Time-resolved structure-function coupling in brain networks DOI Creative Commons
Zhen-Qi Liu, Bertha Vázquez-Rodríguez, R. Nathan Spreng

et al.

Communications Biology, Journal Year: 2022, Volume and Issue: 5(1)

Published: June 2, 2022

The relationship between structural and functional connectivity in the brain is a key question systems neuroscience. Modern accounts assume single global structure-function that persists over time. Here we study coupling from dynamic perspective, show it regionally heterogeneous. We use temporal unwrapping procedure to identify moment-to-moment co-fluctuations neural activity, reconstruct time-resolved patterns. find patterns of are region-specific. observe stable unimodal transmodal cortex, intermediate regions, particularly insular cortex (salience network) frontal eye fields (dorsal attention network). Finally, variability region's related distribution its connection lengths. Collectively, our findings provide way relationships perspective.

Language: Английский

Linking Structure and Function in Macroscale Brain Networks DOI Creative Commons
Laura E. Suárez, Ross D. Markello, Richard F. Betzel

et al.

Trends in Cognitive Sciences, Journal Year: 2020, Volume and Issue: 24(4), P. 302 - 315

Published: Feb. 25, 2020

The emergence of network neuroscience allows researchers to quantify the link between organizational features neuronal networks and spectrum cortical functions.Current models indicate that structure function are significantly correlated, but correspondence is not perfect because reflects complex multisynaptic interactions in structural networks.Function cannot be directly estimated from structure, must inferred by higher-order interactions. Statistical, communication, biophysical have been used translate brain function.Structure–function coupling regionally heterogeneous follows molecular, cytoarchitectonic, functional hierarchies. Structure–function relationships a fundamental principle many naturally occurring systems. However, research suggests there an imperfect connectivity brain. Here, we synthesize current state knowledge linking macroscale discuss different types assess this relationship. We argue do include requisite biological detail completely predict function. Structural reconstructions enriched with local molecular cellular metadata, concert more nuanced representations functions properties, hold great potential for truly multiscale understanding structure–function relationship central concept natural sciences engineering. Consider how conformation protein determines its chemical properties and, ultimately, folding into 3D promotes among amino acids, allowing chemically interact other molecules endowing it Conversely, disruption protein's results loss Tellingly, said denatured, highlighting idea changing has fundamentally altered nervous system analogously shaped arrangement neurons populations. synaptic projections forms hierarchy (see Glossary) nested increasingly polyfunctional neural circuits support perception, cognition, action. Modern imaging technology permits high-throughput reconstruction across spatiotemporal scales species (Box 1). 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Rev. 13: 336Crossref (1282) resulting increased prevalence shorter, low-cost [15.Horvát S. al.Spatial embedding cost constrain layout rodents primates.PLoS 14: e1002512Crossref Scholar,16.Roberts J.A. contribution geometry connectome.NeuroImage. 124: 379-393Crossref (60) attributes replicated range tracing techniques, suggesting principles phylogeny [17.Van al.Comparative connectomics.Trends. Cogn. 20: 345-361Abstract (118) imparts distinct signature coactivation patterns. Inter-regional promote signaling synchrony distant populations, giving rise coherent dynamics, measured as regional time series electromagnetic hemodynamic activity. Systematic pairs regions can (FC) networks. Over past decade, these recorded without task instruction stimulation; 'intrinsic' ' resting-state' FC thought reflect spontaneous activity [18.Biswal al.Functional motor cortex resting using echo-planar MRI.Magn. Reson. Med. 1995; 34: 537-541Crossref (5503) Intrinsic highly organized [19.Damoiseaux J. al.Consistent resting-state healthy subjects.Proc. 2006; 103: 13848-13853Crossref (2665) 20.Bellec al.Multi-level bootstrap analysis stable clusters fMRI.NeuroImage. 51: 1126-1139Crossref (170) 21.Thomas Yeo intrinsic connectivity.J. Neurophysiol. 106: 1125-1165Crossref (2040) reproducible [22.Gordon E.M. al.Precision mapping individual brains.Neuron. 2017; 95: 791-807Abstract (140) Scholar,23.Noble decade test-retest reliability connectivity: systematic review meta-analysis.NeuroImage. 2019; : 116157Crossref (5) comparable task-driven [24.Smith S.M. al.Correspondence brain's during activation rest.Proc. 2009; 13040-13045Crossref (2684) Scholar,25.Cole M.W. al.Intrinsic task-evoked architectures brain.Neuron. 83: 238-251Abstract (516) persistent nature rest makes ideal starting point study [26.Honey C.J. al.Can brain?.NeuroImage. 52: 766-776Crossref (291) Scholar,27.Damoiseaux J.S. Greicius M.D. Greater than sum parts: combining connectivity.Brain Struct. Funct. 213: 525-533Crossref Here first show direct one-to-one links limited inherently obscured networked survey modern quantitative methods move away correlations conceptualizing emerging focus strengths, limitations, commonalities. posit next steps network-level take account heterogeneity enriching microscale transcriptomic, neuromodulatory information. close theories uniform brain, vary parallel cytoarchitectonic representational Early emphasized weights. weights correlated [28.Honey C. al.Predicting connectivity.Proc. 2035-2040Crossref (1543) also Furthermore, structurally connected display greater unconnected Scholar,29.Shen K. al.Information processing functionally defined 32: 17465-17476Crossref (63) Scholar (Figure 1A). More globally, networks, particularly visual somatomotor circumscribed dense anatomical [29.Shen 30.Van Den al.Functionally linked brain.Hum. Brain Mapp. 30: 3127-3141Crossref (625) 31.Alves P.N. al.An improved neuroanatomical default-mode reconciles previous neuroimaging neuropathological findings.Commun. 