Defining the human microbiome DOI

Luke K. Ursell,

Jessica L. Metcalf, Laura Wegener Parfrey

et al.

Nutrition Reviews, Journal Year: 2012, Volume and Issue: 70, P. S38 - S44

Published: Aug. 1, 2012

Rapidly developing sequencing methods and analytical techniques are enhancing our ability to understand the human microbiome, and, indeed, how microbiome its constituents defined. This review highlights recent research that expands on different spatial temporal scales, including daily time series datasets spanning months. Furthermore, emerging concepts related defining operational taxonomic units, diversity indices, core versus transient microbiomes, possibility of enterotypes discussed. Additional advances in technology understanding will provide exciting prospects for exploiting microbiota personalized medicine.

Language: Английский

Diversity, stability and resilience of the human gut microbiota DOI
Catherine Lozupone, Jesse Stombaugh, Jeffrey I. Gordon

et al.

Nature, Journal Year: 2012, Volume and Issue: 489(7415), P. 220 - 230

Published: Sept. 1, 2012

Language: Английский

Citations

4769

The human microbiome: at the interface of health and disease DOI
Ilseung Cho, Martin J. Blaser

Nature Reviews Genetics, Journal Year: 2012, Volume and Issue: 13(4), P. 260 - 270

Published: March 13, 2012

Language: Английский

Citations

3215

Introduction to the human gut microbiota DOI Creative Commons

Elizabeth Thursby,

Nathalie Juge

Biochemical Journal, Journal Year: 2017, Volume and Issue: 474(11), P. 1823 - 1836

Published: May 16, 2017

The human gastrointestinal (GI) tract harbours a complex and dynamic population of microorganisms, the gut microbiota, which exert marked influence on host during homeostasis disease. Multiple factors contribute to establishment microbiota infancy. Diet is considered as one main drivers in shaping across life time. Intestinal bacteria play crucial role maintaining immune metabolic protecting against pathogens. Altered bacterial composition (dysbiosis) has been associated with pathogenesis many inflammatory diseases infections. interpretation these studies relies better understanding inter-individual variations, heterogeneity communities along GI tract, functional redundancy need distinguish cause from effect states dysbiosis. This review summarises our current development its impact integrity health, underlying for mechanistic focusing host–microbe interactions.

Language: Английский

Citations

2809

What is the Healthy Gut Microbiota Composition? A Changing Ecosystem across Age, Environment, Diet, and Diseases DOI Creative Commons
Emanuele Rinninella, Pauline Raoul, Marco Cintoni

et al.

Microorganisms, Journal Year: 2019, Volume and Issue: 7(1), P. 14 - 14

Published: Jan. 10, 2019

Each individual is provided with a unique gut microbiota profile that plays many specific functions in host nutrient metabolism, maintenance of structural integrity the mucosal barrier, immunomodulation, and protection against pathogens. Gut are composed different bacteria species taxonomically classified by genus, family, order, phyla. human's shaped early life as their composition depends on infant transitions (birth gestational date, type delivery, methods milk feeding, weaning period) external factors such antibiotic use. These personal healthy core native remain relatively stable adulthood but differ between individuals due to enterotypes, body mass index (BMI) level, exercise frequency, lifestyle, cultural dietary habits. Accordingly, there not optimal since it for each individual. However, host⁻microorganism balance must be respected order optimally perform metabolic immune prevent disease development. This review will provide an overview studies focus balances same highlight close mutualistic relationship variations diseases. Indeed, dysbiosis associated only intestinal disorders also numerous extra-intestinal diseases neurological disorders. Understanding cause or consequence these health how maintain restore should useful developing promising therapeutic interventions.

Language: Английский

Citations

2721

The skin microbiome DOI
Elizabeth A. Grice, Julia A. Segre

Nature Reviews Microbiology, Journal Year: 2011, Volume and Issue: 9(4), P. 244 - 253

Published: March 16, 2011

Language: Английский

Citations

2696

The ecology of the microbiome: Networks, competition, and stability DOI
Katharine Z. Coyte, Jonas Schlüter, Kevin R. Foster

et al.

Science, Journal Year: 2015, Volume and Issue: 350(6261), P. 663 - 666

Published: Nov. 5, 2015

What makes the gut microbiome stable? Classically, we think of our as stable, benign, and cooperative. Recent experimental work is beginning to unpick essential functions that can be attributed stable microbiota humans. To able manipulate improve health, need understand community structure composition models quantify predict stability. Coyte et al. applied concepts tools from ecology assembly. Independently developed converged on a surprising answer: A high diversity species likely coexist stably when system dominated by competitive, rather than cooperative, interactions. Science , this issue p. 663

Language: Английский

Citations

2180

Gut biogeography of the bacterial microbiota DOI
Gregory P. Donaldson,

S. Melanie Lee,

Sarkis K. Mazmanian

et al.

Nature Reviews Microbiology, Journal Year: 2015, Volume and Issue: 14(1), P. 20 - 32

Published: Oct. 26, 2015

Language: Английский

Citations

2130

Current understanding of the human microbiome DOI
Jack A. Gilbert, Martin J. Blaser, J. Gregory Caporaso

et al.

Nature Medicine, Journal Year: 2018, Volume and Issue: 24(4), P. 392 - 400

Published: April 1, 2018

Language: Английский

Citations

2126

Crohn's disease DOI Open Access
Daniel C. Baumgart, William J. Sandborn

The Lancet, Journal Year: 2012, Volume and Issue: 380(9853), P. 1590 - 1605

Published: Aug. 20, 2012

Language: Английский

Citations

1980

How colonization by microbiota in early life shapes the immune system DOI Open Access
Thomas Gensollen, Shankar S. Iyer, Dennis L. Kasper

et al.

Science, Journal Year: 2016, Volume and Issue: 352(6285), P. 539 - 544

Published: April 28, 2016

Microbial colonization of mucosal tissues during infancy plays an instrumental role in the development and education host mammalian immune system. These early-life events can have long-standing consequences: facilitating tolerance to environmental exposures or contributing disease later life, including inflammatory bowel disease, allergy, asthma. Recent studies begun define a critical period early which disruption optimal host-commensal interactions lead persistent some cases irreversible defects training specific subsets. Here, we discuss system this “window opportunity,” when microbial has potentially impact on human health disease.

Language: Английский

Citations

1723