Efficient delivery of a DNA aptamer-based biosensor into plant cells for glucose sensing through thiol-mediated uptake DOI Creative Commons
Quanbing Mou, Xueyi Xue, Yuan Ma

et al.

Science Advances, Journal Year: 2022, Volume and Issue: 8(26)

Published: June 29, 2022

DNA aptamers have been widely used as biosensors for detecting a variety of targets. Despite decades success, they not applied to monitor any targets in plants, even though plants are major platform providing oxygen, food, and sustainable products ranging from energy fuels chemicals, high-value such pharmaceuticals. A barrier progress is lack efficient methods deliver into plant cells. We herein report thiol-mediated uptake method that more efficiently delivers Arabidopsis tobacco leaf cells than another state-of-the-art method, nanostructures. Such allowed delivery glucose aptamer sensor sensing glucose. This demonstration opens new avenue apply sensors functional studies various targets, including metabolites, hormones, metal ions, proteins better understanding the biodistribution regulation these species their functions.

Language: Английский

Biosensing with DNAzymes DOI
Erin M. McConnell,

Ioana Cozma,

Quanbing Mou

et al.

Chemical Society Reviews, Journal Year: 2021, Volume and Issue: 50(16), P. 8954 - 8994

Published: Jan. 1, 2021

This article provides a comprehensive review of biosensing with DNAzymes, providing an overview different sensing applications while highlighting major progress and seminal contributions to the field portable biosensor devices point-of-care diagnostics. Specifically, functional nucleic acids is introduced, specific focus on DNAzymes. The incorporation DNAzymes into bioassays then described, followed by detailed recent advances in development vivo platforms sensors incorporating for molecular recognition. Finally, critical perspective field, summary where DNAzyme-based may make biggest impact are provided.

Language: Английский

Citations

305

Strategies to manipulate the performance of aptamers in SELEX, post-SELEX and microenvironment DOI
Shuo Qi, Nuo Duan, Imran Mahmood Khan

et al.

Biotechnology Advances, Journal Year: 2022, Volume and Issue: 55, P. 107902 - 107902

Published: Jan. 10, 2022

Language: Английский

Citations

116

Critical evaluation of aptamer binding for biosensor designs DOI
Yichen Zhao,

Kayvan Yavari,

Juewen Liu

et al.

TrAC Trends in Analytical Chemistry, Journal Year: 2021, Volume and Issue: 146, P. 116480 - 116480

Published: Nov. 13, 2021

Language: Английский

Citations

112

Biomolecular sensors for advanced physiological monitoring DOI Creative Commons
Connor D. Flynn, Dingran Chang,

Alam Mahmud

et al.

Nature Reviews Bioengineering, Journal Year: 2023, Volume and Issue: 1(8), P. 560 - 575

Published: May 11, 2023

Body-based biomolecular sensing systems, including wearable, implantable and consumable sensors allow comprehensive health-related monitoring. Glucose have long dominated wearable bioanalysis applications owing to their robust continuous detection of glucose, which has not yet been achieved for other biomarkers. However, access diverse biological fluids the development reagentless approaches may enable design body-based systems various analytes. Importantly, enhancing selectivity sensitivity is essential biomarker in complex physiological conditions. In this Review, we discuss signal amplification sensors, techniques overcome Debye mass transport limitations, improvement, such as integration artificial affinity recognition elements. We highlight that can sequential real-time measurements, example, implementation thin-film transistors devices. addition sensor construction, careful consideration physical, psychological security concerns related required ensure transition from laboratory human body seamless possible. Continuous monitoring signatures potential transform our understanding personalized preventative medicine. This Review Article discusses emerging trends pertinent considerations a new generation vivo measurement.

Language: Английский

Citations

97

Recent advances of small extracellular vesicle biomarkers in breast cancer diagnosis and prognosis DOI Creative Commons
Yujin Lee, Jie Ni, Julia Beretov

et al.

Molecular Cancer, Journal Year: 2023, Volume and Issue: 22(1)

Published: Feb. 16, 2023

Abstract Current clinical tools for breast cancer (BC) diagnosis are insufficient but liquid biopsy of different bodily fluids has recently emerged as a minimally invasive strategy that provides real-time snapshot tumour biomarkers early diagnosis, active surveillance progression, and post-treatment recurrence. Extracellular vesicles (EVs) nano-sized membranous structures 50–1000 nm in diameter released by cells into biological fluids. EVs contain proteins, nucleic acids, lipids which play pivotal roles tumourigenesis metastasis through cell-to-cell communication. Proteins miRNAs from small (sEV), range size 50–150 nm, being investigated potential source novel BC using mass spectrometry-based proteomics next-generation sequencing. This review covers recent developments sEV isolation single analysis technologies summarises the protein miRNA identified prognosis, chemoresistance. The limitations current biomarker research discussed along with future perspective applications.

