In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism DOI Creative Commons
María S. Robles,

Jürgen Cox,

Matthias Mann

et al.

PLoS Genetics, Journal Year: 2014, Volume and Issue: 10(1), P. e1004047 - e1004047

Published: Jan. 2, 2014

Circadian clocks are endogenous oscillators that drive the rhythmic expression of a broad array genes, orchestrating metabolism and physiology. Recent evidence indicates post-transcriptional post-translational mechanisms play essential roles in modulating temporal gene for proper circadian function, particularly molecular mechanism clock. Due to technical limitations large-scale, quantitative protein measurements, it remains unresolved what extent clock regulates by driving rhythms abundance. Therefore, we aimed identify global oscillations proteome mouse liver applying vivo SILAC technology combination with state art mass spectrometry. Among 3000 proteins accurately quantified across two consecutive cycles, 6% showed defined phase expression. Interestingly, daily one fifth were not accompanied changes at transcript level. The almost half cycling delayed more than six hours respect corresponding, mRNA. Strikingly observed length time lag between mRNA cycles varies day. Our analysis revealed high coordination abundance involved same metabolic process, such as xenobiotic detoxification. Apart from specific pathways, identified many other cellular processes which levels under control, instance vesicle trafficking folding. large-scale proteomic reveals thus key role orchestration

Language: Английский

Transcriptional architecture of the mammalian circadian clock DOI
Joseph S. Takahashi

Nature Reviews Genetics, Journal Year: 2016, Volume and Issue: 18(3), P. 164 - 179

Published: Dec. 19, 2016

Language: Английский

Citations

2153

A circadian gene expression atlas in mammals: Implications for biology and medicine DOI Open Access
Ray Zhang, Nicholas F. Lahens, Heather Ballance

et al.

Proceedings of the National Academy of Sciences, Journal Year: 2014, Volume and Issue: 111(45), P. 16219 - 16224

Published: Oct. 27, 2014

Significance We generated high-resolution multiorgan expression data showing that nearly half of all genes in the mouse genome oscillate with circadian rhythm somewhere body. Such widespread transcriptional oscillations have not been previously reported mammals. Applying pathway analysis, we observed new clock-mediated spatiotemporal relationships. Moreover, found a majority best-selling drugs United States target gene products. Many these relatively short half-lives, and our predict which may benefit from timed dosing.

Language: Английский

Citations

2071

Post-transcriptional gene regulation by mRNA modifications DOI Open Access
Boxuan Zhao,

Ian A. Roundtree,

Chuan He

et al.

Nature Reviews Molecular Cell Biology, Journal Year: 2016, Volume and Issue: 18(1), P. 31 - 42

Published: Nov. 3, 2016

Language: Английский

Citations

1934

Molecular architecture of the mammalian circadian clock DOI
Carrie L. Partch, Carla B. Green, Joseph S. Takahashi

et al.

Trends in Cell Biology, Journal Year: 2013, Volume and Issue: 24(2), P. 90 - 99

Published: Aug. 1, 2013

Language: Английский

Citations

1249

T cell metabolism drives immunity DOI Open Access
Michael D. Buck, David O’Sullivan, Erika L. Pearce

et al.

The Journal of Experimental Medicine, Journal Year: 2015, Volume and Issue: 212(9), P. 1345 - 1360

Published: Aug. 10, 2015

Lymphocytes must adapt to a wide array of environmental stressors as part their normal development, during which they undergo dramatic metabolic remodeling process. Research in this area has yielded surprising findings on the roles diverse pathways and metabolites, have been found regulate lymphocyte signaling influence differentiation, function fate. In review, we integrate latest field provide an up-to-date resource metabolism.

Language: Английский

Citations

1000

Molecular mechanisms and physiological importance of circadian rhythms DOI
Alina Patke, Michael W. Young, Sofia Axelrod

et al.

Nature Reviews Molecular Cell Biology, Journal Year: 2019, Volume and Issue: 21(2), P. 67 - 84

Published: Nov. 25, 2019

Language: Английский

Citations

977

RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock DOI Creative Commons
Jean‐Michel Fustin, Masao Doi, Yoshiaki Yamaguchi

et al.

Cell, Journal Year: 2013, Volume and Issue: 155(4), P. 793 - 806

Published: Nov. 1, 2013

Language: Английский

Citations

888

Circadian physiology of metabolism DOI Open Access
Satchidananda Panda

Science, Journal Year: 2016, Volume and Issue: 354(6315), P. 1008 - 1015

Published: Nov. 24, 2016

A majority of mammalian genes exhibit daily fluctuations in expression levels, making circadian rhythms the largest known regulatory network normal physiology. Cell-autonomous clocks interact with light-dark and feeding-fasting cycles to generate approximately 24-hour oscillations function thousands genes. Circadian secreted molecules signaling components transmits timing information between cells tissues. Such intra- intercellular optimize physiology both by managing energy use temporally segregating incompatible processes. Experimental animal models epidemiological data indicate that chronic rhythm disruption increases risk metabolic diseases. Conversely, time-restricted feeding, which imposes feeding fasting without caloric reduction, sustains robust diurnal can alleviate These findings highlight an integrative role offer a new perspective for treating diseases is hallmark.

Language: Английский

Citations

887

Fasting, Circadian Rhythms, and Time-Restricted Feeding in Healthy Lifespan DOI Creative Commons
Valter D. Longo, Satchidananda Panda

Cell Metabolism, Journal Year: 2016, Volume and Issue: 23(6), P. 1048 - 1059

Published: June 1, 2016

Language: Английский

Citations

778

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations DOI Creative Commons
Christoph A. Thaiss, Maayan Levy, Tal Korem

et al.

Cell, Journal Year: 2016, Volume and Issue: 167(6), P. 1495 - 1510.e12

Published: Dec. 1, 2016

Language: Английский

Citations

726