Frontiers in Plant Science,
Journal Year:
2023,
Volume and Issue:
14
Published: Oct. 11, 2023
Omics
techniques,
including
genomics,
transcriptomics,
proteomics,
and
metabolomics
have
smoothed
the
researcher’s
ability
to
generate
hypotheses
discover
various
agronomically
relevant
functions
mechanisms,
as
well
their
implications
associations.
With
a
significant
increase
in
number
of
cases
with
resistance
multiple
herbicide
modes
action,
studies
on
are
currently
one
predominant
areas
research
within
field
weed
science.
High-throughput
technologies
already
started
revolutionizing
current
molecular
biology
studies.
The
evolution
weeds
(particularly
via
non-target
site
mechanism)
is
perfect
example
complex,
multi-pathway
integration-induced
response.
To
date,
functional
transcriptomic
metabolomic
been
used
separately
research,
however
there
substantial
lack
integrated
approach.
Hence,
despite
omics
provide
insights
into
functioning
weeds,
using
single
can
sometimes
be
misleading.
This
mini-review
will
aim
discuss
progress
transcriptome-based
metabolome-based
approaches
along
systematic
integration.
International Journal of Molecular Sciences,
Journal Year:
2023,
Volume and Issue:
24(7), P. 6603 - 6603
Published: April 1, 2023
The
vast
majority
of
agricultural
land
undergoes
abiotic
stress
that
can
significantly
reduce
yields.
Understanding
the
mechanisms
plant
defenses
against
stresses
and
putting
this
knowledge
into
practice
is,
therefore,
an
integral
part
sustainable
agriculture.
In
review,
we
focus
on
current
findings
in
resistance
to
four
cardinal
stressors-drought,
heat,
salinity,
low
temperatures.
Apart
from
description
newly
discovered
signaling
stress,
review
also
focuses
importance
primary
secondary
metabolites,
including
carbohydrates,
amino
acids,
phenolics,
phytohormones.
A
meta-analysis
transcriptomic
studies
concerning
model
Arabidopsis
demonstrates
long-observed
phenomenon
stressors
induce
different
signals
effects
at
level
gene
expression,
but
genes
whose
regulation
is
similar
under
most
still
be
traced.
analysis
further
reveals
transcriptional
modulation
Golgi-targeted
proteins
response
heat
stress.
Our
highlights
several
are
similarly
regulated
all
conditions.
These
support
central
role
phytohormones
response,
some
these
has
not
yet
been
studied.
Finally,
provides
information
about
major
European
crop
plants-wheat,
sugar
beet,
maize,
potatoes,
barley,
sunflowers,
grapes,
rapeseed,
tomatoes,
apples.
Plant Biotechnology Journal,
Journal Year:
2023,
Volume and Issue:
21(10), P. 2057 - 2073
Published: June 30, 2023
Low
temperature
is
the
main
environmental
factor
affecting
yield,
quality
and
geographical
distribution
of
crops,
which
significantly
restricts
development
fruit
industry.
The
NAC
(NAM,
ATAF1/2
CUC2)
transcription
(TF)
family
involved
in
regulating
plant
cold
tolerance,
but
mechanisms
underlying
these
regulatory
processes
remain
unclear.
Here,
TF
MdNAC104
played
a
positive
role
modulating
apple
tolerance.
Under
stress,
MdNAC104-overexpressing
transgenic
plants
exhibited
less
ion
leakage
lower
ROS
(reactive
oxygen
species)
accumulation,
higher
contents
osmoregulatory
substances
activities
antioxidant
enzymes.
Transcriptional
regulation
analysis
showed
that
directly
bound
to
MdCBF1
MdCBF3
promoters
promote
expression.
In
addition,
based
on
combined
transcriptomic
metabolomic
analyses,
as
well
promoter
binding
transcriptional
we
found
stimulated
accumulation
anthocyanin
under
conditions
by
upregulating
expression
synthesis-related
genes,
including
MdCHS-b,
MdCHI-a,
MdF3H-a
MdANS-b,
increased
enzymes
promoting
enzyme-encoding
genes
MdFSD2
MdPRXR1.1.
conclusion,
this
study
revealed
mechanism
tolerance
via
CBF-dependent
CBF-independent
pathways.
Horticultural Plant Journal,
Journal Year:
2023,
Volume and Issue:
10(3), P. 931 - 946
Published: Aug. 28, 2023
Osmotic
stress
caused
by
low-temperature,
drought
and
salinity
was
a
prevalent
abiotic
in
plant
that
severely
inhibited
development
agricultural
yield,
particularly
tea
plant.
