BMC Microbiology,
Journal Year:
2017,
Volume and Issue:
17(1)
Published: Jan. 5, 2017
While
recent
advances
in
next
generation
sequencing
technologies
have
enabled
researchers
to
readily
identify
countless
microbial
species
soil,
rhizosphere,
and
phyllosphere
microbiomes,
the
biological
functions
of
majority
these
are
unknown.
Functional
studies
therefore
urgently
needed
order
characterize
plethora
microorganisms
that
being
identified
point
out
may
be
used
for
biotechnology
or
plant
protection.
Here,
we
a
dual
culture
assay
growth
analyses
characterise
yeasts
(40
different
isolates)
their
antagonistic
effect
on
16
filamentous
fungi;
comprising
pathogens,
antagonists,
saprophytes.
Overall,
this
competition
screen
640
pairwise
combinations
revealed
broad
range
outcomes,
ranging
from
small
stimulatory
effects
some
up
inhibition
more
than
80%
by
individual
species.
On
average,
isolated
soil
suppressed
fungi
strongly
activity
was
species-/isolate-specific
property
not
dependent
fungus
yeast
interacting
with.
The
isolates
with
strongest
were
Metschnikowia
pulcherrima,
Hanseniaspora
sp.,
Cyberlindnera
sargentensis,
Aureobasidium
pullulans,
Candida
subhashii,
Pichia
kluyveri.
Among
these,
(C.
A.
C.
subhashii)
assimilated
and/or
oxidized
di-,
tri-
tetrasaccharides
organic
acids
phyllosphere.
Only
two
subhashii
M.
pulcherrima
able
grow
N-acetyl-glucosamine
as
carbon
source.
assays
physiological
experiments
described
here
known
antagonists
been
implicated
control
pathogenic
past,
but
also
little
characterised
such
subhashii.
metabolically
versatile
Noteworthy
strong
which
had
so
far
only
clinical
sample
studied
respect
biocontrol.
Based
binary
(e.g.,
sources,
root
exudates),
competitive
potential
novel
biocontrol
agent
against
fungi.
Frontiers in Plant Science,
Journal Year:
2018,
Volume and Issue:
9
Published: Oct. 23, 2018
Microbes
of
the
phytomicrobiome
are
associated
with
every
plant
tissue
and,
in
combination
form
holobiont.
Plants
regulate
composition
and
activity
their
bacterial
community
carefully.
These
microbes
provide
a
wide
range
services
benefits
to
plant;
return,
provides
microbial
reduced
carbon
other
metabolites.
Soils
generally
moist
environment,
rich
which
supports
extensive
soil
communities.
The
rhizomicrobiome
is
great
importance
agriculture
owing
diversity
root
exudates
cell
debris
that
attract
diverse
unique
patterns
colonization.
play
key
roles
nutrient
acquisition
assimilation,
improved
texture,
secreting
modulating
extracellular
molecules
such
as
hormones,
secondary
metabolites,
antibiotics
various
signal
compounds,
all
leading
enhancement
growth.
compounds
they
secrete
constitute
valuable
biostimulants
pivotal
stress
responses.
Research
has
demonstrated
inoculating
plants
plant-growth
promoting
rhizobacteria
(PGPR)
or
treating
microbe-to-plant
can
be
an
effective
strategy
stimulate
crop
Furthermore,
these
strategies
improve
tolerance
for
abiotic
stresses
(egs.
drought,
heat,
salinity)
likely
become
more
frequent
climate
change
conditions
continue
develop.
This
discovery
resulted
multifunctional
PGPR-based
formulations
commercial
agriculture,
minimize
use
synthetic
fertilizers
agrochemicals.
review
update
about
role
PGPR
from
collection
commercialization
low-cost
agricultural
inputs.
First,
we
introduce
concept
context
underlying
food
security
21st
century.
Next,
mechanisms
growth
promotion
by
discussed,
including
exchange
between
roots
how
relationships
modulate
responses
via
induced
systemic
resistance.
On
application
side,
discussed
rhizosphere
colonization
inoculants.
final
sections
paper
describe
applications
century
roadmap
technology.
Frontiers in Plant Science,
Journal Year:
2018,
Volume and Issue:
8
Published: Jan. 9, 2018
Root-associated
bacterial
communities
play
a
vital
role
in
maintaining
health
of
the
plant
host.
These
exist
complex
relationships,
where
composition
and
abundance
community
members
is
dependent
on
number
factors
such
as
local
soil
chemistry,
genotype
phenotype,
perturbations
surrounding
abiotic
environment.
