bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 17, 2024
Understanding
the
mechanisms
of
hypoblast
development
and
its
role
in
implantation
is
critical
for
improving
farm
animal
reproduction,
but
it
hampered
by
lack
research
models.
Here
we
report
that
a
chemical
cocktail
(FGF4,
BMP4,
IL-6,
XAV939,
A83-01)
enables
de
novo
derivation
long-term
culture
bovine
extraembryonic
endoderm
cells
(bXENs).
Transcriptomic
epigenomic
analyses
confirmed
identity
bXENs
revealed
they
are
resemble
lineages
early
peri-implantation
embryos.
We
showed
help
maintain
stemness
ESCs
prevent
them
from
differentiation.
In
presence
signaling
sustaining
bXENs,
growth
progression
epiblasts
also
facilitated
developing
pre-implantation
embryo.
Furthermore,
through
3D
assembly
with
TSCs,
developed
an
improved
blastocyst
like
structure
(bovine
blastoid)
resembles
blastocyst.
The
XENs
blastoids
established
this
study
represent
accessible
vitro
models
understanding
reproductive
efficiency
livestock
species.
Stem Cell Reports,
Journal Year:
2025,
Volume and Issue:
unknown, P. 102419 - 102419
Published: Feb. 1, 2025
Highlights•A
biallelic,
dual-colored
fluorescent
reporter
at
the
imprinted
SNRPN
locus
in
hPSCs•Biallelic
expression
is
rapidly
induced
during
primed-to-naive
resetting•Acquisition
of
biallelic
irreversible
upon
re-priming•ZFP57
overexpression
mitigates
imprint
erasure
resettingSummaryNaive
human
pluripotent
stem
cells
(hPSCs)
model
pre-implantation
epiblast.
However,
parent-specific
epigenetic
marks
(imprints)
are
eroded
naive
hPSCs,
which
represents
an
important
deviation
from
epiblast
vivo.
To
track
dynamics
resetting
real
time,
we
established
a
both
alleles
locus.
During
resetting,
becomes
most
cells,
and
re-priming.
We
utilized
this
live-cell
to
evaluate
chemical
genetic
strategies
minimize
erasure.
Decreasing
level
MEK/ERK
inhibition
or
overexpressing
KRAB
zinc-finger
protein
ZFP57
protected
subset
imprints
resetting.
Combining
these
two
levels
further
extent
than
either
strategy
alone.
This
study
offers
experimental
tool
enhance
stability
transitions
between
states
vitro.Graphical
abstract
Development,
Journal Year:
2025,
Volume and Issue:
152(7)
Published: April 1, 2025
ABSTRACT
Pluripotency,
the
capacity
to
generate
all
cells
of
body,
is
a
defining
property
transient
population
epiblast
found
in
pre-,
peri-
and
post-implantation
mammalian
embryos.
As
development
progresses,
undergo
dynamic
transitions
pluripotency
states,
concurrent
with
specification
extra-embryonic
embryonic
lineages.
Recently,
stem
cell-based
models
pre-
human
have
been
developed
using
that
capture
key
properties
at
different
developmental
stages.
Here,
we
review
early
primate
development,
comparing
states
vivo
cultured
pluripotent
representative
these
states.
We
consider
how
status
starting
influences
embryo
and,
turn,
what
can
learn
about
epiblast.
Finally,
discuss
limitations
questions
arising
from
pioneering
studies
this
emerging
field.
BioEssays,
Journal Year:
2024,
Volume and Issue:
46(12)
Published: Aug. 23, 2024
Abstract
The
discovery
of
mouse
embryonic
stem
cells
in
1981
transformed
research
mammalian
developmental
biology
and
functional
genomics.
subsequent
generation
human
pluripotent
(PSCs)
the
development
molecular
reprogramming
have
opened
unheralded
avenues
for
drug
cell
replacement
therapy.
Here,
I
review
history
PSCs
from
perspective
that
long‐term
self‐renewal
is
a
product
vitro
signaling
environment,
rather
than
an
intrinsic
feature
embryos.
discuss
relationship
between
states
captured
to
stages
epiblast
embryo
suggest
key
considerations
evaluation
PSCs.
A
remaining
fundamental
challenge
determine
whether
naïve
pluripotency
can
be
propagated
broad
range
mammals
by
exploiting
common
principles
gene
regulatory
architecture.
Life Science Alliance,
Journal Year:
2025,
Volume and Issue:
8(3), P. e202403091 - e202403091
Published: Jan. 8, 2025
Mammalian
pre-implantation
development
is
entirely
devoted
to
the
specification
of
extra-embryonic
lineages,
which
are
fundamental
for
embryo
morphogenesis
and
support.
The
second
fate
decision
taken
just
before
implantation,
as
defined
by
epiblast
(EPI)
primitive
endoderm
(PE)
specification.
Later,
EPI
forms
proper
PE
contributes
formation
yolk
sac.
molecularly
morphologically
distinct
lineages
final
step
a
multistage
process,
begins
when
bipotent
progenitor
cells
diverge
into
separate
fates.
