Innovative computational tools provide new insights into the polyploid wheat genome DOI Creative Commons
Yongming Chen, Wenxi Wang, Zhengzhao Yang

et al.

aBIOTECH, Journal Year: 2024, Volume and Issue: 5(1), P. 52 - 70

Published: Feb. 7, 2024

Abstract Bread wheat ( Triticum aestivum ) is an important crop and serves as a significant source of protein calories for humans, worldwide. Nevertheless, its large allopolyploid genome poses constraints on genetic improvement. The complex reticulate evolutionary history the intricacy genomic resources make deciphering functional considerably more challenging. Recently, we have developed comprehensive list versatile computational tools with integration statistical models dissecting polyploid genome. Here, summarize methodological innovations applications these databases. A series step-by-step examples illustrates how can be utilized germplasm unveiling genes associated agronomic traits. Furthermore, outline future perspectives new advanced databases, taking into consideration unique features bread wheat, to accelerate genomic-assisted breeding.

Language: Английский

A comprehensive overview of cotton genomics, biotechnology and molecular biological studies DOI

Xingpeng Wen,

Zhiwen Chen, Zuoren Yang

et al.

Science China Life Sciences, Journal Year: 2023, Volume and Issue: 66(10), P. 2214 - 2256

Published: March 6, 2023

Language: Английский

Citations

83

Molecular Markers and Their Applications in Marker-Assisted Selection (MAS) in Bread Wheat (Triticum aestivum L.) DOI Creative Commons
Liqiang Song, Ruihui Wang, Xueju Yang

et al.

Agriculture, Journal Year: 2023, Volume and Issue: 13(3), P. 642 - 642

Published: March 8, 2023

As one of the essential cereal crops, wheat provides 20% calories and proteins consumed by humans. Due to population expansion, dietary shift climate change, it is challenging for breeders develop new varieties meeting production requirements. Marker-assisted selection (MAS) has distinct advantages over conventional in plant breeding, such as being time-saving, cost-effective goal-oriented. This review makes attempts give a description different molecular markers: sequence tagged site (STS), simple repeat (SSR), genotyping sequencing (GBS), single nucleotide polymorphism (SNP) arrays, exome capture, Kompetitive Allele Specific PCR (KASP), cleaved amplified polymorphic (CAPS), semi-thermal asymmetric reverse (STARP) target (GBTS). We also summarize some quantitative trait loci (QTL)/genes well their linked markers, which are potentially useful MAS. paper updated information on markers critical traits potential applications breeding programs.

Language: Английский

Citations

54

Efficient and versatile multiplex prime editing in hexaploid wheat DOI Creative Commons

Pei Ni,

Yidi Zhao,

Ximeng Zhou

et al.

Genome biology, Journal Year: 2023, Volume and Issue: 24(1)

Published: June 29, 2023

Prime editing is limited by low efficiency in plants. Here, we develop an upgraded engineered plant prime editor hexaploid wheat, ePPEplus, introducing a V223A substitution into reverse transcriptase the ePPEmax* architecture. ePPEplus enhances average 33.0-fold and 6.4-fold compared to original PPE ePPE, respectively. Importantly, robust multiplex platform established for simultaneous of four ten genes protoplasts up eight regenerated wheat plants at frequencies 74.5%, thus expanding applicability editors stacking multiple agronomic traits.

Language: Английский

Citations

51

Systematic identification of wheat spike developmental regulators by integrated multi-omics, transcriptional network, GWAS, and genetic analyses DOI Creative Commons
Xuelei Lin, Yongxin Xu, Dongzhi Wang

et al.

Molecular Plant, Journal Year: 2024, Volume and Issue: 17(3), P. 438 - 459

Published: Feb. 2, 2024

Language: Английский

Citations

18

Variation in TaSPL6-D confers salinity tolerance in bread wheat by activating TaHKT1;5-D while preserving yield-related traits DOI
Meng Wang, Jie Cheng, Jianhui Wu

et al.

Nature Genetics, Journal Year: 2024, Volume and Issue: 56(6), P. 1257 - 1269

Published: May 27, 2024

Language: Английский

Citations

18

Wheat Pm55 alleles exhibit distinct interactions with an inhibitor to cause different powdery mildew resistance DOI Creative Commons

Chuntian Lu,

Jie Du,

Heyu Chen

et al.

Nature Communications, Journal Year: 2024, Volume and Issue: 15(1)

Published: Jan. 13, 2024

Abstract Powdery mildew poses a significant threat to wheat crops worldwide, emphasizing the need for durable disease control strategies. The wheat- Dasypyrum villosum T5AL·5 V#4 S and T5DL·5 translocation lines carrying powdery resistant gene Pm55 shows developmental-stage tissue-specific resistance, whereas V#5 line Pm5V confers resistance at all stages. Here, we clone , reveal that they are allelic renamed as Pm55a Pm55b respectively. two alleles encode coiled-coil, nucleotide-binding site-leucine-rich repeat (CNL) proteins, conferring broad-spectrum mildew. However, interact differently with linked inhibitor gene, SuPm55 cause different Notably, unrelated CNL inactivation of significantly reduces plant fitness. Combining / in does not result allele suppression or yield penalty. Our results provide only insights into wheat, but also strategy breeding resistance.

Language: Английский

Citations

16

Fine mapping of Pm71, a novel powdery mildew resistance gene from emmer wheat DOI Creative Commons
Jiadong Zhang, Hong Yang, Guohao Han

et al.

The Crop Journal, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

Language: Английский

Citations

2

Wheat adaptation to environmental stresses under climate change: Molecular basis and genetic improvement DOI Creative Commons
Hude Mao, Cong Jiang, Chunlei Tang

et al.

Molecular Plant, Journal Year: 2023, Volume and Issue: 16(10), P. 1564 - 1589

Published: Sept. 9, 2023

Language: Английский

Citations

42

Fighting wheat powdery mildew: from genes to fields DOI
Bo Wang, Ting Meng,

Bei Xiao

et al.

Theoretical and Applied Genetics, Journal Year: 2023, Volume and Issue: 136(9)

Published: Aug. 22, 2023

Language: Английский

Citations

33

Genome resources for the elite bread wheat cultivar Aikang 58 and mining of elite homeologous haplotypes for accelerating wheat improvement DOI Creative Commons
Jizeng Jia,

Guangyao Zhao,

Danping Li

et al.

Molecular Plant, Journal Year: 2023, Volume and Issue: 16(12), P. 1893 - 1910

Published: Oct. 28, 2023

Language: Английский

Citations

29