Microbiome,
Journal Year:
2014,
Volume and Issue:
2(1)
Published: Feb. 3, 2014
This
study
was
undertaken
to
characterize
the
vaginal
microbiota
throughout
normal
human
pregnancy
using
sequence-based
techniques.
We
compared
microbial
composition
of
non-pregnant
patients
with
a
group
pregnant
women
who
delivered
at
term.
A
retrospective
case–control
longitudinal
designed
and
included
(n
=
32)
term
(38
42
weeks)
without
complications
22).
Serial
samples
fluid
were
collected
from
both
patients.
16S
rRNA
gene
survey
conducted
pyrosequencing
structure
stability
microbiota.
Linear
mixed
effects
models
generalized
estimating
equations
used
identify
phylotypes
whose
relative
abundance
different
between
two
groups.
The
that
(higher
Lactobacillus
vaginalis,
L.
crispatus,
gasseri
jensenii
lower
22
other
in
women).
Bacterial
community
state
type
(CST)
IV-B
or
CST
IV-A
characterized
by
high
species
genus
Atopobium
as
well
presence
Prevotella,
Sneathia,
Gardnerella,
Ruminococcaceae,
Parvimonas,
Mobiluncus
taxa
previously
shown
be
associated
bacterial
vaginosis
less
frequent
pregnancy.
higher
than
women;
however,
during
pregnancy,
communities
shift
almost
exclusively
one
dominated
spp.
another
report
first
Differences
observed.
predominant
members
These
results
can
serve
basis
relationship
microbiome
adverse
outcomes.
BDJ,
Journal Year:
2016,
Volume and Issue:
221(10), P. 657 - 666
Published: Nov. 1, 2016
For
millions
of
years,
our
resident
microbes
have
coevolved
and
coexisted
with
us
in
a
mostly
harmonious
symbiotic
relationship.
We
are
not
distinct
entities
from
microbiome,
but
together
we
form
'superorganism'
or
holobiont,
the
microbiome
playing
significant
role
physiology
health.
The
mouth
houses
second
most
diverse
microbial
community
body,
harbouring
over
700
species
bacteria
that
colonise
hard
surfaces
teeth
soft
tissues
oral
mucosa.
Through
recent
advances
technology,
started
to
unravel
complexities
gained
new
insights
into
its
during
both
health
disease.
Perturbations
through
modern-day
lifestyles
can
detrimental
consequences
for
general
In
dysbiosis,
finely-tuned
equilibrium
ecosystem
is
disrupted,
allowing
disease-promoting
manifest
cause
conditions
such
as
caries,
gingivitis
periodontitis.
practitioners
patients
alike,
promoting
balanced
therefore
important
effectively
maintain
restore
This
article
aims
give
an
update
on
current
knowledge
disease
discuss
implications
healthcare.
Environmental Research,
Journal Year:
2018,
Volume and Issue:
169, P. 483 - 493
Published: Nov. 26, 2018
The
extensive
use
of
antibiotics
leading
to
the
rapid
spread
antibiotic
resistance
poses
high
health
risks
humans,
but
date
there
is
still
lack
a
quantitative
model
properly
assess
risks.
Concerns
over
risk
residues
in
environment
are
mainly
(1)
potential
hazard
ingested
altering
human
microbiome
and
promoting
emergence
selection
for
bacteria
inhabiting
body,
(2)
creating
pressure
on
environmental
reservoirs
environment.
We
provide
holistic
view
assessment
associated
with
contrast
that
resistant
discuss
main
knowledge
gaps
future
research
should
be
prioritized
achieve
assessment.
examined
summarized
available
data
information
four
core
elements
environment:
identification,
exposure
assessment,
dose-response
characterization.
required
characterize
severely
limited.
needs
have
been
identified
enable
better
assessments
establishment
standardized
monitoring
guide
environment,
derivation
relationship
between
levels
pathogenic
antibiotic-resistance
development
different
settings,
(3)
various
infection
diseases.
After
identification
key
determinant
parameters,
we
propose
conceptual
framework
A
was
provided.
Cellular Microbiology,
Journal Year:
2014,
Volume and Issue:
16(7), P. 1024 - 1033
Published: May 5, 2014
Mammalian
immune
system
development
depends
on
instruction
from
resident
commensal
microorganisms.
Diseases
associated
with
abnormal
responses
towards
environmental
and
self
antigens
have
been
rapidly
increasing
over
the
last
50
years.
