Recapping the Features of SARS-CoV-2 and Its Main Variants: Status and Future Paths DOI Open Access
Miguel Á. Ortega, Cielo García‐Montero, Oscar Fraile‐Martínez

et al.

Journal of Personalized Medicine, Journal Year: 2022, Volume and Issue: 12(6), P. 995 - 995

Published: June 18, 2022

Over the two years that we have been experiencing Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) pandemic, our challenges race to develop vaccines and difficulties in fighting against new variants due rapid ability of virus evolve. In this sense, different organizations identified classified emerging, distinguishing between concern (VOC), interest (VOI), or under monitoring (VUM). The following review aims describe latest updates focusing on VOC already de-escalated variants, as well impact these had global situation. Understanding intrinsic properties SARS-CoV-2 its interaction with immune system vaccination is essential make out underlying mechanisms led appearance helping determine next steps for better public management pandemic.

Language: Английский

COVID-19 and its long-term sequelae: what do we know in 2023? DOI Open Access
Giuseppe Lippi, Fabián Sanchís-Gomar, Brandon Michael Henry

et al.

Polskie Archiwum Medycyny Wewnętrznej, Journal Year: 2023, Volume and Issue: unknown

Published: Jan. 9, 2023

Post‑viral syndrome is a well‑known medical condition characterized by different levels of physical, cognitive, and emotional impairment that may persist with fluctuating severity after recovering from an acute viral infection. Unsurprisingly, COVID‑19 also be accompanied medium- long‑term clinical sequelae SARS‑CoV‑2 Although many definitions have been provided, "long‑COVID" can defined as occurring in patients history infection, developing 3 months the symptoms onset, persisting for at least 2 months, not explained alternative diagnoses. According to recent global analyses, cumulative prevalence long‑COVID seems range between 9% 63%, up 6‑fold higher than similar postviral infection conditions. Long‑COVID primarily encompasses presence 1 symptom, such fatigue, dyspnea, cognitive / brain fog, postexertional malaise, memory issues, musculoskeletal pain spasms, cough, sleep disturbances, tachycardia palpitations, altered smell taste perception, headache, chest pain, depression. The most important demographic predictors date are female sex, older age, cigarette smoking, pre‑existing conditions, lack vaccination, pre‑Omicron variants, number phase symptoms, load, severe critical illness, well invasive mechanical ventilation. Concerning care patients, greatest challenge fact this cannot considered single entity, thus it needs integrated multidisciplinary management, specifically tailored type symptoms.

Language: Английский

Citations

138

Post-recovery COVID-19 and incident heart failure in the National COVID Cohort Collaborative (N3C) study DOI Creative Commons
Husam M. Salah, Marat Fudim, Shawn T. O’Neil

et al.

Nature Communications, Journal Year: 2022, Volume and Issue: 13(1)

Published: July 15, 2022

Cardiac involvement has been noted in COVID-19 infection. However, the relationship between post-recovery and development of de novo heart failure not investigated a large, nationally representative population. We examined outcomes 587,330 patients hospitalized United States (257,075 with 330,255 without), using data from National COVID Cohort Collaborative study. Patients were older (51 vs. 46 years), more often male (49% 42%), less White (61% 69%). Over median follow up 367 days, 10,979 incident events occurred. After adjustments, hospitalization was associated 45% higher hazard (hazard ratio = 1.45; 95% confidence interval: 1.39-1.51), pronounced associations among who younger (P-interaction 0.003), 0.005), or had established cardiovascular disease 0.005). In conclusion, is increased risk failure.

Language: Английский

Citations

34

Analysis of online search trends suggests that SARS-CoV-2 Omicron (B.1.1.529) variant causes different symptoms DOI Open Access
Giuseppe Lippi, Riccardo Nocini, Brandon Michael Henry

et al.

Journal of Infection, Journal Year: 2022, Volume and Issue: 84(5), P. e76 - e77

Published: Feb. 17, 2022

Language: Английский

Citations

30

Arterial Thrombotic Events in Hospitalized COVID-19 Patients: A Short Review and Meta-Analysis DOI Open Access
Matteo Candeloro, Sam Schulman

Seminars in Thrombosis and Hemostasis, Journal Year: 2022, Volume and Issue: 49(01), P. 047 - 054

