PLoS ONE,
Journal Year:
2019,
Volume and Issue:
14(7), P. e0219207 - e0219207
Published: July 24, 2019
The
distribution
and
diversity
of
RNA
viruses
in
fungi
is
incompletely
understood
due
to
the
often
cryptic
nature
mycoviral
infections
focused
study
primarily
pathogenic
and/or
economically
important
fungi.
As
most
that
are
known
infect
possess
either
single-stranded
or
double-stranded
genomes,
transcriptomic
data
provides
opportunity
query
for
diverse
fungal
samples
without
any
a
priori
knowledge
virus
infection.
Here
we
describe
systematic
survey
all
datasets
from
belonging
subphylum
Pezizomycotina.
Using
simple
but
effective
computational
pipeline
uses
reads
discarded
during
normal
RNA-seq
analyses,
followed
by
identification
viral
RNA-dependent
polymerase
(RdRP)
motif
de
novo
assembled
contigs,
59
44
different
were
identified.
Among
identified,
88%
determined
be
new
species
68%
are,
our
knowledge,
first
described
species.
Comprehensive
analyses
both
nucleotide
inferred
protein
sequences
characterize
phylogenetic
relationships
between
these
set
support
classification
up
four
families
two
genera.
Thus
results
provide
deeper
understanding
scope
while
also
increasing
hosts.
Further,
this
demonstrates
suitability
analyzing
facilitate
rapid
discovery
viruses.
Cell Host & Microbe,
Journal Year:
2019,
Volume and Issue:
26(2), P. 183 - 192
Published: Aug. 1, 2019
In
the
past
four
decades,
tremendous
progress
has
been
made
in
understanding
how
plants
respond
to
microbial
colonization
and
pathogens
symbionts
reprogram
plant
cellular
processes.
contrast,
our
knowledge
of
environmental
conditions
impact
plant-microbe
interactions
is
less
understood
at
mechanistic
level,
as
most
molecular
studies
are
performed
under
simple
static
laboratory
conditions.
this
review,
we
highlight
research
that
begins
shed
light
on
mechanisms
by
which
influence
diverse
plant-pathogen,
plant-symbiont,
plant-microbiota
interactions.
There
a
great
need
increase
efforts
important
area
order
reach
systems-level
more
reflective
what
occurs
nature.
Plant Ecology & Diversity,
Journal Year:
2018,
Volume and Issue:
11(5-6), P. 555 - 567
Published: Nov. 2, 2018
ABSTRACT
Background
Fungal
endophytes
occur
ubiquitously
in
plants
and
are
being
increasingly
studied
for
their
ability
to
support
plant
health
protect
the
host
from
diseases.
Using
disease
control
provides
potential
advantages
compared
other
biocontrol
agents
since
they
colonise
internally
thereby
stay
protected
environmental
stresses
fluctuations.
A
thorough
understanding
of
mechanisms
is
required
mutualistic
association
with
plants;
both
optimise
efficacy
registration
as
protection
products.
Aims
To
provide
a
critical
review
on
employed
by
endophytic
fungi
biological
control.
Furthermore,
we
draw
attention
gaps
our
knowledge
complex
interactions
between
plant,
pathogen
endophyte
discuss
implications
future
research.
Methods
Review
literature
where
colonisation
during
specific
interaction
has
been
confirmed.
Results
Known
disease-reducing
include
direct
inhibition
activity
competition,
antibiosis
mycoparasitism
indirect
induced
resistance,
plant's
own
defence
system
activated
combat
Relying
vitro
studies
alone
can
result
misleading
conclusions.
Conclusions
We
need
investigate
nature
requirements
establishment
successful
plant-endophyte
interactions,
development
efficient
agents.
Proceedings of the National Academy of Sciences,
Journal Year:
2017,
Volume and Issue:
114(44)
Published: Oct. 2, 2017
Most
land
plants
live
in
association
with
arbuscular
mycorrhizal
(AM)
fungi
and
rely
on
this
symbiosis
to
scavenge
phosphorus
(P)
from
soil.
