Identifying Necroptosis Signature Genes Based on Machine Learning for Evaluating COVID-19 Progression DOI
T. Feng, Yitong Li, Yue Wu

et al.

Published: Oct. 20, 2023

Backgrounds: COVID-19 has impaired the health of many people around world since 2019. In recent years, necroptosis been defined as a crucial cell death in diseases well an association with COVID-19. However, mechanism remains to be excavated. Methods: The GEO series was used get different expression genes. Intersected genes, necroptosis-related genes were got and work on enrichment analysis. LASSO regression algorithm applied selected signature associated progression. Then we analyzed correlation tissue locations these Immune infiltration use R script. To find regulatory targets, networks TF miRNA built. LINCS database carried out potential drugs. Results: 17 DEGs enriched several progress represented by cytoplasmic transcription. We obtained 9 through algorithm, including TP53I3, CDK1, MAPK14, AURKA, PGLYRP1, VIL1, TRAF5, ZBP1, CYLD. These showed strong correlation. Analysis differences immune patients non-severe severe One transcription factor 5 miRNAs identified networks. 10 drugs predicted useful. Conclusion: Our results revealed that could evaluate development COVID-19, targets have treatment potential. findings provide novel information for

Language: Английский

Cigarette Smoke-Induced Respiratory Response: Insights into Cellular Processes and Biomarkers DOI Creative Commons

Sang-Ryul Cha,

Jimin Jang, Sung‐Min Park

et al.

Antioxidants, Journal Year: 2023, Volume and Issue: 12(6), P. 1210 - 1210

Published: June 3, 2023

Cigarette smoke (CS) poses a significant risk factor for respiratory, vascular, and organ diseases owing to its high content of harmful chemicals reactive oxygen species (ROS). These substances are known induce oxidative stress, inflammation, apoptosis, senescence due their exposure environmental pollutants the presence enzymes. The lung is particularly susceptible stress. Persistent stress caused by chronic CS can lead respiratory such as obstructive pulmonary disease (COPD), fibrosis (PF), cancer. Avoiding pollutants, like cigarette air pollution, help mitigate A comprehensive understanding impact on lungs requires future research. This includes identifying strategies preventing treating well investigating underlying mechanisms behind Thus, this review aims investigate cellular processes induced CS, specifically senescence, associated biomarkers. Furthermore, will delve into alveolar response provoked emphasizing roles potential therapeutic target markers in inflammation

Language: Английский

Citations

41

Pathophysiological mechanisms of ARDS: a narrative review from molecular to organ-level perspectives DOI Creative Commons
Kaihuan Zhou, Qianqian Qin, Junyu Lu

et al.

Respiratory Research, Journal Year: 2025, Volume and Issue: 26(1)

Published: Feb. 13, 2025

Acute respiratory distress syndrome (ARDS) remains a life-threatening pulmonary condition with persistently high mortality rates despite significant advancements in supportive care. Its complex pathophysiology involves an intricate interplay of molecular and cellular processes, including cytokine storms, oxidative stress, programmed cell death, disruption the alveolar-capillary barrier. These mechanisms drive localized lung injury contribute to systemic inflammatory response multiple organ dysfunction syndrome. Unlike prior reviews that primarily focus on isolated mechanisms, this narrative review synthesizes key pathophysiological processes ARDS across molecular, cellular, tissue, levels. By integrating classical theories recent research advancements, we provide comprehensive analysis how mediators, metabolic reprogramming, immune dysregulation synergistically onset progression. Furthermore, critically evaluate current evidence-based therapeutic strategies, such as lung-protective ventilation prone positioning, while exploring innovative therapies, stem therapy, gene immunotherapy. We emphasize significance subtypes their inherent heterogeneity guiding development personalized treatment strategies. This provides fresh perspectives for future research, ultimately enhancing patient outcomes optimizing management approaches ARDS.

Language: Английский

Citations

1

Renin-Angiotensin System and Sex Differences in COVID-19: A Critical Assessment DOI Creative Commons
Mark C. Chappell

Circulation Research, Journal Year: 2023, Volume and Issue: 132(10), P. 1320 - 1337

Published: May 11, 2023

The current epidemic of corona virus disease (COVID-19) has resulted in an immense health burden that became the third leading cause death and potentially contributed to a decline life expectancy United States. severe acute respiratory syndrome-related coronavirus-2 binds surface-bound peptidase angiotensin-converting enzyme 2 (ACE2, EC 3.4.17.23) tissue infection viral replication. ACE2 is important enzymatic component renin-angiotensin system (RAS) expressed lung other organs. regulates levels peptide hormones Ang II Ang-(1–7), which have distinct opposing actions one another, as well cardiovascular peptides. A potential consequence reduced activity by internalization viral-ACE2 complex subsequent activation RAS (higher ratio II:Ang-[1–7]) may exacerbate inflammatory events COVID-19 patients possibly contribute effects long COVID-19. Moreover, present with array autoantibodies various components including II, ACE2, AT 1 Mas receptors. Greater severity also evident male patients, reflect underlying sex differences regulation functional arms RAS. review provides critical evaluation evidence for activated subjects whether this contributes greater males compared females.