These
diseases
include
inflammatory
bowel
disease
(IBD),
multiple
sclerosis
(MS),
type
I
diabetes
(T1D),
allergies
asthma.
The
observation
that
people
mediated
house
a
different
microbial
community
when
compared
to
healthy
individuals
suggests
pathogenesis
arises
improper
training
of
by
microbiota.
However,
hundreds
microorganisms
our
bodies
it
is
hard
know
which
these
contribute
health
more
importantly
how?
Microbiologists
studying
pathogenic
organisms
long
adhered
Koch's
postulates
directly
relate
certain
specific
microbe,
raising
question
whether
this
might
be
true
commensal–host
relationships
as
well.
Emerging
evidence
supports
rather
than
one
or
two
dominant
inducing
host
health,
composition
entire
residents
influences
balanced
response.
Thus,
perturbations
structure
complex
communities
(referred
dysbiosis)
can
lead
deficient
education
subsequent
diseases.
Here
we
will
overview
literature
describes
causes
dysbiosis
mechanisms
evolved
prevent
changes
structure.
Building
off
studies,
categorize
types
define
how
collections
influence
This
research
has
broad
implications
for
future
therapies
go
beyond
introduction
single
organism
induce
health.
We
propose
identifying
re-establish
microbiota
after
occurred,
process
refer
rebiosis,
fundamental
treating
Science Translational Medicine,
Journal Year:
2016,
Volume and Issue:
8(343)
Published: June 15, 2016
The
gut
microbial
community
is
dynamic
during
the
first
3
years
of
life,
before
stabilizing
to
an
adult-like
state.
However,
little
known
about
impact
environmental
factors
on
developing
human
microbiome.
We
report
a
longitudinal
study
microbiome
based
DNA
sequence
analysis
monthly
stool
samples
and
clinical
information
from
39
children,
half
whom
received
multiple
courses
antibiotics
life.
Whereas
most
children
born
by
vaginal
delivery
was
dominated
Bacteroides
species,
four
cesarean
section
20%
vaginally
lacked
in
6
18
months
Longitudinal
sampling,
coupled
with
whole-genome
shotgun
sequencing,
allowed
detection
strain-level
variation
as
well
abundance
antibiotic
resistance
genes.
microbiota
antibiotic-treated
less
diverse
terms
both
bacterial
species
strains,
some
often
single
strains.
In
addition,
we
observed
short-term
composition
changes
between
consecutive
treated
antibiotics.
Antibiotic
genes
carried
chromosomes
showed
peak
after
treatment
followed
sharp
decline,
whereas
mobile
elements
persisted
longer
therapy
ended.
Our
results
highlight
value
high-density
sampling
studies
high-resolution
strain
profiling
for
studying
establishment
response
perturbation
infant
Gut,
Journal Year:
2015,
Volume and Issue:
65(1), P. 57 - 62
Published: June 11, 2015
Objective
The
assessment
of
potentially
confounding
factors
affecting
colon
microbiota
composition
is
essential
to
the
identification
robust
microbiome
based
disease
markers.
Here,
we
investigate
link
between
gut
variation
and
stool
consistency
using
Bristol
Stool
Scale
classification,
which
reflects
faecal
water
content
activity,
considered
a
proxy
for
intestinal
transit
time.
Design
Through
16S
rDNA
Illumina
profiling
samples
53
healthy
women,
evaluated
associations
richness,
Bacteroidetes:Firmicutes
ratio,
enterotypes,
genus
abundance
with
self-reported,
Scale-based
consistency.
Each
sample's
growth
potential
was
calculated
test
whether
time
acts
as
selective
force
on
bacterial
rates.
Results
strongly
correlates
all
known
major
It
negatively
correlated
species
positively
associated
linked
AkkermansiaMethanobrevibacter
abundance.
Enterotypes
are
distinctly
distributed
over
BSS-scores.
Based
correlations
scores
within
both
hypothesise
that
accelerated
contributes
ecosystem
differentiation.
While
shorter
times
can
be
increased
fast
growing
in
Ruminococcaceae-Bacteroides
samples,
hinting
washout
avoidance
strategy
faster
replication,
this
trend
absent
Prevotella-enterotyped
individuals.
Within
enterotype
adherence
host
tissue
therefore
appears
more
likely
cope
washout.
Conclusions
strength
enterotypes
community
emphasises
crucial
importance
metagenome-wide
association
studies.