The dynamic relationship between COVID-19 cases and SARS-CoV-2 wastewater concentrations across time and space: considerations for model training data sets DOI Creative Commons

Rebecca Schill,

Kara L. Nelson, Sasha Harris-Lovett

et al.

medRxiv (Cold Spring Harbor Laboratory), Journal Year: 2022, Volume and Issue: unknown

Published: Nov. 24, 2022

Abstract During the COVID-19 pandemic, wastewater-based surveillance has been used alongside diagnostic testing to monitor infection rates. With decline in cases reported public health departments due at-home testing, wastewater data may serve as primary input for epidemiological models, but training these models is not straightforward. We explored factors affecting noise and bias ratio between case collected 26 sewersheds California from October 2020 March 2022. The strength of relationship appeared dependent on sampling frequency population size, was increased by normalization flow rate or count Additionally, lead lag times varied over time space, log-transformed individual concentrations changed time. This sequentially Epsilon/Alpha, Delta, Omicron BA.1 variant surges also related rate. Based this analysis, we present a framework scenarios describing dynamics aid handling decisions ongoing modeling efforts.

Language: Английский

Recent progress on wastewater-based epidemiology for COVID-19 surveillance: A systematic review of analytical procedures and epidemiological modeling DOI Open Access
Stéfano Ciannella, Cristina González-Fernández, Jenifer Gómez‐Pastora

et al.

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 878, P. 162953 - 162953

Published: March 21, 2023

Language: Английский

Citations

60

Normalisation of SARS-CoV-2 concentrations in wastewater: The use of flow, electrical conductivity and crAssphage DOI Creative Commons
Jeroen Langeveld, Rémy Schilperoort, Leo Heijnen

et al.

The Science of The Total Environment, Journal Year: 2022, Volume and Issue: 865, P. 161196 - 161196

Published: Dec. 26, 2022

Over the course of Corona Virus Disease-19 (COVID-19) pandemic in 2020–2022, monitoring severe acute respiratory syndrome coronavirus 2 ribonucleic acid (SARS-CoV-2 RNA) wastewater has rapidly evolved into a supplementary surveillance instrument for public health. Short term trends (2 weeks) are used as basis policy and decision making on measures dealing with pandemic. Normalisation is required to account dilution rate domestic that can strongly vary due time- location-dependent sewer inflow runoff, industrial discharges extraneous waters. The standard approach sewage normalisation using flow measurements, although based not effective case volume sampled does match produced. In this paper, two alternative methods, electrical conductivity crAssphage have been studied compared measurements. For this, total 1116 24-h flow-proportional samples collected between September 2020 August 2021 at nine locations. addition, 221 stool analysed determine daily load per person. Results show that, shedding rates person greatly, population-level loads day were constant over time similar all catchments. Consequently, be quantitative biomarker populations above 5595 persons. Electrical particularly suitable relative dry weather concentrations. overall conclusion necessary reliably short-term virus circulation, enhanced and/or measurement quality check.

Language: Английский

Citations

48

The dynamic relationship between COVID-19 cases and SARS-CoV-2 wastewater concentrations across time and space: Considerations for model training data sets DOI Creative Commons

Rebecca Schill,

Kara L. Nelson, Sasha Harris-Lovett

et al.

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 871, P. 162069 - 162069

Published: Feb. 7, 2023

During the COVID-19 pandemic, wastewater-based surveillance has been used alongside diagnostic testing to monitor infection rates. With decline in cases reported public health departments due at-home testing, wastewater data may serve as primary input for epidemiological models, but training these models is not straightforward. We explored factors affecting noise and bias ratio between case collected 26 sewersheds California from October 2020 March 2022. The strength of relationship appeared dependent on sampling frequency population size, was increased by normalization flow rate or count Additionally, lead lag times varied over time space, log-transformed individual concentrations changed time. This decreased Epsilon/Alpha Delta variant surges during Omicron BA.1 surge, also related rate. Based this analysis, we present a framework scenarios describing dynamics aid handling decisions ongoing modeling efforts.

Language: Английский

Citations

32

COVID-19 monitoring with sparse sampling of sewered and non-sewered wastewater in urban and rural communities DOI Creative Commons
Dhammika Leshan Wannigama, Mohan Amarasiri, Parichart Hongsing

et al.

iScience, Journal Year: 2023, Volume and Issue: 26(7), P. 107019 - 107019

Published: June 9, 2023

Language: Английский

Citations

25

Structured Ethical Review for Wastewater-Based Testing in Support of Public Health DOI Creative Commons
Devin A. Bowes, Amanda Darling, Erin M. Driver

et al.