Published: July 6, 2022

Abstract It is well established that the risk of venous thromboembolism high in coronavirus disease 19 (COVID-19). The frequency arterial thromboembolic events (ATEs) hospitalized patients with COVID-19 unclear, as magnitude these comparison other infections. We searched MEDLINE from February 2020 to 2022 for prospective or retrospective cohort studies and randomized clinical trials reported number acute myocardial infarction (AMI), ischemic stroke (AIS), limb ischemia (ALI), ATE defined by original authors COVID-19. pooled frequencies were calculated through meta-analysis using random effects model logit transformation presented relative 95% prediction intervals (95% PI). retrieved a total 4,547 studies, 36 which (28 cohorts, five cohorts three trials) finally included our analysis. resulting counted 100,949 patients, 2,641 (2.6%) whom experienced ATE. was 2.0% PI, 0.4–9.6%). AMI, AIS, ALI, 0.8% 0.1–8.1%), 0.9% 0.3–2.9%), 0.2% 0.0–4.2%), 0.5% 0.1–3.0%), respectively. In incidence on non-COVID viral pneumonia, we did not detect significant difference results conclusion, found non-negligible proportion Our are similar those influenza pneumonia.

Language: Английский

Citations

28

SARS-CoV-2 Breakthrough Infections: Incidence and Risk Factors in a Large European Multicentric Cohort of Health Workers DOI Creative Commons
Stefano Porru, Maria Grazia Lourdes Monaco, Gianluca Spiteri

et al.

Vaccines, Journal Year: 2022, Volume and Issue: 10(8), P. 1193 - 1193

Published: July 27, 2022

The research aimed to investigate the incidence of SARS-CoV-2 breakthrough infections and their determinants in a large European cohort more than 60,000 health workers.A multicentric retrospective study, involving 12 centers, was carried out within ORCHESTRA project, collecting data up 18 November 2021 on fully vaccinated workers. cumulative investigated with its association occupational social-demographic characteristics (age, sex, job title, previous infection, antibody titer levels, time from vaccination course completion).Among 64,172 workers 797 were observed (cumulative 1.2%). primary analysis using individual 8 centers showed that age infection significantly modified rates. In meta-analysis aggregated all standardized inversely related risk (p = 0.008 p 0.007, respectively).The inverse correlation supports evidence plays role prevention, especially Cellular immunity, clinical conditions, timing should be further investigated.

Language: Английский

Citations

27

Antigenicity comparison of SARS‐CoV‐2 Omicron sublineages with other variants contained multiple mutations in RBD DOI
Qianqian Li, Mingjie Zhang,

Ziteng Liang

et al.

MedComm, Journal Year: 2022, Volume and Issue: 3(2)

Published: April 9, 2022

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants, particularly those with multiple mutations in receptor-binding domain (RBD), pose a critical challenge to the efficacy of disease 2019 (COVID-19) vaccines and therapeutic neutralizing monoclonal antibodies (mAbs). Omicron sublineages BA.1, BA.2, BA.3, as well recent emergence C.1.2, B.1.630, B.1.640.1, B.1.640.2, have RBD may lead antibody evasion. It is urgent evaluate antigenic change above seven variants against mAbs sera from guinea pigs immunized concern (VOCs) (Alpha, Beta, Gamma, Delta, Omicron) interest (VOIs) (Lambda, Mu) immunogens. Only out 24 showed no reduction activity BA.3. However, among these mAbs, neutralization XGv337 XGv338 B.1.640.2 were decreased. Therefore, only five significant variants. Using VOCs VOIs immunogens, we found that antigenicity could be divided into three clusters, each cluster similar different Among them, D614G, B.1.630 formed cluster, C.1.2 BA.3 cluster.

Language: Английский

Citations

26

Evolution of SARS-CoV-2 in Spain during the First Two Years of the Pandemic: Circulating Variants, Amino Acid Conservation, and Genetic Variability in Structural, Non-Structural, and Accessory Proteins DOI Open Access
Paloma Troyano-Hernáez,

Roberto Reinosa,

África Holguín

et al.

International Journal of Molecular Sciences, Journal Year: 2022, Volume and Issue: 23(12), P. 6394 - 6394

Published: June 7, 2022

Monitoring SARS-CoV-2’s genetic diversity and emerging mutations in this ongoing pandemic is crucial to understanding its evolution ensuring the performance of COVID-19 diagnostic tests, vaccines, therapies. Spain has been one main epicenters COVID-19, reaching highest number cases deaths per 100,000 population Europe at beginning pandemic. This study aims investigate epidemiology SARS-CoV-2 18 Autonomous Communities across six epidemic waves established from February 2020 January 2022. We report on circulating variants each wave Spanish region analyze mutation frequency, amino acid (aa) conservation, most frequent aa changes structural/non-structural/accessory viral protein among sequences deposited GISAID database during period. The overall frequency was 1.24 × 10−5. conservation >99% three types protein, being non-structural conserved. Accessory proteins had more variable positions, while structural presented sequence. Six lineages spread successfully data provide an insight into circulation variability first two years

Language: Английский

Citations

25

In silico evaluation of the impact of Omicron variant of concern sublineage BA.4 and BA.5 on the sensitivity of RT‐qPCR assays for SARS‐CoV‐2 detection using whole genome sequencing DOI
Divya Sharma, Kin Israel Notarte, Rey Arturo T. Fernandez

et al.