Language: Английский

Citations

21

Ferroptosis and pyroptosis signatures in critical COVID-19 patients DOI Creative Commons
Cédric Peleman, Samya Van Coillie,

Symen Ligthart

et al.

Cell Death and Differentiation, Journal Year: 2023, Volume and Issue: 30(9), P. 2066 - 2077

Published: Aug. 15, 2023

Abstract Critical COVID-19 patients admitted to the intensive care unit (ICU) frequently suffer from severe multiple organ dysfunction with underlying widespread cell death. Ferroptosis and pyroptosis are two detrimental forms of regulated death that could constitute new therapeutic targets. We enrolled 120 critical in a two-center prospective cohort study monitor systemic markers ferroptosis, iron dyshomeostasis, pyroptosis, pneumocyte damage on first three consecutive days after ICU admission. Plasma 20 post-operative (PO) 39 healthy controls (HC) without failure served as controls. Subsets displayed increases individual biomarkers compared Unsupervised clustering was used discern latent clusters based biomarker profiles. Pyroptosis-related interleukin-18 accompanied by high independently associated higher odds at mechanical ventilation, while subgroup interleuking-1 beta (but limited death) reduced ventilation lower mortality hazard. Meanwhile, dyshomeostasis tendency towards ferroptosis marker malondialdehyde had no association outcome, except for small subset very catalytic survival. Forty percent did not have clear signature mechanisms studied this cohort. Moreover, repeated moderate levels soluble receptor advanced glycation end products growth differentiation factor 15 during admission adverse clinical outcome sustained levels. Altogether, data point distinct subgroups different signatures or outcomes ICU. The groups may allow ‘personalized’ treatment allocation

Language: Английский

Citations

20

Alveolar epithelial cells mitigate neutrophilic inflammation in lung injury through regulating mitochondrial fatty acid oxidation DOI Creative Commons
Kuei‐Pin Chung, Chih‐Ning Cheng,

Yi‐Jung Chen

et al.

Nature Communications, Journal Year: 2024, Volume and Issue: 15(1)

Published: Aug. 22, 2024

Type 2 alveolar epithelial (AT2) cells of the lung are fundamental in regulating inflammation response to injury. Impaired mitochondrial long-chain fatty acid β-oxidation (mtLCFAO) AT2 is assumed aggravate acute injury (ALI), yet importance mtLCFAO cell function needs be defined. Here we show that expression carnitine palmitoyltransferase 1a (CPT1a), a rate limiting enzyme, significantly decreased respiratory distress syndrome (ARDS). In mice, Cpt1a deletion impairs without reducing ATP production and alters surfactant phospholipid abundance alveoli. Impairing via deleting either or Acadl (acyl-CoA dehydrogenase long chain) restricts ALI by hindering neutrophilic chemokine CXCL2 from cells. This study thus highlights as immunometabolism suggests impaired an anti-inflammatory ARDS. type thought Here, authors enzyme CPT1a syndrome, highlighting role this context.

Language: Английский

Citations

8

Identification of FasL as a crucial host factor driving COVID-19 pathology and lethality DOI Creative Commons

Marie‐Christine Albert,

Iratxe Uranga-Murillo,

Maykel Arias

et al.

Cell Death and Differentiation, Journal Year: 2024, Volume and Issue: 31(5), P. 544 - 557

Published: March 21, 2024

Abstract The dysregulated immune response and inflammation resulting in severe COVID-19 are still incompletely understood. Having recently determined that aberrant death-ligand-induced cell death can cause lethal inflammation, we hypothesized this process might also or contribute to inflammatory disease lung failure following SARS-CoV-2 infection. To test hypothesis, developed a novel mouse-adapted model (MA20) recapitulates key pathological features of COVID-19. Concomitantly with occurrence FasL expression was significantly increased on monocytic macrophages NK cells the lungs MA20-infected mice. Importantly, therapeutic inhibition markedly survival both, young old mice coincident substantially reduced their lungs. Intriguingly, bronchoalveolar lavage fluid critically-ill patients. Together, these results identify as crucial host factor driving immuno-pathology underlies severity lethality, imply patients may benefit from FasL.

