The Three-Dimensional Structure of the Genome of the Dark Septate Endophyte Exophiala tremulae and Its Symbiosis Effect on Alpine Meadow Plant Growth DOI Creative Commons
Chu Wu, Junjie Fan, Die Hu

et al.

Journal of Fungi, Journal Year: 2025, Volume and Issue: 11(4), P. 246 - 246

Published: March 24, 2025

The establishment of artificial grassland is a good pathway for resolving serious social and economic problems in the Qinghai–Tibet Plateau. Some beneficial indigenous microbes may be used to improve productivity grassland. genome dark septate fungus, Exophiala tremulae CICC2537, was sequenced assembled at chromosome level using PacBio sequencing platform, with assistance Hi-C technique scaffolding, its 3D structures were investigated. size E. 51.903848 Mb, it contains eight chromosomes. A total 12,277 protein-coding genes predicted, 11,932 (97.19%) annotated. As distribution exon intron number gene GC CDS GC, showed similar patterns other investigated members genus Exophiala. analysis carbohydrate-active enzymes that possesses greatest auxiliary activities lowest carbohydrate-binding modules among fungi. candidate effector proteins 3337, out which cytoplasmic apoplastic made up 3100 163, respectively. whole contained 40 compartment 76 Bs, there no significant difference content Bs. predicted contain 155 topologically associating domains (TADs), their average length 250,000 bp, but differences numbers per bin localized within boundaries interiors TADs. Comparative diverged from mesophila about 34.1 (30.0–39.1) Myr ago, calicioides 85.6 (76.1–90.6) ago. Compared all fungi, contraction expansion families 13 89, respectively, 14 670, Our work provides basis use fungus alpine further research into symbiosis mechanisms, growth plant species

Language: Английский

Fungal Planet description sheets: 1478–1549 DOI Creative Commons
P.W. Crous,

E R Osieck,

Roger G. Shivas

et al.

Persoonia - Molecular Phylogeny and Evolution of Fungi, Journal Year: 2023, Volume and Issue: 50(1), P. 158 - 310