The
ability
establish
partnership
has
been
lost
some
plant
lineages
like
the
Brassicaceae,
which
raises
question
of
what
alternative
nutrition
strategies
such
have
grow
P-impoverished
soils.
To
understand
contribution
plant-microbiota
interactions,
we
studied
root-associated
fungal
microbiome
New Phytologist,
Journal Year:
2018,
Volume and Issue:
220(4), P. 1031 - 1046
Published: May 28, 2018
Contents
Summary
1031
I.
Introduction
II.
Interkingdom
communication
enabling
symbiosis
1032
III.
Nutritional
and
regulatory
roles
for
key
metabolites
in
the
AM
1035
IV.
The
plant–fungus
genotype
combination
determines
outcome
of
1039
V.
Perspectives
Acknowledgements
1041
References
evolutionary
ecological
success
arbuscular
mycorrhizal
(AM)
relies
on
an
efficient
multifactorial
system
partner
recognition,
a
fine‐tuned
reciprocal
metabolic
regulation
each
symbiont
to
reach
optimal
functional
integration.
Besides
strigolactones,
N
‐acetylglucosamine‐derivatives
released
by
plant
were
recently
suggested
trigger
fungal
reprogramming
at
pre‐contact
stage.
Remarkably,
‐acetylglucosamine‐based
diffusible
molecules
also
are
symbiotic
signals
produced
fungi
(AMF)
clues
mechanisms
their
perception
emerging.
AMF
genomes
transcriptomes
contain
battery
putative
effector
genes
that
may
have
conserved
AMF‐
or
host
plant‐specific
functions.
Nutrient
exchange
is
feature
symbiosis.
A
mechanism
phosphate
transport
inside
hyphae
has
been
suggested,
first
insights
into
root
colonization
accordance
with
nutrient
transfer
status
obtained.
recent
discovery
dependency
fatty
acid
from
offered
convincing
explanation
obligate
biotrophism.
Novel
studies
highlighted
importance
genotypes
These
findings
open
new
perspectives
fundamental
research
application
agriculture.
PLoS Biology,
Journal Year:
2017,
Volume and Issue:
15(11), P. e2003583 - e2003583
Published: Nov. 17, 2017
Filamentous
fungi
produce
a
diverse
array
of
secondary
metabolites
(SMs)
critical
for
defense,
virulence,
and
communication.
The
metabolic
pathways
that
SMs
are
found
in
contiguous
gene
clusters
fungal
genomes,
an
atypical
arrangement
other
eukaryotes.
Comparative
studies
filamentous
species
have
shown
SM
often
either
highly
divergent
or
uniquely
present
one
handful
species,
hampering
efforts
to
determine
the
genetic
basis
evolutionary
drivers
cluster
divergence.
Here,
we
examined
variation
66
cosmopolitan
strains
single
opportunistic
human
pathogen
Aspergillus
fumigatus.
Investigation
genome-wide
within-species
revealed
5
general
types
clusters:
nonfunctional
polymorphisms;
gain
loss
whole
allelic
polymorphisms,
which
different
alleles
corresponded
distinct,
nonhomologous
clusters;
location
was
differ
its
genomic
across
strains.
These
polymorphisms
affect
function
representative
A.
fumigatus
clusters,
such
as
those
involved
production
gliotoxin,
fumigaclavine,
helvolic
acid
well
with
undefined
products.
In
addition
enabling
identification
detection
requires
extensive
synteny
conservation
(e.g.,
mobile
alleles),
our
approach
also
implicated
multiple
underlying
drivers,
including
point
mutations,
recombination,
deletion
insertion
events
horizontal
transfer
from
distant
fungi.
Finally,
most
variants
uncover
within
been
previously
hypothesized
contribute
diversity
entire
classes
phyla.
We
suggest
operating
here
sufficient
explain
macroevolutionary
patterns.
New Phytologist,
Journal Year:
2018,
Volume and Issue:
217(3), P. 1213 - 1229
Published: Jan. 7, 2018
Summary
Some
soil
fungi
in
the
Leotiomycetes
form
ericoid
mycorrhizal
(
ERM
)
symbioses
with
Ericaceae.