Language: Английский

Citations

79

Pushing Adenosine and ATP SELEX for DNA Aptamers with Nanomolar Affinity DOI

Yuzhe Ding,

Juewen Liu

Journal of the American Chemical Society, Journal Year: 2023, Volume and Issue: 145(13), P. 7540 - 7547

Published: March 22, 2023

The classical DNA aptamer for adenosine and ATP has been the most used small molecule binding biosensing, imaging, nanotechnology. This sequence recurred multiple times in previous selections, all selections a high concentration of as target. Herein, two separate were performed using targets. By pushing target concentrations down to low micromolar range, new aptamers with Kd 230 nM obtained, showing around 30-fold higher affinity compared aptamer. still dominated library early rounds but it was suppressed later rounds. bind one instead two. Mutation studies confirmed their secondary structures specific binding. Using deep sequencing data from long-standing questions such existence one-site mutation distribution addressed. Comparisons made previously reported ATP. Finally, strand-displacement biosensor tested selectivity its nucleotides.

Language: Английский

Citations

68

A functional group–guided approach to aptamers for small molecules DOI
Kyung-Ae Yang, N. Mitchell, Saswata Banerjee

et al.

Science, Journal Year: 2023, Volume and Issue: 380(6648), P. 942 - 948

Published: June 1, 2023

Aptameric receptors are important biosensor components, yet our ability to identify them depends on the target structures. We analyzed contributions of individual functional groups small molecules binding within 27 target-aptamer pairs, identifying potential hindrances receptor isolation-for example, negative cooperativity between sterically hindered groups. To increase probability aptamer isolation for targets, such as leucine and voriconazole, which multiple previous selection attempts failed, we designed tailored strategies focused overcoming structural barriers successful selections. This approach enables us move beyond standardized protocols into group-guided searches, relying sequences common targets their analogs serve anchors in regions vast oligonucleotide spaces wherein useful reagents likely be found.

Language: Английский

Citations

67

Aptamer–Protein Interactions: From Regulation to Biomolecular Detection DOI

Cailing Ji,

Junyuan Wei,

Lei Zhang

et al.

Chemical Reviews, Journal Year: 2023, Volume and Issue: 123(22), P. 12471 - 12506

Published: Nov. 6, 2023

Serving as the basis of cell life, interactions between nucleic acids and proteins play essential roles in fundamental cellular processes. Aptamers are unique single-stranded oligonucleotides generated by vitro evolution methods, possessing ability to interact with specifically. Altering structure aptamers will largely modulate their further affect related behaviors. Recently, in-depth research aptamer–protein interactions, analytical assays based on have been widely developed become a powerful tool for biomolecular detection. There some insightful reviews applied protein detection, while few systematic discussions from perspective regulating interactions. Herein, we comprehensively introduce methods elaborate detection techniques analyzing Additionally, this review provides broad summary regulation detecting biomolecules. Finally, present our perspectives regarding opportunities challenges biological analysis, aiming provide guidance disease mechanism drug discovery.

Language: Английский

Citations

64

Recent developments and applications of surface enhanced Raman scattering spectroscopy in safety detection of fruits and vegetables DOI
Zhiming Guo,

Xinchen Wu,

Heera Jayan

et al.

Food Chemistry, Journal Year: 2023, Volume and Issue: 434, P. 137469 - 137469

Published: Sept. 14, 2023

Language: Английский

Citations

48

Development of Better Aptamers: Structured Library Approaches, Selection Methods, and Chemical Modifications DOI Creative Commons
Alex Brown,

Jake Brill,

Ryan Amini

et al.

Angewandte Chemie International Edition, Journal Year: 2024, Volume and Issue: 63(16)

Published: Jan. 23, 2024

Abstract Systematic evolution of ligands by exponential enrichment (SELEX) has been used to discover thousands aptamers since its development in 1990. Aptamers are short single‐stranded oligonucleotides capable binding targets with high specificity and selectivity through structural recognition. While offer advantages over other molecular recognition elements such as their ease production, smaller size, extended shelf‐life, lower immunogenicity, they have yet show significant success real‐world applications. By analyzing the importance structured library designs, reviewing different SELEX methodologies, effects chemical modifications, we provide a comprehensive overview on production for applications drug delivery systems, therapeutics, diagnostics, imaging.

Language: Английский

Citations

48