One
common
perturbation,
drought,
has
been
shown
to
have
drastic
effects
communities,
yet
little
understood
about
underlying
causes
behind
observed
shifts
microbial
abundance.
As
drought
may
affect
root
both
directly
by
modulating
moisture
availability,
well
indirectly
altering
chemistry
phenotypes,
we
provide
synthesis
trends
recent
studies
discuss
possible
directions
for
future
research
that
hope
will
more
knowledgeable
predictions
responses
events.
Science,
Journal Year:
2022,
Volume and Issue:
375(6584)
Published: March 3, 2022
Land
degradation
reduces
soil
functioning
and,
consequently,
the
services
that
provides.
Soil
hydrological
functions
are
critical
to
combat
and
promote
restoration.
microorganisms
affect
hydrology,
but
role
of
microbiota
in
forming
sustaining
is
not
well
explored.
Case
studies
indicate
potential
as
game-changers
restoring
functions.
We
review
state
art
microorganism
use
land
restoration
technology,
groups
with
greatest
for
restoration,
knowledge
effect
on
physical
properties,
proposed
strategies
long-term
degraded
lands.
also
emphasize
need
advance
emerging
research
field
biophysical
landscape
interactions
support
soil-plant
ecosystem
practices.
Frontiers in Sustainable Food Systems,
Journal Year:
2021,
Volume and Issue:
5
Published: Feb. 15, 2021
The
rhizosphere
is
undoubtedly
the
most
complex
microhabitat,
comprised
of
an
integrated
network
plant
roots,
soil,
and
a
diverse
consortium
bacteria,
fungi,
eukaryotes,
archaea.
conditions
have
direct
impact
on
crop
growth
yield.
Nutrient-rich
environments
stimulate
yield
vice
versa.
Extensive
cultivation
exhaust
soils
which
need
to
be
nurtured
before
or
during
next
crop.
Chemical
fertilizers
are
major
source
nutrients
but
their
uncontrolled
widespread
usage
has
posed
serious
threat
sustainability
agriculture
stability
ecosystem.
These
chemicals
accumulated
in
drained
water,
emitted
air
where
they
persist
for
decades
causing
overall
Plant
growth-promoting
rhizobacteria
(PGPR)
present
convert
many
plant-unavailable
essential
e.g.,
nitrogen,
phosphorous,
zinc,
etc.
into
available
forms.
PGPR
produces
certain
hormones
(such
as
auxin,
cytokinin,
gibberellin),
cell
lytic
enzymes
(chitinase,
protease,
hydrolases,
etc.),
secondary
metabolites,
antibiotics,
stress
alleviating
compounds
(e.g.,
1-Aminocyclopropane-1-
carboxylate
deaminase),
chelating
agents
(siderophores),
some
signaling
N-Acyl
homoserine
lactones)
interact
with
beneficial
pathogenic
counterparts
rhizosphere.
multifarious
activities
improve
soil
structure,
health,
fertility,
functioning
directly
indirectly
support
under
normal
stressed
environments.
Rhizosphere
engineering
these
wide-ranging
application
not
only
fertilization
developing
eco-friendly
sustainable
agriculture.
Due
severe
climate
change
effects
plants
biology,
there
growing
interest
stress-resilient
PGPM
subsequent
induce
(drought,
salinity,
heat)
tolerance
mechanism
plants.
This
review
describes
three
components
explicit
focus
broader
perspective
that
could
facilitate
selected
hosts
serve
efficient
component
Journal of Advanced Research,
Journal Year:
2020,
Volume and Issue:
24, P. 337 - 352
Published: April 30, 2020
Plants
in
nature
are
constantly
exposed
to
a
variety
of
abiotic
and
biotic
stresses
which
limits
their
growth
production.
Enhancing
crop
yield
production
feed
exponentially
growing
global
population
sustainable
manner
by
reduced
chemical
fertilization
agrochemicals
will
be
big
challenge.
Recently,
the
targeted
application
beneficial
plant
microbiome
cocktails
counteract
stress
is
gaining
momentum
becomes
an
exciting
frontier
research.
Advances
next
generation
sequencing
(NGS)
platform,
gene
editing
technologies,
metagenomics
bioinformatics
approaches
allows
us
unravel
entangled
webs
interactions
holobionts
core
microbiomes
for
efficiently
deploying
increase
crops
nutrient
acquisition
resistance
stress.
In
this
review,
we
focused
on
shaping
rhizosphere
susceptible
host
from
resistant
comprises
specific
type
microbial
community
with
multiple
potential
benefits
CRISPR/Cas9
based
strategies
manipulation
susceptibility
genes
plants
improving
health.
This
review
significant
providing
first-hand
information
improve
fundamental
understanding
process
helps
microbiome.
