Nature Methods,
Journal Year:
2022,
Volume and Issue:
20(2), P. 295 - 303
Published: Dec. 30, 2022
Abstract
We
present
an
auxiliary
learning
task
for
the
problem
of
neuron
segmentation
in
electron
microscopy
volumes.
The
consists
prediction
local
shape
descriptors
(LSDs),
which
we
combine
with
conventional
voxel-wise
direct
neighbor
affinities
boundary
detection.
capture
statistics
about
to
be
segmented,
such
as
diameter,
elongation,
and
direction.
On
a
study
comparing
several
existing
methods
across
various
specimen,
imaging
techniques,
resolutions,
LSDs
consistently
increases
accuracy
affinity-based
over
range
metrics.
Furthermore,
addition
promotes
on
par
current
state
art
(flood-filling
networks),
while
being
two
orders
magnitudes
more
efficient—a
critical
requirement
processing
future
petabyte-sized
datasets.
Many
insects
use
patterns
of
polarized
light
in
the
sky
to
orient
and
navigate.
Here,
we
functionally
characterize
neural
circuitry
fruit
fly,
Drosophila
melanogaster
,
that
conveys
signals
from
eye
central
complex,
a
brain
region
essential
for
fly’s
sense
direction.
Neurons
tuned
angle
polarization
ultraviolet
are
found
throughout
anterior
visual
pathway,
connecting
optic
lobes
with
complex
via
tubercle
bulb,
homologous
organization
‘sky
compass’
pathways
described
other
insects.
We
detail
how
consistent,
map-like
tunings
peripheral
system
is
transformed
into
reduced
representation
suited
flexible
processing
brain.
This
study
identifies
computational
motifs
transformation,
enabling
mechanistic
comparisons
multisensory
integration
navigation
brains
Sustained
changes
in
mood
or
action
require
persistent
neural
activity,
but
it
has
been
difficult
to
identify
the
circuit
mechanisms
that
underlie
activity
and
contribute
long-lasting
behavior.
Here,
we
show
a
subset
of
Doublesex+
pC1
neurons
Drosophila
female
brain,
called
pC1d/e,
can
drive
minutes-long
behavior
presence
males.
Using
automated
reconstruction
volume
electron
microscopic
(EM)
image
map
all
inputs
outputs
both
pC1d
pC1e.
This
reveals
strong
recurrent
connectivity
between,
particular,
pC1d/e
specific
Fruitless+
aIPg.
We
additionally
find
activation
drives
brain
areas
cells
overlapping
with
network,
including
neurons.
Our
work
thus
links
architecture
brain.
Insects
have
evolved
diverse
and
remarkable
strategies
for
navigating
in
various
ecologies
all
over
the
world.
Regardless
of
species,
insects
share
presence
a
group
morphologically
conserved
neuropils
known
collectively
as
central
complex
(CX).
The
CX
is
navigational
center,
involved
sensory
integration
coordinated
motor
activity.
Despite
fact
that
our
understanding
behavior
comes
predominantly
from
ants
bees,
most
what
we
know
about
underlying
neural
circuitry
such
work
fruit
flies.
Here,
aim
to
close
this
gap,
by
providing
first
comprehensive
map
major
columnar
neurons
their
projection
patterns
bee.
We
find
numerous
components
circuit
appear
be
highly
between
fly
bee,
but
also
highlight
several
key
differences
which
are
likely
important
functional
ramifications.
Annual Review of Neuroscience,
Journal Year:
2022,
Volume and Issue:
45(1), P. 533 - 560
Published: July 8, 2022
The
neocortex
is
a
complex
neurobiological
system
with
many
interacting
regions.
How
these
regions
work
together
to
subserve
flexible
behavior
and
cognition
has
become
increasingly
amenable
rigorous
research.
Here,
I
review
recent
experimental
theoretical
on
the
modus
operandi
of
multiregional
cortex.
These
studies
revealed
several
general
principles
for
neocortical
interareal
connectivity,
low-dimensional
macroscopic
gradients
biological
properties
across
cortical
areas,
hierarchy
timescales
information
processing.
Theoretical
suggests
testable
predictions
regarding
differential
excitation
inhibition
along
feedforward
feedback
pathways
in
hierarchy.
Furthermore,
modeling
distributed
working
memory
simple
decision-making
given
rise
novel
mathematical
concept,
dubbed
bifurcation
space,
that
potentially
explains
how
different
canonical
circuit
organization
but
heterogeneities,
are
able
their
respective
(e.g.,
sensory
coding
versus
executive
control)
functions
modularly
organized
brain.