Published: June 30, 2023

Novel species of fungi described in this study include those from various countries as follows: Australia , Aschersonia mackerrasiae on whitefly, Cladosporium corticola bark Melaleuca quinquenervia Penicillium nudgee soil under Pseudocercospora blackwoodiae leaf spot Persoonia falcata and dalyelliae Senna alata . Bolivia Aspicilia lutzoniana fully submersed siliceous schist high-mountain streams, Niesslia parviseta the lower part apothecial discs Erioderma barbellatum onatwig. Brazil Cyathus bonsai decaying wood, Geastrum albofibrosum moist with litter, Laetiporus pratigiensis a trunk living unknown hardwood tree species, Scytalidium synnematicum dead twigs unidentified plant. Bulgaria Amanita abscondita sandy plantation Quercus suber Canada acericola Acer saccharum China Colletotrichum qingyuanense fruit lesion Capsicum annuum Denmark Helminthosphaeria leptospora corticioid Neohypochnicium cremicolor. Ecuador (Galapagos) Phaeosphaeria scalesiae Scalesia sp. Finland Inocybe jacobssonii calcareouss oils dry forests park habitats. France Cortinarius rufomyrrheus Pinus pinaster Periconia neominutissima leaves Poaceae India Coprinopsis fragilis logs, Filoboletus keralensis woody substrate, sankaranii soil, Physisporinus tamilnaduensis Azadirachta indica Poronia nagaraholensis elephant dung. Iran Neosetophoma fic infected Ficus elastica Israel Cnidariophoma eilatica (incl. gen. nov.) Stylophora pistillata Italy Lyophyllum obscurum acidic soil. Namibia Aureobasidium faidherbiae Faidherbia albida welwitschiae Welwitschia mirabilis Netherlands Gaeumannomycella caricigena culms Carex elongata Houtenomyces caricicola disticha Neodacampia ulmea branch Ulmus laevis phragmiticola standing Phragmites australis Pseudopyricularia Rhodoveronaea nieuwwulvenica bamboo sticks. Norway Arrhenia similis half-buried moss-covered pieces rotting wood grass-grownpath. Pakistan Mallocybe ahmadii Poland Beskidomyces laricis resin Larix decidua ssp. polonica Lapidomyces epipinicola sooty mould community nigra Leptographium granulatum gallery Dendroctonus micans Picea abies Portugal Geoglossum azoricum mossy areas laurel forest planted Cryptomeria japonica Lunasporangiospora lusitanica biofilm covering bio deteriorated limestone wall. Qatar Alternaria halotolerans hypersaline sea water, qatarensis water sample collected lagoon. South Africa Alfaria thamnochorti culm Thamnochortus fraternus Knufia aloeicola Aloe gariepensis Muriseptatomyces restionacearum Restionaceae Neocladosporium arctotis nest cases bagworm moths( Lepidoptera, Psychidae ) Arctotis auriculata Neodevriesia scadoxi Scadoxus puniceus Paraloratospora schoenoplecti stems Schoenoplectus lacustris Tulasnella epidendrea roots Epidendrum × obrienianum Xenoidriella cinnamomi Cinnamomum camphora Korea Lemonniera fraxinea Fraxinus frompond. Spain Atheniella lauri fallen trees Laurus nobilis Halocryptovalsa endophytica surface-sterilised, asymptomatic Salicornia patula amygdaliolens mixed forest, pityusarum calcareous roseobulbipes soils, Neonectria borealis Vitis berlandieri rupestris Sympoventuria eucalyptorum Eucalyptus sp., Tuber conchae fromsoil. Sweden bidumensis Thailand Cordyceps sandindaengensis Lepidoptera pupa, buried Ophiocordyceps kuchinaraiensis Coleoptera larva, Samsoniella winandae buriedinsoil. Taiwan region (China) Neophaeosphaeria livistonae Livistona rotundifolia Türkiye Melanogaster anatolicus clay loamy soils. UK Basingstokeomyces allii Allium schoenoprasum Ukraine Xenosphaeropsis corni recently stem Cornus alba. USA Nothotrichosporon aquaticum philadelphiana swab coil surface. Morphological culture characteristics for these new taxa are supported by DNA barcodes.

Language: Английский

Citations

61

Phytophthora: taxonomic and phylogenetic revision of the genus DOI Creative Commons
Z. Gloria Abad, Treena I. Burgess, Tyler B. Bourret

et al.

Studies in Mycology, Journal Year: 2023, Volume and Issue: 106(1), P. 259 - 348

Published: Oct. 7, 2023

Many members of the

Language: Английский

Citations

51

Freshwater fungi from karst landscapes in China and Thailand DOI
Jing Yang, Lingling Liu, E.B. Gareth Jones

et al.

Fungal Diversity, Journal Year: 2023, Volume and Issue: 119(1), P. 1 - 212

Published: March 1, 2023

Language: Английский

Citations

49

Fungal diversity notes 1717–1817: taxonomic and phylogenetic contributions on genera and species of fungal taxa DOI
Shi‐Liang Liu, Xuewei Wang, Guojie Li

et al.

Fungal Diversity, Journal Year: 2024, Volume and Issue: 124(1), P. 1 - 216

Published: Feb. 15, 2024

Language: Английский

Citations

39

A review of recently introduced Aspergillus, Penicillium, Talaromyces and other Eurotiales species DOI Creative Commons
Cobus M. Visagie, Neriman Yılmaz, Sándor Kocsubé́

et al.