2: 1-14Crossref While perfect. Even best-case estimates place correlation R2 ≈ 0.5 which means considerable variance (at least half) unexplained simple 1:1 structure. discrepancy widens case 1B ). A salient example homotopic corresponding structures two hemispheres. typically strongest subset [32.Mišić landscape One. 9: e111007Crossref (14) all supported callosal projection [33.Shen al.Stable long-range interhemispheric coordination projections.Proc. 6473-6478Crossref (52) strong may observed even individuals no [34.Uddin L.Q. al.Residual split-brain revealed fMRI.Neuroreport. 19: 703Crossref (96) 35.O'Reilly J.X. al.Causal effect disconnection lesions rhesus monkeys.Proc. 110: 13982-13987Crossref (106) 36.Layden E.A. al.Interhemispheric zebra finch absent corpus callosum normal ontogeny.NeuroImage. Crossref (1) examples illustrate sustained communication via indirect manifest FC. discordance pronounced mesoscopic scale. commonly meta-analytic recovered [37.Mišić al.Cooperative competitive spreading connectome.Neuron. 86: 1518-1529Abstract Scholar,38.Betzel R.F. al.Diversity meso-scale non-human connectomes.Nat. Commun. 2018; 346Crossref (21) 1C). reproducibly independent component community detection [39.Power J.D. 72: 665-678Abstract (1499) data-driven [20.Bellec Scholar,21.Thomas both recordings application diffusion-weighted covariance yields contiguous Scholar,40.Betzel modular networks: accounting wiring.Net. 42-68Crossref For example, fail identify default mode-like network, perhaps parts anatomically inter-connected differences. evidence assortative mixing, whereby (e.g., degrees) likely connected, whereas same true [50.Lim al.Discordant two-layer multiplex network.Sci. Rep. 2885Crossref (2) At scale, communities assortative, while disassortative [38.Betzel In words, affinity dissimilar attributes. As result, tuning algorithms sensitive improves match Altogether, rich body work demonstrates spans scales, edges their arrangement. Why FC? Functional arise connections, courses synapses removed other. propensity correlate driven only them, inputs they receive sensory organs entire [27.Damoiseaux Scholar,51.Bettinardi R.G. al.How sculpts function: unveiling structure.Chaos. 27: 047409Crossref (12) corollary much less distance-dependent connections. Anatomical subject material, spatial, constraints Scholar]; pressures reduced probability weight increasing spatial separation Although distance-dependence FC, weaker, ensuring differences configurations. section consider emergent property links. seen so far, exists nontrivial perfectly aligned. number emerged embody link, statistical [41.Mišić al.Network-level structure-function neocortex.Cereb. 26: 3285-3296Crossref (153) Scholar,42.Messé A. al.Relating relative contributions anatomy, stationary non-stationarities.PLoS. 10: e1003530Crossref Scholar,43.Graham D. Rockmore packet switching brain.J. 23: 267-276Crossref (18) 44.Goñi al.Resting-brain predicted analytic measures 111: 833-838Crossref (208) 45.Crofts J.J. Higham communicability measure applied networks.J. Interf. 411-414Crossref (61) [46.Honey al.Network shapes scales.Proc. 2007; 104: 10240-10245Crossref (941) 47.Breakspear Dynamic large-scale activity.Nat. 340Crossref (147) 48.Sanz-Leon al.Mathematical framework modeling Virtual Brain.NeuroImage. 385-430Crossref 49.Deco al.Key role coupling, delay, noise fluctuations.Proc. 10302-10307Crossref (372) Though implementation assumptions, emphasize collective, transcends geometric dependence dyadic relationships. briefly strategies, interpretation predictive utility, most importantly, what teach us about Perhaps simplest way statistically. Varying rank regression useful, canonical [52.Deligianni F. al.NODDI tensor-based microstructural indices predictors connectivity.PLoS 11: e0153404Crossref (13) partial squares objective simultaneously combinations maximally [53.McIntosh A.R. Mišić Multivariate analyses data.Annu. Psychol. 64: 499-525Crossref (73) 2). An appealing such modes. particular configuration subnetwork give Taking further, artificial learn recent variant word2vec algorithm build low-dimensional representation train deep edge-wise [54.Rosenthal relations embedded vector 2178Crossref (3) offer associate assuming specific mode interaction Communication science telecommunication engineering conceptualize superposition elementary events [43.Graham Scholar,55.Avena-Koenigsberger al.Communication networks.Nat. 17Crossref (92) By explicitly formulating inter-regional signaling, open important questions, namely: biologically realistic model, well does fit network? focused centralized shortest routing, discrete travel set source node prespecified target node. recently, attention shifted decentralized mechanisms where diffuse through [56.Mišić convergence zone hippocampus.PLoS. e1003982Crossref Scholar,57.Atasoy al.Human connectome-specific harmonic waves.Nat. 10340Crossref often broadcast fronts Scholar,58.Abdelnour diffusion accurately networks.NeuroImage. 90: 335-347Crossref (71) Scholar,59.Worrell J.C. al.Optimized sensory-motor integration.Net. 415-430Crossref Others considered neither fully nor decentralized, ensembles [45.Crofts Scholar,60.Avena-Koenigsberger al.Path tradeoff efficiency resilience connectome.Brain 222: 603-618Crossref (17) multiplexed strategies involving [44.Goñi Scholar,61.Avena-Koenigsberger routing networks.PLoS 15: e1006833Crossref 62.Betzel al.Structural, genetic factors interregional probed electrocorticography.Nat. Biomed. Eng. 63.Vazquez-Rodriguez al.Gradients tethering neocortex.Proc. 116: 21219-21227Crossref (6) consensus that, given topological proximity possible utilize either al.Re