Phytobiomes Journal,
Journal Year:
2017,
Volume and Issue:
1(2), P. 70 - 82
Published: Jan. 1, 2017
For
decades,
rhizobia
were
thought
to
be
the
only
nitrogen-fixing
inhabitants
of
legume
nodules,
and
biases
in
culture
techniques
prolonged
this
belief.
However,
other
bacteria,
which
are
not
typical
rhizobia,
often
detected
within
nodules
obtained
from
soil,
thus
revealing
existence
a
phytomicrobiome
where
interaction
among
individuals
is
complex,
but
also
likely
affect
behavior
fitness
host
plant.
Many
these
nonrhizobial
bacteria
nitrogen
fixers,
some
induce
on
roots.
Even
more
striking
incredibly
diverse
population
residing
that
elicit
neither
nodulation
nor
fixation.
Yet,
community
exists
nodule,
albeit
clearly
out-numbered
by
rhizobia.
Few
studies
function
nodule-associated
have
been
performed,
date,
it
known
whether
their
presence
biologically
important
or
not.
Do
they
confer
any
benefits
Rhizobium-legume
symbiosis,
parasites/saprophytes,
contaminants,
commensals?
In
review,
we
highlight
lesser-known
dwell
discuss
possible
role
enclosed
as
well
plant
rhizobial
nodule.
Although
many
nodule
capable
fixation,
potential
enhance
survival
especially
under
conditions
environmental
stress.
This
knowledge
will
useful
defining
strategies
employ
bioinoculants
themselves
combined
with
Such
an
approach
performance
persistence
decrease
usage
chemical
fertilizers
pesticides.
Frontiers in Microbiology,
Journal Year:
2016,
Volume and Issue:
7
Published: March 16, 2016
Phytoremediation
is
a
promising
technology
to
clean-up
contaminated
soils
based
on
the
synergistic
actions
of
plants
and
microorganisms.
However,
become
widely
accepted,
predictable
remediation
alternative,
deeper
understanding
plant-microbe
interactions
needed.
A
number
studies
link
success
phytoremediation
plant-associated
microbiome
functioning,
though
whether
can
exist
in
functional
states
for
soil
remediation,
incompletely
understood.
Moreover,
current
approaches
that
target
plant
host,
environment
separately
improve
phytoremediation,
potentially
overlook
microbial
functions
properties
are
part
multiscale
complexity
plant-environment
wherein
biodegradation
takes
place.
In
contrast,
situ
research
at
metaorganism
level
(host
together)
lacking.
Here,
we
discuss
competition-driven
model,
recent
evidence
from
metagenomics
level,
hypotheses
generated
by
community
ecology,
explain
establishment
catabolic
rhizosphere
soil.
There
ground
if
host
provides
right
mix
resources
(exudates)
over
which
microbes
compete,
then
competitive
plant-growth
promoting
(PGP)
be
selected
as
long
it
superiority
niche.
The
model
indicates
four
strategies
interfere
with
microbiome.
Specifically,
shifted
using
treatments
alter
resources,
environment,
take
advantage
prioritization
inoculation.
Our
suggestions,
considering
its
natural
context,
would
allow
gain
further
knowledge
plant-microbial
functions,
facilitate
translation
more
effective,
phytotechnologies.
Frontiers in Microbiology,
Journal Year:
2020,
Volume and Issue:
11
Published: Dec. 21, 2020
The
present
scenario
of
agricultural
sector
is
dependent
hugely
on
the
use
chemical-based
fertilizers
and
pesticides
that
impact
nutritional
quality,
health
status,
productivity
crops.
Moreover,
continuous
release
these
chemical
inputs
causes
toxic
compounds
such
as
metals
to
accumulate
in
soil
move
plants
with
prolonged
exposure,
which
ultimately
human
health.
Hence,
it
becomes
necessary
bring
out
alternatives
pesticides/fertilizers
for
improvement
outputs.
rhizosphere
plant
an
important
niche
abundant
microorganisms
residing
it.
They
possess
properties
growth
promotion,
disease
suppression,
removal
compounds,
assimilating
nutrients
plants.
Utilizing
beneficial
microbes
crop
presents
efficient
way
modulate
yield
by
maintaining
healthy
status
quality
through
bioformulations.
To
understand
microbial
formulation
compositions,
essential
processes
going
well
their
concrete
identification
better
utilization
diversity
growth–promoting
bacteria
arbuscular
mycorrhizal
fungi.
this
background,
review
article
highlights
microbiome
aboveground
belowground,
importance
inoculants
various
species,
subsequent
interactive
mechanisms
sustainable
agriculture.