,
we
show
is
essential
for
mouse
liver
enhancer
activity
assayed
7
days
after
HDI.
Importantly,
little
or
no
innate
were
observed.
Comparisons
HDI-STARR-seq
between
male
female
livers
from
males
treated
an
activating
ligand
transcription
factor
(TF)
CAR
(Nr1i3)
identified
many
condition-dependent
linked
condition-specific
gene
expression.
Further,
thousands
active
using
high
complexity
comprised
~
50,000
genomic
regions
released
DNase-I
digestion
nuclei.
When
compared
stringently
inactive
sequences,
sequences
highly
enriched
open
histone
marks
(H3K27ac,
H3K4me1,
H3K4me3),
significantly
closer
start
sites,
depleted
repressive
(H3K27me3,
H3K9me3)
transcribed
region
(H3K36me3).
offers
substantial
improvements
over
current
methodologies
large
scale,
profiling
enhancers,
including
tissue
vivo,
adapted
characterize
activities
variety
species
tissues
selecting
suitable
tissue-
species-specific
promoter
sequences.
Environmental Health,
Journal Year:
2024,
Volume and Issue:
23(1)
Published: April 13, 2024
Abstract
Background
Per-
and
polyfluoroalkyl
substances
(PFAS)
are
known
environmental
contaminants
with
immunosuppressive
properties.
Their
connection
to
rheumatoid
arthritis
(RA),
a
condition
influenced
by
the
immune
system,
is
not
well
studied.
This
research
explores
association
between
PFAS
exposure
RA
prevalence.
Methods
utilized
data
from
NHANES,
encompassing
sample
of
10,496
adults
2003–2018
cycles,
focusing
on
serum
levels
several
PFAS.
The
presence
was
determined
based
self-reports.
study
used
multivariable
logistic
regression
assess
relationship
individual
risk,
adjusting
for
covariates
calculate
odds
ratios
(ORs).
combined
effects
mixtures
were
evaluated
using
BKMR,
WQS
regression,
quantile
g-computation.
Additionally,
sex-specific
associations
explored
through
stratified
analysis.
Results
Higher
PFOA
(OR
=
0.88,
95%
CI:
0.79,
0.98),
PFHxS
0.91,
0.83,
1.00),
PFNA
0.87,
0.77,
PFDA
0.89,
0.81,
0.99)
concentration
related
lower
RA.
Sex-specific
analysis
in
single
chemical
models
indicated
significant
inverse
only
evident
females.
BKMR
did
show
an
obvious
pattern
estimates
across
mixture.
outcomes
sex-stratified
g-computation
demonstrated
that
increase
mixture
associated
decreased
females
(OR:
0.76,
0.62,
0.92).
We
identified
interaction
term
WQS*sex
100
repeated
hold
out
Notably,
higher
significantly
reduced
(mean
OR
0.93,
0.98).
Conclusions
indicates
potential
various
their
observed
relationships
statistically
but
males.
These
findings
contribute
growing
body
evidence
indicating
may
have
effects.
Endocrinology,
Journal Year:
2025,
Volume and Issue:
166(3)
Published: Jan. 27, 2025
Maternal
exposure
to
ozone
during
implantation
results
in
reduced
fetal
weight
gain
rats.
Offspring
from
ozone-exposed
dams
demonstrate
sexually
dimorphic
risks
high-fat
diet
feeding
adolescence.
To
better
understand
the
adolescent
hepatic
metabolic
landscape
following
growth
restriction,
RNA
sequencing
was
performed
characterize
effects
of
ozone-induced
restriction
on
male
and
female
offspring.
Pregnant
Long-Evans
rats
were
exposed
filtered
air
or
0.8
ppm
for
4
hours
both
gestation
days
5
6
(n
=
6/group).
At
approximately
postnatal
day
48,
liver
tissue
obtained
Peri-implantation
dam
had
greater
gene
expression
offspring
than
females.
Interestingly,
heatmaps
these
differentially
expressed
genes
suggested
that
a
transcriptomic
pattern
like
Using
set
highly
female-predominant
390),
57%
upregulated
dams.
Upregulated
canonical
pathways
included
sirtuin
orexin
signaling,
estrogen
receptor
integration
energy
metabolism.
Relatively
few
altered
associated
with
endpoints
sexual
maturity,
signifying
likely
source
observed
feminization
not
attributed
sex
hormones.
This
study
provides
initial
evidence
utero
may
increase
risk
Additional
work
is
needed
further
relationship
between
developmental
undernutrition
liver.