Jasmonic
acid
(JA)
is
an
important
phytohormone
involving
stress.
However,
underlying
molecular
mechanisms
of
JA
modulated
osmotic
response
remains
unclear.
In
this
study,
high
concentration
mannitol
induced
accumulation
increase
peroxidase
activity
Integrated
transcriptome
mined
signaling
master,
MYC2
transcription
factor
shown
as
hub
regulator
mannitol,
expression
which
positively
correlated
with
biosynthetic
genes
(LOX
AOS)
(PER).
CsMYC2
determined
nuclei-localized
activator,
furthermore,
Protein-DNA
interaction
analysis
indicated
positive
activated
the
CsLOX7,
CsAOS2,
CsPER1
CsPER3
via
bound
their
promoters,
respectively.
Suppression
resulted
reduced
content
tolerance
Overexpression
Arabidopsis
improved
content,
plants
against
Together,
we
proposed
feedback
loop
mediated
CsMYC2,
CsLOX7
CsAOS2
constituted
to
through
fine-tuning
levels
POD
BMC Plant Biology,
Journal Year:
2024,
Volume and Issue:
24(1)
Published: Jan. 8, 2024
Abstract
Background
Drought
stress
can
substantially
restrict
maize
growth
and
productivity,
global
warming
an
increasing
frequency
of
extreme
weather
events
are
likely
to
result
in
more
yield
losses
the
future.
Therefore,
unraveling
molecular
mechanism
underlying
response
drought
is
essential
for
breeding
drought-resilient
crops.
Results
In
this
study,
we
subjected
3-leaf-period
plants
two
inbred
lines,
a
drought-tolerant
line
(si287)
drought-sensitive
(X178),
seven
days
while
growing
chamber.
Subsequently,
measured
physiological
traits
analyzed
transcriptomic
metabolic
profiles
lines.
Our
KEGG
analysis
genes
metabolites
revealed
significant
differences
pathways
related
glycolysis/gluconeogenesis,
flavonoid
biosynthesis,
starch
sucrose
metabolism,
biosynthesis
amino
acids.
Additionally,
our
joint
identified
proline,
tryptophan
phenylalanine
crucial
acids
stress.
Furthermore,
concentrated
on
(Trp),
which
was
found
enhance
tolerance
via
IAA-ABA
signaling,
as
well
SA
nicotinamide
adenine
dinucleotide
(NAD)
consequent
reactive
oxygen
species
(ROS)
scavenging.
We
three
hub
indole-3-acetaldehyde
oxidase
(
ZmAO1
,
542,228),
catalase
1
ZmCAT1
542,369),
flavin-containing
monooxygenase
6
ZmYUC6
103,629,142),
High
expression
these
plays
role
regulating
tolerance.
Two
quinolinic
acid,
kynurenine
improved
by
scavenging
species.
Conclusions
This
study
illuminates
mechanisms
seedlings
Especially,
it
identifies
novel
candidate
metabolites,
enriching
understanding
The
identification
distinct
resistance
lines
will
facilitate
exploration
germplasm
hybrids.
International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(13), P. 6845 - 6845
Published: June 21, 2024
Plants
are
subjected
to
abiotic
stresses
throughout
their
developmental
period.
Abiotic
include
drought,
salt,
heat,
cold,
heavy
metals,
nutritional
elements,
and
oxidative
stresses.
Improving
plant
responses
various
environmental
is
critical
for
survival
perpetuation.
WRKY
transcription
factors
have
special
structures
(WRKY
structural
domains),
which
enable
the
different
transcriptional
regulatory
functions.
can
not
only
regulate
stress
growth
development
by
regulating
phytohormone
signalling
pathways
but
also
promote
or
suppress
expression
of
downstream
genes
binding
W-box
[TGACCA/TGACCT]
in
promoters
target
genes.
In
addition,
interact
with
other
families
defence
self-regulate
recognising
W-boxes
own
However,
recent
years,
research
reviews
on
roles
higher
plants
been
scarce
shallow.
this
review,
we
focus
structure
classification
factors,
as
well
identification
molecular
mechanisms
involved
response
stresses,
improve
tolerance
ability
under
stress,
look
forward
future
directions,
a
view
providing
theoretical
support
genetic
improvement
crop
tolerance.
Plants
are
subjected
to
abiotic
stresses
throughout
their
developmental
period.
Abiotic
include
drought,
salt,
heat,
cold,
heavy
metals,
nutritional
element
and
oxidative
stresses.