Language: Английский

Citations

7

Acute lung injury: a view from the perspective of necroptosis DOI

Jinyan Dong,

Weihong Liu, Wenli Liu

et al.

Inflammation Research, Journal Year: 2024, Volume and Issue: 73(6), P. 997 - 1018

Published: April 14, 2024

Language: Английский

Citations

7

Global prevalence of COVID-19-induced acute respiratory distress syndrome: systematic review and meta-analysis DOI Creative Commons
Abere Woretaw Azagew, Zerko Wako Beko,

Yohannes Mulu Ferede

et al.

Systematic Reviews, Journal Year: 2023, Volume and Issue: 12(1)

Published: Nov. 13, 2023

Abstract Background Acute respiratory distress syndrome (ARDS) is potentially a fatal form of failure among COVID-19 patients. Globally, there are inconsistent findings regarding ARDS Therefore, this study aimed to estimate the pooled prevalence COVID-19-induced patients worldwide. Methods To retrieve relevant studies, authors searched Embase, MEDLINE, PubMed, Web Science, Cochrane Library, Google, and Google Scholar using combination search terms. The was conducted for articles published from December 2019 September 2022. Articles were screened by title (ti), abstract (ab), full-text (ft) two reviewers independently. quality each included article assessed Newcastle–Ottawa Assessment Scale. Data entered into Microsoft Word exported Stata version 14 analysis. Heterogeneity detected Q statistics I -square ( 2 ). Then sources variations identified subgroup meta-regression A random effect meta-analysis model used. publication bias graphic asymmetry test funnel plot and/or Egger’s p value < 0.05). treat potential bias, trim fill analysis computed. protocol has been registered in an international database, Prospective Register Systematic Reviews (PROSPERO) with reference number: CRD42023438277. Results total 794 studies worldwide their eligibility. Of these 11 2845 participants systematic review meta-analysis. overall world found be 32.2% (95%CI = 27.70–41.73%), 97.3%, 0.001). Conclusion high. virus remains global burden because its genetic causes constantly changing or it mutated throughout pandemic emerge new strain infection. interventions such as massive vaccination, early case detection, screening, isolation, treatment cases need implemented tackle severity.

Language: Английский

Citations

15

Ferroptosis: a novel mechanism of cell death in ophthalmic conditions DOI Creative Commons
Yaqi Yang,

Yumeng Lin,

Zhongyu Han

et al.

Frontiers in Immunology, Journal Year: 2024, Volume and Issue: 15

Published: June 27, 2024

Ferroptosis, a new type of programmed cell death proposed in recent years, is characterized mainly by reactive oxygen species and iron-mediated lipid peroxidation differs from death, such as apoptosis, necrosis, autophagy. Ferroptosis associated with variety physiological pathophysiological processes. Recent studies have shown that ferroptosis can aggravate or reduce the occurrence development diseases targeting metabolic pathways signaling tumors, ischemic organ damage, other degenerative related to peroxidation. Increasing evidence suggests closely linked onset progression various ophthalmic conditions, including corneal injury, glaucoma, age-related macular degeneration, diabetic retinopathy, retinal detachment, retinoblastoma. Our review current research on reveals significant advancements our understanding pathogenesis, aetiology, treatment these conditions.

Language: Английский

Citations

5

COVID-19 Biogenesis and Intracellular Transport DOI Open Access
Alexander A. Mirоnоv, M.A. Savin, Galina V. Beznoussenko

et al.

International Journal of Molecular Sciences, Journal Year: 2023, Volume and Issue: 24(5), P. 4523 - 4523

Published: Feb. 24, 2023

SARS-CoV-2 is responsible for the COVID-19 pandemic. The structure of and most its proteins have been deciphered. enters cells through endocytic pathway perforates endosomes’ membranes, (+) RNA appears in cytosol. Then, starts to use protein machines host their membranes biogenesis. generates a replication organelle reticulo-vesicular network zippered endoplasmic reticulum double membrane vesicles. viral start oligomerize are subjected budding within ER exit sites, virions passed Golgi complex, where glycosylation appear post-Golgi carriers. After fusion with plasma membrane, glycosylated secreted into lumen airways or (seemingly rarely) space between epithelial cells. This review focuses on biology SARS-CoV-2’s interactions transport Our analysis revealed significant number unclear points related intracellular SARS-CoV-2-infected

Language: Английский

Citations

12