In
harsh
habitats
which
they
occur,
plant
survival
relies
on
nutrient
mobilization
from
organic
matter
SOM
by
their
fungal
partners.
The
characterization
of
genetic
machinery
underpinning
both
symbiotic
lifestyle
and
degradation
is
needed
to
understand
symbiosis
functioning
evolution,
its
impact
carbon
(C)
turnover.
We
sequenced
genomes
Meliniomyces
bicolor
,
M.
variabilis
Oidiodendron
maius
Rhizoscyphus
ericae
compared
gene
repertoires
those
different
lifestyles
(ecto‐
orchid
mycorrhiza,
endophytes,
saprotrophs,
pathogens).
also
identified
transcripts
induced
symbiosis.
contents
for
polysaccharide‐degrading
enzymes,
lipases,
proteases
enzymes
involved
secondary
metabolism
are
closer
saprotrophs
pathogens
than
ectomycorrhizal
symbionts.
genes
most
highly
upregulated
coding
cell
wall‐degrading
CWDE
s),
proteases,
transporters
mycorrhiza‐induced
small
secreted
proteins
(Mi
SSP
s).
repertoire
reveals
a
capacity
dual
saprotrophic
biotrophic
lifestyle.
This
may
reflect
an
incomplete
transition
saprotrophy
habit,
or
versatile
life
strategy
similar
endophytes.
Annual Review of Phytopathology,
Journal Year:
2017,
Volume and Issue:
55(1), P. 355 - 375
Published: June 9, 2017
Iron
is
an
essential
nutrient
for
most
life
on
Earth
because
it
functions
as
a
crucial
redox
catalyst
in
many
cellular
processes.
However,
when
present
excess
iron
can
lead
to
the
formation
of
harmful
hydroxyl
radicals.
Hence,
balance
must
be
tightly
controlled.
Perturbation
homeostasis
major
strategy
host-pathogen
interactions.
Plants
use
iron-withholding
strategies
reduce
pathogen
virulence
or
locally
increase
levels
activate
toxic
oxidative
burst.
Some
plant
pathogens
counteract
such
defenses
by
secreting
iron-scavenging
siderophores
that
promote
uptake
and
alleviate
iron-regulated
host
immune
responses.
Mutualistic
root
microbiota
also
influence
disease
via
iron.
They
compete
with
soil-borne
induce
systemic
resistance
shares
early
signaling
components
iron-uptake
machinery.
This
review
describes
progress
our
understanding
role
both
pathogenic
beneficial
plant-microbe
Frontiers in Plant Science,
Journal Year:
2017,
Volume and Issue:
8
Published: Oct. 25, 2017
Studies
of
plant-pathogen
interactions
have
historically
focused
on
simple
models
infection
involving
single
host-single
disease
systems.
However,
plant
infections
often
involve
multiple
species
and/or
genotypes
and
exhibit
complexities
not
captured
in
Here,
we
review
recent
insights
into
co-infection
systems
focusing
the
dynamics
host-multi-pathogen
implications
for
host
susceptibility/resistance.
In
systems,
pathogen
include:
(i)
Competition,
which
competing
pathogens
develop
physical
barriers
or
utilize
toxins
to
exclude
competitors
from
resource-dense
niches;
(ii)
Cooperation,
whereby
beneficially
interact,
by
providing
mutual
biochemical
signals
essential
pathogenesis,
through
functional
complementation
via
exchange
resources
necessary
survival;
(iii)
Coexistence,
can
stably
coexist
niche
specialization.
Furthermore,
hosts
are
also
able
to,
actively
passively,
modulate
competition
defense
responses
that
target
at
least
one
pathogen.
Typically,
however,
virulent
subvert
defenses
facilitate
infection,
elicited
may
be
modified
presence
another
Evidence
exists,
albeit
rare,
incorporating
foreign
genes
broaden
adaptation
improve
virulence.
Throughout
this
review,
draw
upon
examples
a
range
types
identify
outstanding
questions
future
innovation
control
strategies.