Tagless LysoIP for immunoaffinity enrichment of native lysosomes from clinical samples DOI Creative Commons
Daniel Saarela, Paweł Lis, Sara Gomes

et al.

Journal of Clinical Investigation, Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 26, 2024

Lysosomes are implicated in a wide spectrum of human diseases including monogenic lysosomal storage disorders (LSDs), age-associated neurodegeneration and cancer. Profiling content using tag-based immunoprecipitation (LysoTagIP) cell animal models has substantially moved the field forward, but studying dysfunction patients remains challenging. Here, we report development 'tagless LysoIP' method, designed to enable rapid enrichment lysosomes, via immunoprecipitation, endogenous integral membrane protein TMEM192, directly from clinical samples lines (e.g., induced pluripotent stem derived neurons). Isolated lysosomes were intact suitable for subsequent multimodal omics analyses. To validate our approach, applied tagless LysoIP enrich peripheral blood mononuclear cells fresh healthy donors with CLN3 disease, an autosomal recessive neurodegenerative LSD. Metabolic profiling isolated revealed massive accumulation glycerophosphodiesters (GPDs) patients' lysosomes. Interestingly, patient milder phenotype genotype displayed lower GPDs, consistent their potential role as disease biomarkers. Altogether, provides framework study native samples, identify biomarkers, discover human-relevant mechanisms.

Language: Английский

A lipidome landscape of aging in mice DOI
Hiroshi Tsugawa, Tomoaki Ishihara,

Kota Ogasa

et al.

Nature Aging, Journal Year: 2024, Volume and Issue: 4(5), P. 709 - 726

Published: April 12, 2024

Language: Английский

Citations

17

Glycerophosphodiesters inhibit lysosomal phospholipid catabolism in Batten disease DOI Creative Commons
Kwamina Nyame, Andy Hims,

Aya Aburous

et al.

Molecular Cell, Journal Year: 2024, Volume and Issue: 84(7), P. 1354 - 1364.e9

Published: March 5, 2024

Batten disease, the most prevalent form of neurodegeneration in children, is caused by mutations CLN3 gene, which encodes a lysosomal transmembrane protein. loss leads to significant accumulation glycerophosphodiesters (GPDs), end products glycerophospholipid catabolism lysosome. Despite GPD storage being robustly observed upon loss, role GPDs neuropathology remains unclear. Here, we demonstrate that act as potent inhibitors lysosome using human cell lines and mouse models. Mechanistically, bind competitively inhibit phospholipases PLA2G15 PLBD2, establish possess phospholipase B activity. effectively rate-limiting lysophospholipase activity these phospholipases. Consistently, lysosomes CLN3-deficient cells tissues accumulate toxic lysophospholipids. Our work establishes material disease directly disrupts lipid homeostasis, suggesting clearance potential therapeutic approach this fatal disease.

Language: Английский

Citations

11

Gaucher disease provides a unique window into Parkinson disease pathogenesis DOI
Ellen Hertz, Yu Chen, Ellen Sidransky

et al.

Nature Reviews Neurology, Journal Year: 2024, Volume and Issue: 20(9), P. 526 - 540

Published: Aug. 6, 2024

Language: Английский

Citations

11

Role of lipids in interorganelle communication DOI
Neuza Domingues, Joana Pires, Ira Milošević

et al.

Trends in Cell Biology, Journal Year: 2024, Volume and Issue: unknown

Published: June 1, 2024

Language: Английский

Citations

10

A conserved complex lipid signature marks human muscle aging and responds to short-term exercise DOI
Georges E. Janssens, Marte Molenaars, Katharina Herzog

et al.

Nature Aging, Journal Year: 2024, Volume and Issue: 4(5), P. 681 - 693

Published: April 12, 2024

Language: Английский

Citations

9

PLD3 and PLD4 synthesize S,S-BMP, a key phospholipid enabling lipid degradation in lysosomes DOI Creative Commons
Shubham Singh,

Ulrich E Dransfeld,

Yohannes Abere Ambaw

et al.