Despite
advances
in
uncovering
molecular
mechanisms
underlying
differential
transcriptional
patterns
that
dictate
how
apparently
identical
make
decisions
lineage
integrity
maintained,
detailed
overview
these
still
lacking.
In
this
review,
we
dissect
process
four
stages
(initiation,
specification,
segregation,
maintenance)
provide
comprehensive
understanding
involved
establishment
mouse.
addition,
discuss
conservation
key
processes
humans,
based
on
most
recent
findings.
Cell stem cell,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 1, 2025
Naive
pluripotent
stem
cells
(PSCs)
are
counterparts
of
early
epiblast
in
the
mammalian
embryo.
Mouse
and
human
naive
PSCs
differ
self-renewal
requirements
extraembryonic
lineage
potency.
Here,
we
investigated
generation
chimpanzee
PSCs.
Colonies
generated
by
resetting
or
reprogramming
failed
to
propagate.
We
discovered
that
is
enabled
inhibition
Polycomb
repressive
complex
2
(PRC2).
Expanded
show
global
transcriptome
proximity
embryo
pre-implantation
epiblast,
with
shared
expression
a
subset
pluripotency
transcription
factors.
Chimpanzee
can
transition
multilineage
competence
differentiate
into
trophectoderm
hypoblast,
forming
tri-lineage
blastoids.
They
thus
provide
higher
primate
comparative
model
for
studying
embryogenesis.
Genetic
deletions
confirm
PRC2
mediates
growth
arrest.
Further,
overcomes
roadblock
feeder-free
propagation
Therefore,
excess
deposition
chromatin
modification
H3K27me3
an
unexpected
barrier
PSC
self-renewal.
Nature Cell Biology,
Journal Year:
2025,
Volume and Issue:
unknown
Published: April 4, 2025
Abstract
Preimplantation
development
is
an
important
window
of
human
embryogenesis.
However,
ethical
constraints
and
the
limitations
involved
in
studying
embryos
often
necessitate
use
alternative
model
systems.
Here
we
identify
guinea
pig
as
a
promising
small
animal
to
study
preimplantation
development.
Using
single-cell
RNA-sequencing,
generated
atlas
development,
revealing
its
close
resemblance
early
embryogenesis
terms
timing
compaction,
early-,
mid-
late-blastocyst
formation,
implantation,
spatio-temporal
expression
key
lineage
markers.
We
also
show
conserved
roles
Hippo,
MEK-ERK
JAK-STAT
signalling.
Furthermore,
multi-species
analysis
highlights
divergent
genes
during
pluripotency.
The
serves
valuable
for
advancing
stem
cell
research,
can
be
leveraged
better
understand
longer-term
impact
exposures
on
offspring
outcomes.
Development,
Journal Year:
2024,
Volume and Issue:
151(11)
Published: May 1, 2024
Analysis
of
single
cell
transcriptomics
(scRNA-seq)
data
is
typically
performed
after
subsetting
to
highly
variable
genes
(HVGs).
Here,
we
show
that
Entropy
Sorting
provides
an
alternative
mathematical
framework
for
feature
selection.
On
synthetic
datasets,
continuous
Sort
Feature
Weighting
(cESFW)
outperforms
HVG
selection
in
distinguishing
cell-state-specific
genes.
We
apply
cESFW
six
merged
scRNA-seq
datasets
spanning
human
early
embryo
development.
Without
smoothing
or
augmenting
the
raw
counts
matrices,
generates
a
high-resolution
embedding
displaying
coherent
developmental
progression
from
eight-cell
post-implantation
stages
and
delineating
15
distinct
states.
The
highlights
sequential
lineage
decisions
during
blastocyst
development,
while
unsupervised
clustering
identifies
branch
point
populations
obscured
previous
analyses.
first
branching
region,
where
morula
cells
become
specified
inner
mass
trophectoderm,
includes
previously
asserted
lack
trajectory.
quantify
relatedness
different
pluripotent
stem
cultures
types
identify
marker
naïve
primed
pluripotency.
Finally,
by
revealing
with
dynamic
lineage-specific
expression,
provide
markers
staging
blastocyst.
BioEssays,
Journal Year:
2024,
Volume and Issue:
46(12)
Published: July 26, 2024
Today,
human
pluripotent
stem
cell
technologies
find
widespread
application
across
biomedical
research,
as
models
for
early
development,
platforms
functional
genomics,
tools
the
study
of
disease,
drug
screening
and
toxicology,
a
renewable
source
cellular
therapeutics
range
intractable
diseases.
The
foundations
this
revolution
rest
on
advances
in
wide
disciplines,
including
cancer
biology,
assisted
reproduction,
culture
organoid
technology,
somatic
nuclear
transfer,
primate
embryology,
single-cell
gene
editing.
This
review
surveys
slow
emergence
pluripotency
exponential
growth
field
during
past
several
decades.