Language: Английский

Citations

672

Gradients of structure–function tethering across neocortex DOI Creative Commons
Bertha Vázquez-Rodríguez, Laura E. Suárez, Ross D. Markello

et al.

Proceedings of the National Academy of Sciences, Journal Year: 2019, Volume and Issue: 116(42), P. 21219 - 21227

Published: Sept. 30, 2019

The white matter architecture of the brain imparts a distinct signature on neuronal coactivation patterns. Interregional projections promote synchrony among distant populations, giving rise to richly patterned functional networks. A variety statistical, communication, and biophysical models have been proposed study relationship between structure function, but link is not yet known. In present report we seek relate structural connection profiles individual areas. We apply simple multilinear model that incorporates information about spatial proximity, routing, diffusion regions predict their connectivity. find structure–function relationships vary markedly across neocortex. Structure function correspond closely in unimodal, primary sensory, motor regions, diverge transmodal cortex, particularly default mode salience divergence systematically follows cytoarchitectonic hierarchies. Altogether, results demonstrate networks do align uniformly brain, gradually uncouple higher-order polysensory

Language: Английский

Citations

469

Specificity and robustness of long-distance connections in weighted, interareal connectomes DOI Creative Commons
Richard F. Betzel, Danielle S. Bassett

Proceedings of the National Academy of Sciences, Journal Year: 2018, Volume and Issue: 115(21)

Published: May 8, 2018

Brain areas' functional repertoires are shaped by their incoming and outgoing structural connections. In empirically measured networks, most connections short, reflecting spatial energetic constraints. Nonetheless, a small number of span long distances, consistent with the notion that functionality these must outweigh cost. While precise function long-distance is not known, leading hypothesis they act to reduce topological distance between brain areas facilitate efficient interareal communication. However, this implies non-specificity we contend unlikely. Instead, propose serve diversify inputs outputs, thereby promoting complex dynamics. Through analysis five network datasets, show play only minor roles in reducing average distance. contrast, short-range neighbors exhibit marked differences connectivity profiles, suggesting enhance dissimilarity regional outputs. Next, -- isolation profiles non-random levels similarity, communication pathways formed redundancies may promote robustness. Finally, use linearization Wilson-Cowan dynamics simulate covariance structure neural activity absence connections, common measure diversity decreases. Collectively, our findings suggest necessary for supporting diverse

Language: Английский

Citations

220

Quantitative mapping of the brain’s structural connectivity using diffusion MRI tractography: A review DOI Creative Commons
Fan Zhang, Alessandro Daducci, Yong He

et al.