Cell, Journal Year: 2024, Volume and Issue: unknown

Published: Oct. 1, 2024

Language: Английский

Citations

8

The Bis(monoacylglycero)-phosphate Hypothesis: From Lysosomal Function to Therapeutic Avenues DOI
Uche N. Medoh, Monther Abu-Remaileh

Annual Review of Biochemistry, Journal Year: 2024, Volume and Issue: 93(1), P. 447 - 469

Published: April 11, 2024

Lysosomes catabolize and recycle lipids other biological molecules to maintain cellular homeostasis in diverse nutrient environments. Lysosomal lipid catabolism relies on the stimulatory activity of bis(monoacylglycero)phosphate (BMP), an enigmatic whose levels are altered across myriad lysosome-associated diseases. Here, we review discovery BMP over half a century ago its structural properties that facilitate activation hydrolases recruitment their coactivators. We further discuss current, yet incomplete, understanding anabolism. To conclude, role diseases potential for modulating by pharmacologically activating inhibiting synthase therapeutically target lysosomal storage disorders, drug-induced phospholipidosis, Alzheimer's disease, Parkinson's frontotemporal dementia, cancer, viral infection.

Language: Английский

Citations

5

Programming Intracellular Clustering of Spiky Nanoparticles via Liposome Encapsulation DOI
Lulu Huang, Xiuhai Mao,

B. Liu

et al.

ACS Nano, Journal Year: 2024, Volume and Issue: 18(11), P. 8051 - 8061

Published: March 6, 2024

The intracellular clustering of anisotropic nanoparticles is crucial to the improvement localized surface plasmon resonance (LSPR) for phototherapy applications. Herein, we programmed process spiky (SNPs) by encapsulating them into an anionic liposome via a frame-guided self-assembly approach. liposome-encapsulated SNPs (lipo-SNPs) exhibited distinct and enhanced lysosome-triggered aggregation behavior while maintaining excellent monodispersity, even in acidic or protein-rich environments. We explored enhancement photothermal therapy performance as proof concept. conversion efficiency lipo-SNPs clusters significantly increased 15 times compared that single lipo-SNPs. Upon accumulation lysosomes with 2.4-fold increase clustering, resulted cell-killing 45% from 12% at 24 μg/mL. These findings indicated encapsulation provides promising approach programing nanoparticle target site, which facilitates advances development smart nanomedicine programmable LSPR.

Language: Английский

Citations

4

Tagless LysoIP method for molecular profiling of lysosomal content in clinical samples DOI Creative Commons
Daniel Saarela, Paweł Lis, Sara Gomes

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2024, Volume and Issue: unknown

Published: May 19, 2024

Abstract Lysosomes are implicated in a wide spectrum of human diseases including monogenic lysosomal storage disorders (LSDs), age-associated neurodegeneration and cancer. Profiling content using tag-based immunoprecipitation (LysoTagIP) cell animal models allowed major discoveries the field, however studying dysfunction patients remains challenging. Here, we report development “tagless LysoIP method” to enable rapid enrichment lysosomes, via immunoprecipitation, endogenous integral membrane protein TMEM192, directly from clinical samples lines (e.g. induced Pluripotent Stem Cell (iPSCs) derived neurons). Isolated lysosomes intact suitable for subsequent multimodal omics analyses. To validate our approach, employed tagless enrich peripheral blood mononuclear cells (PBMCs) fresh with CLN3 disease, neurodegenerative LSD. Metabolic profiling isolated showed massive accumulation glycerophosphodiesters (GPDs) patients’ lysosomes. Interestingly, patient milder phenotype genotype displayed lower GPDs, consistent their potential role as disease biomarkers. Altogether, provides framework study native samples, identify novel biomarkers discover human-relevant mechanisms.

Language: Английский

Citations

4

CLN5 deficiency impairs glucose uptake in Batten disease DOI Open Access
Maria Marchese, Sara Bernardi,

R Vivarelli

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 2, 2025

Abstract CLN5 disease, a form of juvenile dementia within the neuronal ceroid lipofuscinosis (NCL), is associated with mutations in gene encoding lysosomal bis(monoacylglycero)phosphate (BMP) synthase, essential for BMP production and function. Limited knowledge cellular mechanisms unclear drug targets hinder translating this to children’s treatment, which remains symptomatic. We developed characterized new cln5 knock-out zebrafish model that replicates key features molecular signatures human disease. Loss Cln5 function vivo altered axonal growth retinal ON-bipolar cells revealing disease features. Additionally, multi-omic analyzes at different developmental stages, revealed an impaired glucose metabolism as original finding NCL. This work demonstrates profound metabolic impact dysfunction, offering promising avenue toward targeted therapies dementia.

Language: Английский

Citations

0