Toxics,
Journal Year:
2025,
Volume and Issue:
13(2), P. 91 - 91
Published: Jan. 25, 2025
Emerging
evidence
indicates
that
environmental
exposure
to
per-
and
polyfluoroalkyl
substances
(PFASs)
may
influence
lipid
metabolism,
though
studies
on
adolescents
remain
scarce.
This
study
aimed
investigate
the
association
between
PFAS
mixture
profiles
in
Korean
adolescents.
Using
data
from
National
Environmental
Health
Survey
(2018–2020),
we
analyzed
824
aged
12–17
years.
Serum
concentrations
of
PFAS,
including
perfluorooctanoic
acid
(PFOA),
perfluorooctane
sulfonic
(PFOS),
perfluorononanoic
(PFNA),
perfluorohexane
(PFHxS),
perfluorodecanoic
(PFDeA),
were
assessed.
In
multivariate
regression
models,
PFDeA
PFNA
positively
associated
with
elevated
total
cholesterol
low-density
lipoprotein
levels,
was
hypercholesterolemia
risk
boys.
girls,
higher
high-density
lower
triglycerides,
no
significant
observed.
Bayesian
kernel
machine
demonstrated
positive
associations
boys
but
not
girls.
The
quantile
g-computation
model
also
an
odds
ratio
(OR)
1.47
(95%
CI:
0.99–2.19,
p
=
0.057)
for
boys,
suggesting
borderline
statistical
significance.
These
findings
suggest
disrupt
elevating
adolescents,
particularly
Environment International,
Journal Year:
2024,
Volume and Issue:
190, P. 108881 - 108881
Published: July 7, 2024
Exposure
to
endocrine
disruptors
during
early
childhood
poses
significant
health
risks.
This
study
examines
the
exposure
levels
of
French
3.5-year-old
children
various
persistent
and
non-persistent
pollutants
pesticides
using
hair
analysis
as
part
ELFE
national
birth
cohort.
Differences
in
sex
geographical
location
among
were
investigated
ppossible
determinants
exposure.
Seminars in Liver Disease,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 21, 2025
Environmental
pollutants
significantly
impact
liver
disease
development,
progression,
and
outcomes.
This
review
examines
the
complex
relationship
between
environmental
exposures
pathology,
from
malignant
conditions
like
hepatocellular
carcinoma
to
steatotic
cholestatic
diseases.
Key
factors
include
air
pollutants,
volatile
organic
compounds,
persistent
heavy
metals,
per-
polyfluoroalkyl
substances.
These
compounds
can
act
through
multiple
mechanisms,
including
endocrine
disruption,
metabolic
perturbation,
oxidative
stress,
direct
hepatotoxicity.
The
of
these
is
often
modified
by
such
as
sex,
diet,
genetic
predisposition.
Recent
research
has
revealed
that
even
low-level
certain
chemicals
affect
health,
particularly
when
combined
with
other
risk
factors.
emergence
exposomics
a
tool
promises
enhance
our
understanding
how
influence
disease.
Importantly,
exposure
effects
vary
demographic
socioeconomic
factors,
highlighting
justice
concerns.
Implementation
this
knowledge
in
clinical
practice
requires
new
diagnostic
approaches,
healthcare
system
adaptations,
increased
awareness
among
medical
professionals.
In
conclusion,
provides
comprehensive
examination
current
evidence
linking
discusses
implications
for
public
health
policy.
Toxicological Sciences,
Journal Year:
2024,
Volume and Issue:
200(2), P. 324 - 345
Published: May 6, 2024
Constitutive
androstane
receptor
(CAR,
Nr1i3),
a
liver
nuclear
and
xenobiotic
sensor,
induces
drug,
steroid,
lipid
metabolizing
enzymes,
stimulates
hypertrophy
hyperplasia,
ultimately,
hepatocellular
carcinogenesis.
The
mechanisms
linking
early
CAR
responses
to
later
disease
development
are
poorly
understood.
Here
we
show
that
exposure
of
CD-1
mice
TCPOBOP
(1,4-bis[2-(3,5-dichloropyridyloxy)]benzene),
halogenated
xenochemical
selective
agonist
ligand,
pericentral
steatosis
marked
by
hepatic
accumulation
cholesterol
neutral
lipid,
elevated
circulating
alanine
aminotransferase,
indicating
hepatocyte
damage.
TCPOBOP-induced
was
weaker
in
the
region
but
stronger
periportal
females
compared
with
males.
Early
(1
day)
transcriptional
were
enriched
for
CAR-bound
primary
response
genes,
lipogenesis
metabolism
oxidative
stress
protection
pathways;
late
(2
weeks)
included
many
binding-independent
secondary
enrichment
macrophage
activation,
immune
response,
cytokine
reactive
oxygen
species
production.