NeuroImage, Journal Year: 2022, Volume and Issue: 249, P. 118870 - 118870

Published: Jan. 1, 2022

Diffusion magnetic resonance imaging (dMRI) tractography is an advanced technique that enables in vivo reconstruction of the brain's white matter connections at macro scale. It provides important tool for quantitative mapping structural connectivity using measures or tissue microstructure. Over last two decades, study brain dMRI has played a prominent role neuroimaging research landscape. In this paper, we provide high-level overview how used to enable analysis health and disease. We focus on types analyses tractography, including: 1) tract-specific refers typically hypothesis-driven studies particular anatomical fiber tracts, 2) connectome-based more data-driven generally entire brain. first review methodology involved three main processing steps are common across most approaches including methods correction, segmentation quantification. For each step, aim describe methodological choices, their popularity, potential pros cons. then have matter, focusing applications neurodevelopment, aging, neurological disorders, mental neurosurgery. conclude that, while there been considerable advancements technologies breadth applications, nevertheless remains no consensus about "best" researchers should remain cautious when interpreting results clinical applications.

Language: Английский

Citations

193

Graph Neural Networks in Network Neuroscience DOI
Alaa Bessadok, Mohamed Ali Mahjoub, Islem Rekik

et al.

IEEE Transactions on Pattern Analysis and Machine Intelligence, Journal Year: 2022, Volume and Issue: 45(5), P. 5833 - 5848

Published: Sept. 26, 2022

Noninvasive medical neuroimaging has yielded many discoveries about the brain connectivity. Several substantial techniques mapping morphological, structural and functional connectivities were developed to create a comprehensive road map of neuronal activities in human -namely graph. Relying on its non-euclidean data type, graph neural network (GNN) provides clever way learning deep structure it is rapidly becoming state-of-the-art leading enhanced performance various neuroscience tasks. Here we review current GNN-based methods, highlighting ways that they have been used several applications related graphs such as missing synthesis disease classification. We conclude by charting path toward better application GNN models field for neurological disorder diagnosis population integration. The list papers cited our work available at https://github.com/basiralab/GNNs-in-Network-Neuroscience.

Language: Английский

Citations

166

Network geometry DOI
Marián Boguñá, Ivan Bonamassa, Manlio De Domenico

et al.

Nature Reviews Physics, Journal Year: 2021, Volume and Issue: 3(2), P. 114 - 135

Published: Jan. 29, 2021

Language: Английский

Citations

156

Null models in network neuroscience DOI
František Váša, Bratislav Mišić

Nature reviews. Neuroscience, Journal Year: 2022, Volume and Issue: 23(8), P. 493 - 504

Published: May 31, 2022

Language: Английский

Citations

136

Brain network dynamics during working memory are modulated by dopamine and diminished in schizophrenia DOI Creative Commons
Urs Braun, Anais Harneit, Giulio Pergola

et al.

Nature Communications, Journal Year: 2021, Volume and Issue: 12(1)

Published: June 9, 2021

Abstract Dynamical brain state transitions are critical for flexible working memory but the network mechanisms incompletely understood. Here, we show that performance entails brain-wide switching between activity states using a combination of functional magnetic resonance imaging in healthy controls and individuals with schizophrenia, pharmacological fMRI, genetic analyses control theory. The stability relates to dopamine D1 receptor gene expression while influenced by D2 modulation. Individuals schizophrenia altered properties, including more diverse energy landscape decreased representations. Our results demonstrate relevance signaling steering whole-brain dynamics during link these processes pathophysiology.

Language: Английский

Citations

134

Brain network communication: concepts, models and applications DOI
Caio Seguin, Olaf Sporns, Andrew Zalesky

et al.

Nature reviews. Neuroscience, Journal Year: 2023, Volume and Issue: 24(9), P. 557 - 574

Published: July 12, 2023

Language: Английский

Citations

129

Local structure-function relationships in human brain networks across the lifespan DOI Creative Commons
Farnaz Zamani Esfahlani, Joshua Faskowitz,

Jonah Slack

et al.

Nature Communications, Journal Year: 2022, Volume and Issue: 13(1)

Published: April 19, 2022

Abstract A growing number of studies have used stylized network models communication to predict brain function from structure. Most focused on a small set applied globally. Here, we compare large at both global and regional levels. We find that globally most predictors perform poorly. At the level, performance improves but heterogeneously, in terms variance explained optimal model. Next, expose synergies among by using pairs jointly FC. Finally, assess age-related differences coupling across human lifespan. decreases magnitude structure-function with age. these are driven reduced sensorimotor regions, while higher-order cognitive systems preserve local Our results describe patterns cortex how this may change

Language: Английский

Citations

116