Improving
plant
response
various
environmental
is
critical
for
survival
perpetuation.
The
WRKY
transcription
factors
have
special
structure
(WRKY
structural
domains),
which
enable
different
transcriptional
regulatory
functions.
can
not
only
regulate
growth
development
by
regulating
phytohormone
signalling
pathways,
but
also
promote
or
suppress
the
expression
of
downstream
genes
binding
W-box
[TGACCA/TGACCT]
in
promoters
target
genes.
In
addition,
interact
with
other
families
defence
responses
stresses,
self-regulate
recognizing
W-boxes
own
However,
recent
years,
research
reviews
on
roles
higher
plants
scarce
shallow.
this
review,
we
focus
classification
factors,
as
well
identification
molecular
mechanisms
involved
improve
tolerance
ability
stress
look
forward
future
directions,
a
view
providing
theoretical
support
genetic
improvement
crop
tolerance.
Horticultural Plant Journal,
Journal Year:
2023,
Volume and Issue:
10(2), P. 532 - 544
Published: Feb. 18, 2023
In
this
study,
we
assessed
the
influence
of
exogenous
ME
in
mitigation
cold
damage
pepper
seedlings.
Melatonin
(ME)
is
a
dynamic
molecule
that
helps
plants
cope
with
stress
several
ways.
Cold
(CS)
one
most
important
environmental
factors
restrict
plant
growth
and
yield.
Pepper
(Capsicum
annuum
L.)
valuable
commercial
crop,
highly
sensitive
to
CS.
Thus,
identifying
an
efficient
strategy
mitigate
critical
for
long-term
production.
For
purpose,
roots
seedlings
were
pretreated
(5
μmol
L−1)
exposed
CS
7
d.
The
present
results
indicated
suppressed
growth,
hampered
photosynthetic
capacity,
damaged
root
architecture
plants.
contrast,
production
reactive
oxygen
species
(ROS),
malondialdehyde
(MDA),
electrolyte
leakage
(EL),
proline,
soluble
sugars
enhanced
under
pretreatment
reduced
negative
effects
by
recovering
traits,
gas
exchange
elements,
pigment
molecules
compared
control
treatment.
Furthermore,
application
efficiently
oxidative
markers
[hydrogen
peroxide
(H2O2),
superoxide
ion
(O2•–),
EL,
MDA]
while
increasing
proline
sugar
content
leaves.
addition,
combined
further
increased
antioxidant
enzymes
related
gene
expression.
Collectively,
our
confirmed
mitigating
potential
supplementation
maintaining
seedling
improving
photosynthesis
apparatus,
regulating
pigments,
osmolyte
content.
Frontiers in Plant Science,
Journal Year:
2024,
Volume and Issue:
14
Published: Jan. 3, 2024
Lowering
the
storage
temperature
is
an
effective
method
to
extend
postharvest
and
shelf
life
of
fruits.
Nevertheless,
this
technique
often
leads
physiological
disorders,
commonly
known
as
chilling
injuries.
Apples
pears
are
susceptible
injuries,
among
which
superficial
scald
most
economically
relevant.
Superficial
due
necrotic
lesions
first
layers
hypodermis
manifested
through
skin
browning.
In
peaches
nectarines,
injuries
characterized
by
internal
symptoms,
such
mealiness.
Fruits
with
these
aesthetic
or
compositional/structural
defects
not
suitable
for
fresh
consumption.
Genetic
variation
a
key
factor
in
determining
fruit
susceptibility
injuries;
however,
physiological,
technical
aspects
harvest
maturity
conditions
also
play
role.
Multi-omics
approaches
have
been
used
provide
integrated
explanation
injury
development.
Metabolomics
pome
fruits
specifically
targets
identification
ethylene,
phenols,
lipids,
oxidation
products.
Genomics
transcriptomics
revealed
interesting
connections
metabolomic
datasets,
pinpointing
specific
genes
linked
cold
stress,
wax
synthesis,
farnesene
metabolism,
metabolic
pathways
ascorbate
glutathione.
When
applied
Prunus
species,
cutting-edge
uncovered
that
development
mealiness
symptoms
ethylene
signaling,
cell
wall
lipid
stress
genes,
increased
DNA
methylation
levels.
Emphasizing
findings
from
multi-omics
studies,
review
reports
how
integration
omics
datasets
can
new
insights
into
understanding
This
information
essential
successfully
creating
more
resilient
varieties
developing
novel
strategies.