Journal of Medical Virology, Journal Year: 2022, Volume and Issue: 95(1)

Published: Oct. 20, 2022

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant of concern (VoC) Omicron (B.1.1.529) has rapidly spread around the world, presenting a new threat to global public human health. Due large number mutations accumulated by SARS-CoV-2 Omicron, concerns have emerged over potentially reduced diagnostic accuracy reverse-transcription polymerase chain reaction (RT-qPCR), gold standard test for diagnosing disease 2019 (COVID-19). Thus, we aimed assess impact currently endemic sublineages BA.4 and BA.5 on integrity sensitivity RT-qPCR assays used (COVID-19) diagnosis via in silico analysis. We employed whole genome sequencing data evaluated potential false negatives or failure due mismatches between primers/probes VoC viral genome.In 12 tests (containing 30 primers probe sets) developed detection reported World Health Organization (WHO) available literature, was assessed specifically detecting sublineages, obtained after removing redundancy from publicly genomes National Center Biotechnology Information (NCBI) Global Initiative Sharing Avian Influenza Data (GISAID) databases. Mismatches amplicon regions sets were evaluated, clustering analysis corresponding sequences carried out.From 1164 representative sublineage analyzed, substitution first five nucleotides (C T) amplicon's 3'-end observed all samples resulting 0% HKUnivRdRp/Hel (mismatch reverse primer) CoremCharite N both forward primers). mismatch primer's 5'-end (3-nucleotide substitution, GGG AAC), ChinaCDC assay at 0.69%. The 10 nucleotide primer resulted 0.09% Thai assay. Of 1926 genomes, also had sensitivity. A 3.06% because AAC). Similarly, primer, assay's low 0.21% BA.5. Further, eight retained high (more than 97%) 9 more 99% sensitivity.We four (HKUnivRdRp/Hel, N, N) that could result negative results VoCs sublineages. Interestingly, Voc but 99.53% In addition, 66.67% 75% additional along with be modification development

Language: Английский

Citations

24

Deciphering the role of monocyte and monocyte distribution width (MDW) in COVID-19: an updated systematic review and meta-analysis DOI Open Access
Daniela Ligi, Bruna Lo Sasso, Brandon Michael Henry

et al.

Clinical Chemistry and Laboratory Medicine (CCLM), Journal Year: 2023, Volume and Issue: 61(6), P. 960 - 973

Published: Jan. 10, 2023

The SARS-CoV-2 infection is characterized by both systemic and organ hyper-thromboinflammation, with a clinical course ranging from mild up-to critical dysfunction death. In patients coronavirus disease 2019 (COVID-19) the monocyte/macrophage population deeply involved as trigger target, assuming value of useful diagnostic/prognostic marker innate cellular immunity. Several studies correlated morphological immunophenotypic alterations circulating monocytes outcomes in COVID-19 patients, concluding that monocyte distribution width (MDW) may retain stratifying risk worsening. Through an electronic search Medline Scopus we performed updated literature review meta-analysis aimed to explore association between increased MDW levels illness severity deciphering role(s) function(s) harmful network underlining infection. We found significantly elevated values were frequently present who developed unfavorable outcomes, compounded significant anisocytosis outcomes. These findings suggest blood index its scatter plot could represent routine laboratory tools for early identification at higher monitoring progression viral infection, therapeutic efficacy throughout hospitalization. According this evidence, decisions benefit value, administration drugs limiting thrombo-inflammation due hyper-activation severe/critical disease.

Language: Английский

Citations

15

COVID-19 vaccination and SARS-CoV-2 Omicron (B.1.1.529) variant: a light at the end of the tunnel? DOI Creative Commons
Camilla Mattiuzzi, Brandon Michael Henry, Giuseppe Lippi

et al.

International Journal of Infectious Diseases, Journal Year: 2022, Volume and Issue: 118, P. 167 - 168

Published: March 9, 2022

Language: Английский

Citations

21