Studies in Mycology, Journal Year: 2024, Volume and Issue: 107(1), P. 1 - 66

Published: Jan. 11, 2024

The order Eurotiales is diverse and includes species that impact our daily lives in many ways. In the past, its taxonomy was difficult due to morphological similarities, which made accurate identification of difficult. This situation improved stabilised with recent taxonomic nomenclatural revisions modernised Aspergillus , Penicillium Talaromyces . mainly availability curated accepted lists publication comprehensive DNA sequence reference datasets. has also led a sharp increase number new described each year turn needing regular updates. focus this study review 160 between last list published 2020 until 31 December 2022. To these species, single-gene phylogenies were constructed GCPSR (Genealogical Concordance Phylogenetic Species Recognition) applied. Multi-gene phylogenetic analyses performed further determine relationships newly introduced species. As result, we 133 (37 two Paecilomyces 59 Rasamsonia 32 one Xerochrysium ), synonymised 22, classified four as doubtful created combination for Paraxerochrysium coryli brings 453 12 535 14 fr 203 We accept section Tenues (in series Hainanici sect. Cavernicolarum ) Vascosobrinhoana Citrina ). addition, validate invalidly annui A. saccharicola Annuorum Flavi introduce Dichlaena lentisci (type genus) place it subgenus Circumdati provide an updated description oblata excluded recently previously accepted. represents important update

Language: Английский

Citations

23

What are the 100 most cited fungal genera? DOI

C.S. Bhunjun,

Yijun Chen, Chayanard Phukhamsakda

et al.

Studies in Mycology, Journal Year: 2024, Volume and Issue: unknown

Published: Jan. 1, 2024

Language: Английский

Citations

23

Phaeoisaria laianensis (Pleurotheciales, Pleurotheciaceae), a new species from freshwater habitats in China DOI Creative Commons
Yu Liu,

Guiping Xu,

Xin-Yi Yan

et al.

Biodiversity Data Journal, Journal Year: 2022, Volume and Issue: 10

Published: Oct. 27, 2022

Freshwater fungi play an indispensable role in the ecosystem and have great research value. Based on morphological phylogenetic analyses of a concatenated dataset ITS, LSU SSU sequences, new species, Phaeoisarialaianensis, was introduced as freshwater hyphomycete from Anhui Province, China.Phaeoisarialaianensis morphologically described erect, rigid, dark brown to black, velvety synnemata which has macronematous, septate, branched, brown, parallel adpressed conidiophores with polyblastic, integrated, terminal, hyaline pale smooth, denticulate, sympodial conidiogenous cells ellipsoidal obovoid, rounded at apex, obtuse tapering towards base, guttulate conidia. molecular characteristics, it is confirmed be species. All illustrations descriptions been provided.

Language: Английский

Citations

55

Ten decadal advances in fungal biology leading towards human well-being DOI Creative Commons
Ausana Mapook,

K. D. Hyde,

Khadija Hassan

et al.

Fungal Diversity, Journal Year: 2022, Volume and Issue: 116(1), P. 547 - 614

Published: Sept. 1, 2022

Fungi are an understudied resource possessing huge potential for developing products that can greatly improve human well-being. In the current paper, we highlight some important discoveries and developments in applied mycology interdisciplinary Life Science research. These examples concern recently introduced drugs treatment of infections neurological diseases; application -OMICS techniques genetic tools medical regulation mycotoxin production; as well highlights mushroom cultivaton Asia. Examples new diagnostic exploitation candidates therapeutic drugs, also given. addition, two entries illustrating latest use fungi biodegradation fungal biomaterial production provided. Some other areas where there have been and/or will be significant included. It is our hope this paper help realise importance a industrial see next decades bring forward many fungus-derived products.

Language: Английский

Citations

51

Additions to hyphomycetes from Yungui Plateau, China with three new species (Ascomycota, Sordariomycetes) DOI Creative Commons

Long Chun-Sheng,

Wu You-Peng,

Xu Zhang

et al.

Biodiversity Data Journal, Journal Year: 2023, Volume and Issue: 11

Published: May 15, 2023

Yungui Plateau is rich in fungal diversity. Hyphomycetes, growing on submerged wood, can promote the degradation of organisms and reuse rotten wood energy. During an investigation hyphomycetes this region, 19 species dematiaceous were collected Plateau. Both morphological identification multi-gene phylogenetic analyses ITS, tef 1 LSU sequences supported Coryneum sevenseptatis as a new species. Phaeoisaria guizhouensis Pleurothecium yunanensis introduced, based morphology. Morphological descriptions illustrations detailed. Known are listed with notes.