Late
upstream
regulators
specific
TCPOBOP-exposed
male
linked
proinflammatory
carcinoma
progression.
administered
weekly
using
high
corn
oil
vehicle
induced
carbohydrate-responsive
transcription
factor
(MLXIPL)-regulated
target
dysregulated
mitochondrial
respiratory
translation
regulatory
pathways,
more
advanced
pathology.
Overall,
recapitulates
histological
gene
expression
changes
characteristic
emerging
steatotic
disease,
including
nonparenchymal
cells
indicative
transition
state.
Upstream
both
genes
include
novel
biomarkers
foreign
chemical-induced
metabolic
dysfunction-associated
disease.
Molecular and Cellular Biochemistry,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 20, 2024
Abstract
Obesity,
diabetes,
and
their
cardiovascular
hepatic
comorbidities
are
alarming
public
health
issues
of
the
twenty-first
century,
which
share
mitochondrial
dysfunction,
oxidative
stress,
chronic
inflammation
as
common
pathophysiological
mechanisms.
An
increasing
body
evidence
links
combined
exposure
to
multiple
environmental
toxicants
with
occurrence
severity
metabolic
diseases.
Endocrine
disruptors
(EDs)
ubiquitous
chemicals
or
mixtures
persistent
deleterious
effects
on
living
organisms
beyond
endocrine
system
impairment;
in
particular,
those
known
metabolism-disrupting
(MDCs),
increase
risk
pathologies
adult
organism
its
progeny.
Being
largely
lipophilic,
MDCs
mainly
target
adipose
tissue
elicit
dysfunction
by
interfering
bioenergetics,
biogenesis,
dynamics
and/or
other
functions.
Plastics,
when
broken
down
into
micro-
nano-plastics
(MNPs),
have
been
detected
several
human
tissues,
including
liver.
The
harmful
interplay
between
inflammatory
redox
processes,
mutually
interact
a
positive
feed-back
loop,
hence
term
("OxInflammation"),
occurs
both
at
systemic
organ
level.
In
liver
tissue,
oxinflammation
contributes
progression
dysfunction-associated
steatotic
disease
(MASLD).
Moreover,
it
has
reported
that
individuals
MASLD
may
be
more
susceptible
(mainly,
related
mitochondria)
EDs/MDCs
MNPs
play
role
development
disease.
While
systematically
investigated
major
for
ambient
chemicals,
surprisingly,
less
information
is
available
literature
respect
tissue.
this
narrative
review,
we
delve
current
most
studied
(bisphenols,
polychlorinated
biphenyls,
phthalates,
tolylfluanid
tributyltin,
per-fluoroalkyl
polyfluoroalkyl
substances,
heavy
metals
MNPs),
summarize
address
dysregulated
mitochondria
oxinflammation,
particularly
setting
MASLD.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Feb. 20, 2024
Abstract
Constitutive
Androstane
Receptor
(CAR,
Nr1i3
),
a
liver
nuclear
receptor
and
xenobiotic
sensor,
induces
drug,
steroid
lipid
metabolizing
enzymes,
stimulates
hypertrophy
hyperplasia,
ultimately,
hepatocellular
carcinogenesis.
The
mechanisms
linking
early
CAR
responses
to
subsequent
disease
development
are
poorly
understood.
Here
we
show
that
exposure
of
CD-1
mice
TCPOBOP,
halogenated
xenochemical
selective
agonist
ligand,
pericentral
steatosis
marked
by
hepatic
accumulation
cholesterol
neutral
lipid,
elevated
circulating
alanine
aminotransferase
levels,
indicating
hepatocyte
damage.
TCPOBOP-induced
was
weaker
in
the
region
but
stronger
periportal
females
compared
males.
Early
(1-day)
TCPOBOP
transcriptional
were
enriched
for
CAR-bound
primary
response
genes,
metabolism
oxidative
stress
protection
pathways;
late
(2-wk)
included
many
binding-independent
secondary
with
enrichment
immune
response,
macrophage
activation,
cytokine
reactive
oxygen
species
production.
Late
upstream
regulators
specific
TCPOBOP-exposed
male
linked
pro-inflammatory
carcinoma
progression.
administered
weekly
using
high
corn
oil
vehicle
activated
carbohydrate-responsive
transcription
factor
(MLXIPL)-regulated
target
dysregulated
mitochondrial
respiratory
translation
regulatory
pathways,
induced
more
advanced
pathology.
Thus,
recapitulates
histological
gene
expression
changes
characteristic
emerging
steatotic
disease,
including
non-parenchymal
cells
indicative
transition
state.
Upstream
both
include
novel
biomarkers
foreign
chemical-induced
metabolic
dysfunction-associated
disease.