Environmental Science & Technology, Journal Year: 2023, Volume and Issue: 57(35), P. 12969 - 12980

Published: Aug. 23, 2023

Wastewater-based testing (WBT) for SARS-CoV-2 has rapidly expanded over the past three years due to its ability provide a comprehensive measurement of disease prevalence independent clinical testing. The development and simultaneous application WBT measured biomarkers research activities pursuit public health goals, both areas with well-established ethical frameworks. Currently, practitioners do not employ standardized review process, introducing potential adverse outcomes professionals community members. To address this deficiency, an interdisciplinary workshop developed framework structured WBT. employed consensus approach create as set 11 questions derived from primarily guidance. This study retrospectively applied these monitoring programs covering emergent phase pandemic (3/2020-2/2022 (

Language: Английский

Citations

23

COVID-19 hospitalizations and deaths predicted by SARS-CoV-2 levels in Boise, Idaho wastewater DOI
Swarna Kanchan,

Ernie Ogden,

Minu Kesheri

et al.

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 907, P. 167742 - 167742

Published: Oct. 17, 2023

Language: Английский

Citations

19

Wastewater-based epidemiology for COVID-19 surveillance and beyond: A survey DOI Creative Commons
Chen Chen,

Yunfan Wang,

Gursharn Kaur

et al.

Epidemics, Journal Year: 2024, Volume and Issue: 49, P. 100793 - 100793

Published: Sept. 26, 2024

Language: Английский

Citations

5

Photoinactivation of Phage Phi6 as a SARS-CoV-2 Model in Wastewater: Evidence of Efficacy and Safety DOI Creative Commons

Marta Gomes,

Maria Bartolomeu, Cátia Vieira

et al.

Microorganisms, Journal Year: 2022, Volume and Issue: 10(3), P. 659 - 659

Published: March 19, 2022

The last two years have been marked by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic. This virus is found in intestinal tract; it reaches wastewater systems and, consequently, natural receiving water bodies. As such, inefficiently treated (WW) can be a means of contamination. currently used methods for disinfection WW lead to formation toxic compounds and expensive or inefficient. new alternative approaches must considered, namely, photodynamic inactivation (PDI). In this work, bacteriophage φ6 (or, simply, phage φ6), which has as suitable model enveloped RNA viruses, such coronaviruses (CoVs), was SARS-CoV-2. Firstly, understand virus's survival environment, subjected different laboratory-controlled environmental conditions (temperature, pH, salinity, solar UV-B irradiation), its persistence over time assessed. Second, assess efficiency PDI towards virus, assays were performed both phosphate-buffered saline (PBS), commonly aqueous matrix, secondarily (a real matrix). Third, generally discharged into marine environment after treatment, safety PDI-treated assessed through determination viability native microorganisms their contact with effluent. Overall, results showed that, when surrogate SARS-CoV-2, remains viable considerable period. Moreover, proved an efficient approach effluent no toxicity aquatic under realistic dilution conditions, thus endorsing safe tertiary method. Although all studies φ6, considered further using SARS-CoV-2 are necessary; nevertheless, findings show potential controlling WW.

Language: Английский

Citations

20

Understanding the efficacy of wastewater surveillance for SARS-CoV-2 in two diverse communities DOI Creative Commons
Matthew Flood, Josh S. Sharp,

Jennifer Bruggink

et al.

PLoS ONE, Journal Year: 2023, Volume and Issue: 18(8), P. e0289343 - e0289343

Published: Aug. 3, 2023

During the COVID-19 pandemic, wastewater-based surveillance has been shown to be a useful tool for monitoring spread of disease in communities and emergence new viral variants concern. As pandemic enters its fourth year clinical testing declined, wastewater offers consistent non-intrusive way monitor community health long term. This study sought understand how accurately represented actual burden between communities. Two varying size demographics Michigan were monitored SARS-CoV-2 March 2020 February 2022. Additionally, each was concern from December Wastewater results compared with zipcode county level case data determine which scope most correlated loading. Pearson r correlations highest smaller two (population 25,000) N1 GC/person/day data, date onset symptoms ( = 0.81). A clear difference seen more cases virus signals larger 110,000) when examined based on vaccine status, reached only 50%. While levels had lower correlation community, information still as valuable supporting public actions further including vaccination status should future.

Language: Английский

Citations

11

Comparative assessment of sewer sampling methods for infectious disease surveillance: Insights from transport modeling and simulations of SARS-CoV-2 emissions DOI

Min Jeong Ban,

Keugtae Kim, Sungpyo Kim

et al.

Water Research, Journal Year: 2025, Volume and Issue: 278, P. 123373 - 123373

Published: Feb. 23, 2025

Language: Английский

Citations

0