Nature,
Journal Year:
2022,
Volume and Issue:
612(7939), P. 316 - 322
Published: Nov. 30, 2022
Abstract
In
neural
networks
that
store
information
in
their
connection
weights,
there
is
a
tradeoff
between
sensitivity
and
stability
1,2
.
Connections
must
be
plastic
to
incorporate
new
information,
but
if
they
are
too
plastic,
stored
can
corrupted.
A
potential
solution
allow
plasticity
only
during
epochs
when
task-specific
rich,
on
the
basis
of
‘when-to-learn’
signal
3
We
reasoned
dopamine
provides
when-to-learn
allows
brain’s
spatial
maps
update
available—that
is,
an
animal
moving.
Here
we
show
neurons
innervating
Drosophila
head
direction
network
specifically
active
fly
turns
change
its
direction.
Moreover,
activity
scales
with
moment-to-moment
fluctuations
rotational
speed.
Pairing
release
visual
cue
persistently
strengthens
cue’s
influence
cells.
Conversely,
inhibiting
these
decreases
cue.
This
mechanism
should
accelerate
learning
moments
orienting
movements
providing
rich
stream
allowing
rates
low
at
other
times
protect
information.
Our
results
how
brain
compressed
into
discrete
which
high
matched
intake.
Genetics,
Journal Year:
2023,
Volume and Issue:
224(2)
Published: May 2, 2023
Abstract
Originally
a
genetic
model
organism,
the
experimental
use
of
Drosophila
melanogaster
has
grown
to
include
quantitative
behavioral
analyses,
sophisticated
perturbations
neuronal
function,
and
detailed
sensory
physiology.
A
highlight
these
developments
can
be
seen
in
context
vision,
where
pioneering
studies
have
uncovered
fundamental
generalizable
principles
processing.
Here
we
begin
with
an
overview
vision-guided
behaviors
common
methods
for
probing
visual
circuits.
We
then
outline
anatomy
physiology
brain
regions
involved
processing,
beginning
at
periphery
ending
descending
motor
control.
Areas
focus
contrast
motion
detection
optic
lobe,
circuits
feature
selectivity,
computations
support
spatial
navigation,
contextual
associative
learning.
Finally,
look
future
fly
neuroscience
discuss
promising
topics
further
study.
Current Biology,
Journal Year:
2024,
Volume and Issue:
34(3), P. 473 - 488.e6
Published: Jan. 4, 2024
Complex
behaviors
depend
on
the
precise
developmental
specification
of
neuronal
circuits,
but
relationship
between
genetic
programs
for
neural
development,
circuit
structure,
and
behavioral
output
is
often
unclear.
The
central
complex
(CX)
a
conserved
sensory-motor
integration
center
in
insects,
which
governs
many
higher-order
largely
derives
from
small
number
type
II
stem
cells
(NSCs).
Here,
we
show
that
Imp,
IGF-II
mRNA-binding
protein
expressed
NSCs,
plays
role
specifying
essential
components
CX
olfactory
navigation
circuitry.
We
following:
(1)
multiple
circuitry
arise
NSCs.
(2)
Manipulating
Imp
expression
NSCs
alters
morphology
these
elements,
with
most
potent
effects
neurons
targeting
ventral
layers
fan-shaped
body
(FB).
(3)
regulates
Tachykinin-expressing
FB
input
neurons.
(4)
required
establishing
proper
neuropil
structures.
(5)
Loss
abolishes
upwind
orientation
to
attractive
odor
while
leaving
locomotion
odor-evoked
regulation
movement
intact.
Taken
together,
our
findings
establish
temporally
gene
can
regulate
behavior
by
developmentally
regulating
provides
first
step
toward
dissection
its
roles
behavior.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Jan. 10, 2024
Abstract
Techniques
that
enable
precise
manipulations
of
subsets
neurons
in
the
fly
central
nervous
system
have
greatly
facilitated
our
understanding
neural
basis
behavior.
Split-GAL4
driver
lines
allow
specific
targeting
cell
types
Drosophila
melanogaster
and
other
species.
We
describe
here
a
collection
3060
range
adult
1373
characterized
third-instar
larvae.
These
tools
functional,
transcriptomic,
proteomic
studies
based
on
anatomical
targeting.
NeuronBridge
search
relate
light
microscopy
images
these
split-GAL4
to
connectomes
reconstructed
from
electron
images.
The
collections
are
result
screening
over
77,000
split
hemidriver
combinations.
Previously
published
new
included,
all
validated
for
expression
curated
optimal
type
specificity
across
diverse
types.
In
addition
stocks
well-characterized
lines,
we
make
available
300,000
3D
lines.