Language: Английский

Citations

40

Fungal Planet description sheets: 1550–1613 DOI Creative Commons
P.W. Crous,

M.M. Costa,

Hazal Kandemir

et al.

Persoonia - Molecular Phylogeny and Evolution of Fungi, Journal Year: 2023, Volume and Issue: 51(1), P. 280 - 417

Published: Dec. 31, 2023

Novel species of fungi described in this study include those from various countries as follows: Argentina , Neocamarosporium halophilum leaf spots Atriplex undulata . Australia Aschersonia merianiae on scale insect ( Coccoidea ), Curvularia huamulaniae isolated air, Hevansia mainiae dead spider, Ophiocordyceps poecilometigena Poecilometis sp. Bolivia Lecanora menthoides sandstone, open semi-desert montane areas, Sticta monlueckiorum corticolous a forest, Trichonectria epimegalosporae apothecia Mega-lospora sulphurata var. puncteliae the thallus Punctelia borreri Brazil Catenomargarita pseudocercosporicola (incl. gen. nov.) hyperparasitic Pseudocercospora fijiensis leaves Musa acuminata Tulasnella restingae protocorms and roots Epidendrum fulgens Bulgaria Anthracoidea umbrosae Carex spp. Croatia Hymenoscyphus radicis surface-sterilised, asymptomatic Microthlaspi erraticum Orbilia multiserpentina wood decorticated branches Quercus pubescens France Calosporella punctatispora corticated twigs Acer opalus French West Indies (Martinique) Eutypella lechatii corticatedpalmstem. Germany Arrhenia alcalinophila onloamysoil. Iceland Cistella blauvikensis grass Poaceae ). India Fulvifomes maritimus living Peltophorum pterocarpum natarajanii Prosopis juliflora subazonatus trunk Azadirachta indica Macrolepiota bharadwajii moist soil near Narcissea delicata decaying elephant dung, Paramyrothecium indicum Hibiscus hispidissimus Trichoglossum syamviswanathii onmoistsoilnearthebaseofabambooplantation. Iran Vacuiphoma astragalicola stem canker Astragalus sarcocolla Malaysia Neoeriomycopsis fissistigmae Neoeriomycopsidaceae fam. spotso n flower Fissistigma Namibia Exophiala lichenicola lichenicolous Acarospora cf. luederitzensis Netherlands Entoloma occultatum soil, Extremus caricis sp., Inocybe pseudomytiliodora Norway guldeniae calcareous rupestroides gravelly soil. Pakistan Hymenagaricus brunneodiscus Philippines philippinensis parasitic Asilus Poland Hawksworthiomyces ciconiae Ciconia ciconia nest, Plectosphaerella vigrensis Impatiens noli-tangere, Xenoramularia epitaxicola sooty mould community Taxus baccata. Portugal dagamae onclaysoil. Saudi Arabia Diaporthe jazanensis Coffea arabica. South Africa Alternaria moraeae Moraea Bonitomyces buffelskloofinus gen.nov.) deadt wigs unknown tree, Constrictochalara koukolii Itea rhamnoides colonised by Meliola Cylindromonium lichenophilum Parmelina tiliacea, Gamszarella buffelskloofina insect, Isthmosporiella africana Nothoeucasphaeria gen.nov.), Nothomicrothyrium beaucarneae Beaucarnea stricta Paramycosphaerella proteae Protea caffra, Querciphoma foliicola litter, Rachicladosporium conostomii Conostomium natalense glabrum Rhamphoriopsis synnematosa twig Waltergamsia mpumalanga tree. Spain Amanita fulvogrisea limestone mixed herculis Vuilleminia beltraniae Cistus symphytifolius Sweden Pachyella pulchella sand-silt river bank. Thailand Deniquelata cassiae Cassia fistula Stomiopeltis thailandica Magnolia champaca. Ukraine Circinaria podoliana natural outcrops, Neonematogonum carpinicola Carpinus betulus. USA wilsonii water cooling tower, Hygrophorus aesculeticola Neocelosporium aereum air house attic. Morphological culture characteristics are supported DNA barcodes.

Language: Английский

Citations

33